Ccdc88a (coiled coil domain containing 88A) - Rat Genome Database

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Gene: Ccdc88a (coiled coil domain containing 88A) Mus musculus
Analyze
Symbol: Ccdc88a
Name: coiled coil domain containing 88A
RGD ID: 1315459
MGI Page MGI
Description: Enables microtubule binding activity; protein kinase B binding activity; and protein serine/threonine kinase activator activity. Involved in several processes, including TOR signaling; positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; and regulation of neuron projection development. Located in cell leading edge. Is expressed in several structures, including limb; lung; nervous system; sensory organ; and somite. Orthologous to human CCDC88A (coiled-coil domain containing 88A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A430106J12Rik; AI848406; akt phosphorylation enhancer; Akt-phosphorylation enhancer; Ape; C130096N06Rik; C330012F17Rik; coiled-coil domain-containing protein 88A; D130005J21Rik; G; g alpha-interacting vesicle-associated protein; Gi; girders of actin filament; girdin; Giv; Grdn; HkR; Hkrp1; Hook-related protein 1; RP23-92B18.2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391129,323,521 - 29,460,808 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1129,323,658 - 29,460,808 (+)EnsemblGRCm39 Ensembl
GRCm381129,373,405 - 29,510,808 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1129,373,658 - 29,510,808 (+)EnsemblGRCm38mm10GRCm38
MGSCv371129,273,775 - 29,410,812 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361129,273,775 - 29,410,812 (+)NCBIMGSCv36mm8
Celera1131,739,265 - 31,872,126 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:15749703   PMID:15753085   PMID:15882442   PMID:16141072   PMID:16141073  
PMID:16944949   PMID:16959763   PMID:18264090   PMID:18316593   PMID:19778506   PMID:19778507   PMID:20157114   PMID:21267068   PMID:21415395   PMID:21632933   PMID:21873635   PMID:22574214  
PMID:22974978   PMID:23195430   PMID:23886629   PMID:24211587   PMID:25043713   PMID:25061227   PMID:25074242   PMID:25378165   PMID:25707853   PMID:25732845   PMID:26072378   PMID:26391662  
PMID:26393439   PMID:26917597   PMID:27666957   PMID:28375676   PMID:28671696   PMID:29229865   PMID:29538402   PMID:30409884   PMID:32142853   PMID:33055214   PMID:34409938   PMID:36417873  
PMID:36604605   PMID:36822326   PMID:37839992  


Genomics

Comparative Map Data
Ccdc88a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391129,323,521 - 29,460,808 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1129,323,658 - 29,460,808 (+)EnsemblGRCm39 Ensembl
GRCm381129,373,405 - 29,510,808 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1129,373,658 - 29,510,808 (+)EnsemblGRCm38mm10GRCm38
MGSCv371129,273,775 - 29,410,812 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361129,273,775 - 29,410,812 (+)NCBIMGSCv36mm8
Celera1131,739,265 - 31,872,126 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.61NCBI
CCDC88A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38255,287,842 - 55,419,856 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl255,287,842 - 55,419,895 (-)EnsemblGRCh38hg38GRCh38
GRCh37255,514,978 - 55,646,992 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36255,368,482 - 55,500,467 (-)NCBINCBI36Build 36hg18NCBI36
Build 34255,426,630 - 55,558,614NCBI
Celera255,355,473 - 55,487,467 (-)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef255,250,032 - 55,382,309 (-)NCBIHuRef
CHM1_1255,444,983 - 55,577,340 (-)NCBICHM1_1
T2T-CHM13v2.0255,285,045 - 55,417,059 (-)NCBIT2T-CHM13v2.0
Ccdc88a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814107,304,654 - 107,456,104 (+)NCBIGRCr8
mRatBN7.214103,104,091 - 103,256,112 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14103,103,513 - 103,252,368 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.014113,771,093 - 113,936,376 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14113,867,209 - 113,932,263 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014113,437,642 - 113,602,573 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414110,376,486 - 110,525,468 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114110,402,673 - 110,553,099 (+)NCBI
Celera14101,981,223 - 102,133,399 (+)NCBICelera
Cytogenetic Map14q22NCBI
Ccdc88a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542427,617,833 - 27,771,385 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542427,617,833 - 27,771,385 (+)NCBIChiLan1.0ChiLan1.0
CCDC88A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21270,906,260 - 71,038,445 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A70,910,212 - 71,042,397 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A55,445,060 - 55,576,479 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A56,585,354 - 56,716,197 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A56,589,221 - 56,715,362 (-)Ensemblpanpan1.1panPan2
CCDC88A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,167,907 - 56,300,974 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,170,479 - 56,300,908 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1056,119,423 - 56,257,932 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01057,166,787 - 57,305,336 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1057,173,896 - 57,305,357 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11056,867,913 - 57,007,335 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,147,148 - 57,286,241 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01057,437,657 - 57,577,292 (-)NCBIUU_Cfam_GSD_1.0
Ccdc88a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629226,767,303 - 26,901,093 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364911,669,983 - 1,804,221 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364911,670,192 - 1,804,056 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC88A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl385,811,127 - 85,941,864 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1385,811,043 - 85,971,162 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2390,618,672 - 90,725,605 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC88A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11451,484,886 - 51,615,066 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1451,484,906 - 51,610,654 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604560,105,043 - 60,235,398 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc88a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248336,116,686 - 6,260,211 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248336,117,260 - 6,260,211 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc88a
3286 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1341
Count of miRNA genes:628
Interacting mature miRNAs:812
Transcripts:ENSMUST00000040182, ENSMUST00000109477, ENSMUST00000123561, ENSMUST00000137227, ENSMUST00000140194, ENSMUST00000144450, ENSMUST00000155854
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse

