Aif1l (allograft inflammatory factor 1 like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Aif1l (allograft inflammatory factor 1 like) Chinchilla lanigera
Analyze
Symbol: Aif1l
Name: allograft inflammatory factor 1 like
RGD ID: 8964248
Description: ENCODES a protein that exhibits actin filament binding (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); breast cancer (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog); focal adhesion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: allograft inflammatory factor 1-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955513936,889 - 954,667 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955513936,889 - 954,667 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Aif1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955513936,889 - 954,667 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955513936,889 - 954,667 (+)NCBIChiLan1.0ChiLan1.0
AIF1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389131,096,531 - 131,123,144 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9131,096,476 - 131,123,152 (+)EnsemblGRCh38hg38GRCh38
GRCh379133,971,918 - 133,998,531 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369132,961,733 - 132,988,360 (+)NCBINCBI36Build 36hg18NCBI36
Build 349131,001,465 - 131,028,093NCBI
Celera9104,510,955 - 104,537,611 (+)NCBICelera
Cytogenetic Map9q34.12-q34.13NCBI
HuRef9103,462,597 - 103,489,133 (+)NCBIHuRef
CHM1_19134,121,047 - 134,147,670 (+)NCBICHM1_1
T2T-CHM13v2.09143,304,798 - 143,331,382 (+)NCBIT2T-CHM13v2.0
Aif1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39231,840,315 - 31,863,454 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl231,840,151 - 31,863,454 (+)EnsemblGRCm39 Ensembl
GRCm38231,950,303 - 31,973,442 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl231,950,139 - 31,973,442 (+)EnsemblGRCm38mm10GRCm38
MGSCv37231,805,823 - 31,828,962 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36231,772,312 - 31,795,451 (+)NCBIMGSCv36mm8
Celera231,653,266 - 31,676,512 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.95NCBI
Aif1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,627,239 - 35,651,793 (+)NCBIGRCr8
mRatBN7.2315,229,476 - 15,254,033 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,229,524 - 15,254,023 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,302,434 - 18,326,985 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0326,887,419 - 26,911,975 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,134,603 - 25,159,186 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.039,237,944 - 9,262,628 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl39,237,944 - 9,262,628 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0314,598,261 - 14,622,945 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,053,196 - 11,078,079 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1310,945,778 - 10,972,062 (+)NCBI
Celera39,976,750 - 10,001,583 (+)NCBICelera
Cytogenetic Map3p12NCBI
AIF1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,228,896 - 8,255,509 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan198,231,238 - 8,257,851 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09102,218,242 - 102,244,846 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19130,865,394 - 130,891,744 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9130,863,031 - 130,891,744 (+)Ensemblpanpan1.1panPan2
AIF1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1952,944,925 - 52,966,953 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl952,947,570 - 52,966,894 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha952,145,653 - 52,167,685 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0953,846,023 - 53,868,058 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl953,846,023 - 53,868,071 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1952,623,528 - 52,645,555 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0952,944,014 - 52,966,040 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0953,037,079 - 53,059,133 (-)NCBIUU_Cfam_GSD_1.0
Aif1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,193,397 - 198,211,193 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648717,961,854 - 17,979,749 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648717,961,922 - 17,979,721 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AIF1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1271,072,734 - 271,102,803 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11271,075,376 - 271,099,984 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21305,102,354 - 305,127,760 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AIF1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1127,016,619 - 7,043,663 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl127,016,398 - 7,043,575 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660798,457,744 - 8,484,869 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aif1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,739,793 - 4,757,280 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247604,739,886 - 4,757,291 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000006067   ⟹   ENSCLAP00000005964
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955513936,889 - 954,667 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000006068   ⟹   ENSCLAP00000005965
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955513937,014 - 952,021 (+)Ensembl
RefSeq Acc Id: XM_005408351   ⟹   XP_005408408
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955513941,321 - 954,667 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408353   ⟹   XP_005408410
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955513936,889 - 954,667 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005408408 (Get FASTA)   NCBI Sequence Viewer  
  XP_005408410 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000005964
  ENSCLAP00000005964.1
  ENSCLAP00000005965.1
Reference Protein Sequences
RefSeq Acc Id: XP_005408410   ⟸   XM_005408353
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UVM3 (UniProtKB/TrEMBL),   A0A8C2V0T7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408408   ⟸   XM_005408351
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000005965   ⟸   ENSCLAT00000006068
RefSeq Acc Id: ENSCLAP00000005964   ⟸   ENSCLAT00000006067
Protein Domains
Allograft inflammatory factor 1-like EF-hand   EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004225 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006067 ENTREZGENE
  ENSCLAT00000006067.1 UniProtKB/TrEMBL
  ENSCLAT00000006068.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro AIF-1_EF_pair UniProtKB/TrEMBL
  AIF1/AIF1L UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene Aif1l ENTREZGENE
PANTHER PTHR10356 UniProtKB/TrEMBL
  PTHR10356:SF5 UniProtKB/TrEMBL
Pfam AIF-1 UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8C2UVM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V0T7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Aif1l  allograft inflammatory factor 1 like    allograft inflammatory factor 1-like  Symbol and/or name change 5135510 APPROVED