Ryr3 (ryanodine receptor 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ryr3 (ryanodine receptor 3) Chinchilla lanigera
Analyze
Symbol: Ryr3
Name: ryanodine receptor 3
RGD ID: 8995179
Description: ENCODES a protein that exhibits calcium-induced calcium release activity (ortholog); intracellularly gated calcium channel activity (ortholog); ryanodine-sensitive calcium-release channel activity (ortholog); INVOLVED IN calcium ion transport (ortholog); intracellular calcium ion homeostasis (ortholog); negative regulation of cytosolic calcium ion concentration (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH amenorrhea (ortholog); arthrogryposis multiplex congenita (ortholog); Bloom syndrome (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); junctional membrane complex (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955416713,373 - 1,259,885 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955416712,506 - 1,260,111 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ryr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955416713,373 - 1,259,885 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955416712,506 - 1,260,111 (-)NCBIChiLan1.0ChiLan1.0
RYR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381533,310,967 - 33,866,102 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1533,310,962 - 33,866,121 (+)EnsemblGRCh38hg38GRCh38
GRCh371533,603,168 - 34,158,303 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361531,390,469 - 31,945,595 (+)NCBINCBI36Build 36hg18NCBI36
Build 341531,390,468 - 31,945,594NCBI
Celera1510,404,754 - 10,960,825 (+)NCBICelera
Cytogenetic Map15q13.3-q14NCBI
HuRef1510,464,756 - 11,021,191 (+)NCBIHuRef
CHM1_11533,721,203 - 34,276,301 (+)NCBICHM1_1
T2T-CHM13v2.01531,107,439 - 31,663,747 (+)NCBIT2T-CHM13v2.0
Ryr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392112,461,699 - 113,047,755 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2112,461,700 - 113,047,441 (-)EnsemblGRCm39 Ensembl
GRCm382112,631,354 - 113,217,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2112,631,355 - 113,217,096 (-)EnsemblGRCm38mm10GRCm38
MGSCv372112,471,537 - 112,870,488 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362112,432,219 - 112,831,170 (-)NCBIMGSCv36mm8
Celera2113,779,152 - 114,176,095 (-)NCBICelera
Cytogenetic Map2E3- E4NCBI
cM Map257.2NCBI
Ryr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83119,886,129 - 120,433,465 (-)NCBIGRCr8
mRatBN7.2399,431,755 - 99,979,125 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl399,432,505 - 99,704,961 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03104,117,307 - 104,665,151 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3104,118,063 - 104,504,204 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03110,710,040 - 111,249,930 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4398,476,626 - 98,872,629 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1398,375,910 - 98,382,386 (-)NCBI
Celera398,415,656 - 98,961,847 (-)NCBICelera
Cytogenetic Map3q35NCBI
RYR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21622,089,131 - 22,652,150 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11526,810,910 - 27,373,696 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01511,816,430 - 12,379,101 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11530,652,244 - 31,215,359 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1530,817,428 - 31,214,494 (+)Ensemblpanpan1.1panPan2
RYR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1301,179,575 - 1,533,352 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl301,180,359 - 1,533,619 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha301,223,971 - 1,742,310 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0301,278,037 - 1,798,290 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl301,278,037 - 1,798,542 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1301,224,326 - 1,741,522 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0301,323,490 - 1,840,773 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0301,451,015 - 1,969,019 (-)NCBIUU_Cfam_GSD_1.0
Ryr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864079,716,961 - 80,219,351 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366731,932,755 - 2,434,066 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366732,078,095 - 2,434,872 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RYR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl780,640,123 - 81,208,491 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1780,640,030 - 81,208,576 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap7q22-q23NCBI
Ryr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624804467,295 - 1,030,212 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624804467,207 - 1,030,873 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000012906   ⟹   ENSCLAP00000012758
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955416713,373 - 1,259,885 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000012907   ⟹   ENSCLAP00000012759
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955416713,373 - 1,259,885 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000012908   ⟹   ENSCLAP00000012760
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955416713,373 - 1,259,885 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000012909   ⟹   ENSCLAP00000012761
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955416713,373 - 1,259,885 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000012910   ⟹   ENSCLAP00000012762
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955416713,373 - 1,098,231 (-)Ensembl
RefSeq Acc Id: XM_005381167   ⟹   XP_005381224
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955416712,506 - 1,260,111 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005381224 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012758
  ENSCLAP00000012758.1
  ENSCLAP00000012759.1
  ENSCLAP00000012760.1
  ENSCLAP00000012761.1
  ENSCLAP00000012762.1
RefSeq Acc Id: XP_005381224   ⟸   XM_005381167
- UniProtKB: A0A8C2YP11 (UniProtKB/TrEMBL),   A0A8C2VB65 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000012761   ⟸   ENSCLAT00000012909
Ensembl Acc Id: ENSCLAP00000012760   ⟸   ENSCLAT00000012908
Ensembl Acc Id: ENSCLAP00000012759   ⟸   ENSCLAT00000012907
Ensembl Acc Id: ENSCLAP00000012758   ⟸   ENSCLAT00000012906
Ensembl Acc Id: ENSCLAP00000012762   ⟸   ENSCLAT00000012910
Protein Domains
B30.2/SPRY   EF-hand   MIR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008810 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012906 ENTREZGENE
  ENSCLAT00000012906.1 UniProtKB/TrEMBL
  ENSCLAT00000012907.1 UniProtKB/TrEMBL
  ENSCLAT00000012908.1 UniProtKB/TrEMBL
  ENSCLAT00000012909.1 UniProtKB/TrEMBL
  ENSCLAT00000012910.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.10.490.160 UniProtKB/TrEMBL
  2.60.120.920 UniProtKB/TrEMBL
  2.80.10.50 UniProtKB/TrEMBL
  6.20.350.10 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
  IP3 receptor type 1 binding core, RIH domain UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Ins145_P3_rcpt UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  MIR_dom_sf UniProtKB/TrEMBL
  MIR_motif UniProtKB/TrEMBL
  RIH_assoc-dom UniProtKB/TrEMBL
  RIH_dom UniProtKB/TrEMBL
  Ryan_recept UniProtKB/TrEMBL
  Ryanodine_IP3_receptor UniProtKB/TrEMBL
  Ryanodine_rcpt UniProtKB/TrEMBL
  Ryanrecept_TM4-6 UniProtKB/TrEMBL
  RYDR_Jsol UniProtKB/TrEMBL
  RyR/IP3R_RIH_dom_sf UniProtKB/TrEMBL
  SPRY1_RyR UniProtKB/TrEMBL
  SPRY2_RyR UniProtKB/TrEMBL
  SPRY3_RyR UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
NCBI Gene Ryr3 ENTREZGENE
PANTHER B30.2/SPRY DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  RYANODINE RECEPTOR 3 UniProtKB/TrEMBL
Pfam Ins145_P3_rec UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
  MIR UniProtKB/TrEMBL
  RIH_assoc UniProtKB/TrEMBL
  RR_TM4-6 UniProtKB/TrEMBL
  RYDR_ITPR UniProtKB/TrEMBL
  RYDR_Jsol UniProtKB/TrEMBL
  RyR UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
PRINTS RYANODINER UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  MIR UniProtKB/TrEMBL
SMART MIR UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF100909 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
  SSF82109 UniProtKB/TrEMBL
UniProt A0A8C2VB65 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VC76_CHILA UniProtKB/TrEMBL
  A0A8C2VE97_CHILA UniProtKB/TrEMBL
  A0A8C2VHG8_CHILA UniProtKB/TrEMBL
  A0A8C2YP11 ENTREZGENE, UniProtKB/TrEMBL