Markers in Region
BB284152  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.3UniSTS
Whitehead/MRC_RH11447.04UniSTS
AU016303  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381129,386,143 - 29,386,263UniSTSGRCm38
MGSCv371129,286,143 - 29,286,263UniSTSGRCm37
Celera1131,751,636 - 31,751,756UniSTS
Cytogenetic Map11A3.3UniSTS
Whitehead/MRC_RH11448.43UniSTS
AI848406  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381129,508,974 - 29,509,085UniSTSGRCm38
MGSCv371129,408,974 - 29,409,085UniSTSGRCm37
Celera1131,870,288 - 31,870,399UniSTS
Cytogenetic Map11A3.3UniSTS
Whitehead/MRC_RH11448.43UniSTS
Ccdc88a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.3UniSTS
cM Map11 UniSTS
UniSTS:236542  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381129,505,340 - 29,505,445UniSTSGRCm38
MGSCv371129,405,340 - 29,405,445UniSTSGRCm37
Celera1131,866,666 - 31,866,771UniSTS
Cytogenetic Map11A3.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001363368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_176841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB087827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI530462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL935054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX284634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD803848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN458498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN532842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO044538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000040182   ⟹   ENSMUSP00000048978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,323,658 - 29,460,808 (+)Ensembl
GRCm38.p6 Ensembl1129,373,658 - 29,510,808 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109477   ⟹   ENSMUSP00000105103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,323,777 - 29,373,411 (+)Ensembl
GRCm38.p6 Ensembl1129,373,777 - 29,423,411 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123561   ⟹   ENSMUSP00000119173
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,420,354 - 29,454,106 (+)Ensembl
GRCm38.p6 Ensembl1129,470,354 - 29,504,106 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137227
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,406,496 - 29,411,228 (+)Ensembl
GRCm38.p6 Ensembl1129,456,496 - 29,461,228 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140194   ⟹   ENSMUSP00000114942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,435,979 - 29,453,518 (+)Ensembl
GRCm38.p6 Ensembl1129,485,979 - 29,503,518 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,443,930 - 29,447,860 (+)Ensembl
GRCm38.p6 Ensembl1129,493,930 - 29,497,860 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155854   ⟹   ENSMUSP00000115117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,413,888 - 29,432,639 (+)Ensembl
GRCm38.p6 Ensembl1129,463,888 - 29,482,639 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239407   ⟹   ENSMUSP00000159356
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1129,324,348 - 29,454,805 (+)Ensembl
GRCm38.p6 Ensembl1129,374,348 - 29,504,805 (+)Ensembl
RefSeq Acc Id: NM_001363368   ⟹   NP_001350297
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,658 - 29,456,134 (+)NCBI
GRCm381129,373,658 - 29,506,134 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363369   ⟹   NP_001350298
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,658 - 29,456,134 (+)NCBI
GRCm381129,373,658 - 29,506,134 (+)NCBI
Sequence:
RefSeq Acc Id: NM_176841   ⟹   NP_789811
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,658 - 29,460,808 (+)NCBI
GRCm381129,373,658 - 29,510,808 (+)NCBI
MGSCv371129,273,775 - 29,410,812 (+)RGD
Celera1131,739,662 - 31,872,122 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514451   ⟹   XP_006514514
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,521 - 29,455,564 (+)NCBI
GRCm381129,373,405 - 29,506,008 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514452   ⟹   XP_006514515
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,521 - 29,456,006 (+)NCBI
GRCm381129,373,405 - 29,505,567 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514454   ⟹   XP_006514517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,521 - 29,455,564 (+)NCBI
GRCm381129,373,405 - 29,506,008 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514455   ⟹   XP_006514518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,521 - 29,460,808 (+)NCBI
GRCm381129,373,405 - 29,510,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314219   ⟹   XP_017169708
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,521 - 29,460,808 (+)NCBI
GRCm381129,373,405 - 29,509,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245467   ⟹   XP_030101327
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,521 - 29,460,808 (+)NCBI
GRCm381129,373,405 - 29,509,228 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156223   ⟹   XP_036012116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,521 - 29,455,564 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156224   ⟹   XP_036012117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,521 - 29,455,564 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156225   ⟹   XP_036012118
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,521 - 29,460,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156226   ⟹   XP_036012119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,521 - 29,460,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156227   ⟹   XP_036012120
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391129,323,521 - 29,435,363 (+)NCBI
Sequence:
RefSeq Acc Id: NP_789811   ⟸   NM_176841
- Peptide Label: isoform 3
- UniProtKB: Q5SNZ0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514518   ⟸   XM_006514455
- Peptide Label: isoform X6
- UniProtKB: Q8C486 (UniProtKB/Swiss-Prot),   Q5SNZ1 (UniProtKB/Swiss-Prot),   Q5M6X5 (UniProtKB/Swiss-Prot),   Q5M6X4 (UniProtKB/Swiss-Prot),   Q5M6X2 (UniProtKB/Swiss-Prot),   Q8CFU7 (UniProtKB/Swiss-Prot),   Q5SNZ0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514514   ⟸   XM_006514451
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006514515   ⟸   XM_006514452
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006514517   ⟸   XM_006514454
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017169708   ⟸   XM_017314219
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_030101327   ⟸   XM_030245467
- Peptide Label: isoform X8
RefSeq Acc Id: NP_001350297   ⟸   NM_001363368
- Peptide Label: isoform 1
- UniProtKB: A0A6I8MX08 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001350298   ⟸   NM_001363369
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000048978   ⟸   ENSMUST00000040182
RefSeq Acc Id: ENSMUSP00000159356   ⟸   ENSMUST00000239407
RefSeq Acc Id: ENSMUSP00000114942   ⟸   ENSMUST00000140194
RefSeq Acc Id: ENSMUSP00000105103   ⟸   ENSMUST00000109477
RefSeq Acc Id: ENSMUSP00000119173   ⟸   ENSMUST00000123561
RefSeq Acc Id: ENSMUSP00000115117   ⟸   ENSMUST00000155854
RefSeq Acc Id: XP_036012118   ⟸   XM_036156225
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036012119   ⟸   XM_036156226
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036012116   ⟸   XM_036156223
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036012117   ⟸   XM_036156224
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036012120   ⟸   XM_036156227
- Peptide Label: isoform X11
Protein Domains
Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SNZ0-F1-model_v2 AlphaFold Q5SNZ0 1-1873 view protein structure

