Gpi (glucose-6-phosphate isomerase) - Rat Genome Database

Send us a Message



Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Gpi (glucose-6-phosphate isomerase) Chinchilla lanigera
Analyze
Symbol: Gpi
Name: glucose-6-phosphate isomerase
RGD ID: 8988998
Description: ENCODES a protein that exhibits glucose-6-phosphate isomerase activity (ortholog); monosaccharide binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN canonical glycolysis (ortholog); erythrocyte homeostasis (ortholog); fructose 6-phosphate metabolic process (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); anemia (ortholog); FOUND IN ciliary membrane (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554683,980,999 - 4,008,652 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554683,980,999 - 4,007,553 (+)NCBIChiLan1.0ChiLan1.0
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gpi
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554683,980,999 - 4,008,652 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554683,980,999 - 4,007,553 (+)NCBIChiLan1.0ChiLan1.0
GPI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381934,359,718 - 34,402,413 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1934,359,480 - 34,402,413 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371934,855,645 - 34,893,318 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361939,547,909 - 39,583,076 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341939,547,908 - 39,583,076NCBI
Celera1931,557,376 - 31,605,748 (+)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1931,360,777 - 31,377,222 (+)NCBIHuRef
HuRef1931,390,807 - 31,399,974 (+)NCBIHuRef
CHM1_11934,857,156 - 34,895,165 (+)NCBICHM1_1
T2T-CHM13v2.01936,887,003 - 36,946,977 (+)NCBIT2T-CHM13v2.0
Gpi1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39733,900,752 - 33,929,761 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl733,900,755 - 33,929,780 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38734,201,327 - 34,230,336 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl734,201,330 - 34,230,336 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37734,986,346 - 35,015,324 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36733,910,918 - 33,939,022 (-)NCBIMGSCv36mm8
MGSCv36724,688,418 - 24,717,214 (-)NCBIMGSCv36mm8
Celera729,335,681 - 29,371,931 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.46NCBI
Gpi
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,965,389 - 95,996,932 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl195,965,396 - 95,993,261 (-)EnsemblGRCr8
mRatBN7.2186,828,211 - 86,856,077 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,828,216 - 86,856,086 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx192,231,564 - 92,259,517 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01100,697,568 - 100,725,522 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,989,860 - 94,017,813 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd194,581,305 - 94,609,163 (-)NCBI
Lyon_Normotensive199,706,828 - 99,734,696 (-)NCBI
Lyon_Hypertensive196,240,132 - 96,267,996 (-)NCBI
F344_StmMcwi194,684,582 - 94,712,535 (-)NCBI
Rnor_6.0190,063,411 - 90,091,287 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl190,063,411 - 90,091,287 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0191,207,014 - 91,234,890 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4186,658,836 - 86,686,712 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera181,194,482 - 81,222,306 (-)NCBICelera
RGSC_v3.1186,736,946 - 86,764,823 (-)NCBI
Cytogenetic Map1q21NCBI
GPI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22040,351,367 - 40,402,743 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11942,351,411 - 42,404,890 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01931,301,469 - 31,355,362 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11940,024,584 - 40,080,598 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1940,024,584 - 40,080,598 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
GPI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,922,380 - 117,948,325 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1117,922,635 - 117,948,316 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1117,320,830 - 117,346,503 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01118,518,230 - 118,543,889 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1118,497,395 - 118,544,065 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11118,079,121 - 118,105,067 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,705,505 - 117,731,413 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01118,763,883 - 118,789,615 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gpi
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11518,236,540 - 18,262,959 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440934910,037,338 - 10,063,762 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365701,579,372 - 1,608,788 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365701,582,120 - 1,608,537 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl644,038,357 - 44,069,328 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1644,038,374 - 44,069,331 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2639,516,820 - 39,547,963 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap6q12NCBI
GPI
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1624,369,496 - 24,422,238 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_0236660737,177,821 - 7,221,208 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1629,404,067 - 29,451,290 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl629,403,500 - 29,453,162 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Gpi
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247948,826,281 - 8,851,614 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247948,823,449 - 8,851,625 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl2826,133,779 - 26,158,947 (+)Ensembl
Gpi
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12164,454,431 - 164,482,993 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000023535   ⟹   ENSCLAP00000023314
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554683,980,999 - 4,008,652 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000023536   ⟹   ENSCLAP00000023315
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554683,981,082 - 4,006,641 (+)Ensembl
RefSeq Acc Id: XM_005400002   ⟹   XP_005400059
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554683,980,999 - 4,007,553 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005400059 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023314
  ENSCLAP00000023314.1
  ENSCLAP00000023315.1
RefSeq Acc Id: XP_005400059   ⟸   XM_005400002
- UniProtKB: A0A8C2W2K0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000023314   ⟸   ENSCLAT00000023535
Ensembl Acc Id: ENSCLAP00000023315   ⟸   ENSCLAT00000023536


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015986 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023535 ENTREZGENE
  ENSCLAT00000023535.1 UniProtKB/TrEMBL
  ENSCLAT00000023536.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1390.10 UniProtKB/TrEMBL
  Glucose-6-phosphate isomerase like protein, domain 1 UniProtKB/TrEMBL
InterPro G6P_Isomerase UniProtKB/TrEMBL
  G6P_Isomerase_C UniProtKB/TrEMBL
  Phosphoglucose_isomerase_CS UniProtKB/TrEMBL
  SIS_dom_sf UniProtKB/TrEMBL
  SIS_PGI_1 UniProtKB/TrEMBL
  SIS_PGI_2 UniProtKB/TrEMBL
NCBI Gene Gpi ENTREZGENE
PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE UniProtKB/TrEMBL
  PTHR11469 UniProtKB/TrEMBL
Pfam PGI UniProtKB/TrEMBL
PRINTS G6PISOMERASE UniProtKB/TrEMBL
PROSITE P_GLUCOSE_ISOMERASE_1 UniProtKB/TrEMBL
  P_GLUCOSE_ISOMERASE_2 UniProtKB/TrEMBL
  P_GLUCOSE_ISOMERASE_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF53697 UniProtKB/TrEMBL
UniProt A0A8C2W2K0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W523_CHILA UniProtKB/TrEMBL