Promoters
RGD ID:6820214
Promoter ID:MM_KWN:6781
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000072471,   ENSMUST00000101427,   OTTMUST00000011875,   UC007IGV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361129,273,651 - 29,274,277 (+)MPROMDB
RGD ID:8674166
Promoter ID:EPDNEW_M15114
Type:multiple initiation site
Name:Ccdc88a_1
Description:Mus musculus coiled coil domain containing 88A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381129,456,543 - 29,456,603EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925177 AgrOrtholog
Ensembl Genes ENSMUSG00000032740 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000040182 ENTREZGENE
  ENSMUST00000040182.13 UniProtKB/Swiss-Prot
  ENSMUST00000109477.2 UniProtKB/TrEMBL
  ENSMUST00000123561.8 UniProtKB/TrEMBL
  ENSMUST00000140194.2 UniProtKB/TrEMBL
  ENSMUST00000155854.8 UniProtKB/TrEMBL
  ENSMUST00000239407 ENTREZGENE
  ENSMUST00000239407.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
  1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOOK_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:108686 UniProtKB/Swiss-Prot
MGD MGI:1925177 ENTREZGENE
NCBI Gene 108686 ENTREZGENE
PANTHER HOOK PROTEINS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR18947:SF30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HOOK_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccdc88a PhenoGen
PROSITE PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Hook domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A6I8MX08 ENTREZGENE, UniProtKB/TrEMBL
  F6R1B7_MOUSE UniProtKB/TrEMBL
  GRDN_MOUSE UniProtKB/Swiss-Prot
  Q5M6X2 ENTREZGENE
  Q5M6X4 ENTREZGENE
  Q5M6X5 ENTREZGENE
  Q5SNZ0 ENTREZGENE
  Q5SNZ1 ENTREZGENE
  Q8C486 ENTREZGENE
  Q8CFU7 ENTREZGENE
  Z4YKY0_MOUSE UniProtKB/TrEMBL
  Z4YLN8_MOUSE UniProtKB/TrEMBL
  Z4YLP6_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q5M6X2 UniProtKB/Swiss-Prot
  Q5M6X4 UniProtKB/Swiss-Prot
  Q5M6X5 UniProtKB/Swiss-Prot
  Q5SNZ1 UniProtKB/Swiss-Prot
  Q8C486 UniProtKB/Swiss-Prot
  Q8CFU7 UniProtKB/Swiss-Prot