Aif1l (allograft inflammatory factor 1 like) - Rat Genome Database

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Gene: Aif1l (allograft inflammatory factor 1 like) Heterocephalus glaber
Analyze
Symbol: Aif1l
Name: allograft inflammatory factor 1 like
RGD ID: 18913065
Description: ENCODES a protein that exhibits actin filament binding (inferred); calcium ion binding (inferred); metal ion binding (inferred); INVOLVED IN actin filament bundle assembly (inferred); ruffle assembly (inferred); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); breast cancer (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (ortholog); focal adhesion (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: allograft inflammatory factor 1-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,739,793 - 4,757,280 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247604,739,886 - 4,757,291 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Aif1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,739,793 - 4,757,280 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247604,739,886 - 4,757,291 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
AIF1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389131,096,531 - 131,123,144 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9131,096,476 - 131,123,152 (+)EnsemblGRCh38hg38GRCh38
GRCh379133,971,918 - 133,998,531 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369132,961,733 - 132,988,360 (+)NCBINCBI36Build 36hg18NCBI36
Build 349131,001,465 - 131,028,093NCBI
Celera9104,510,955 - 104,537,611 (+)NCBICelera
Cytogenetic Map9q34.12-q34.13NCBI
HuRef9103,462,597 - 103,489,133 (+)NCBIHuRef
CHM1_19134,121,047 - 134,147,670 (+)NCBICHM1_1
T2T-CHM13v2.09143,304,798 - 143,331,382 (+)NCBIT2T-CHM13v2.0
Aif1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39231,840,315 - 31,863,454 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl231,840,151 - 31,863,454 (+)EnsemblGRCm39 Ensembl
GRCm38231,950,303 - 31,973,442 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl231,950,139 - 31,973,442 (+)EnsemblGRCm38mm10GRCm38
MGSCv37231,805,823 - 31,828,962 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36231,772,312 - 31,795,451 (+)NCBIMGSCv36mm8
Celera231,653,266 - 31,676,512 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.95NCBI
Aif1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,627,239 - 35,651,793 (+)NCBIGRCr8
mRatBN7.2315,229,476 - 15,254,033 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,229,524 - 15,254,023 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,302,434 - 18,326,985 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0326,887,419 - 26,911,975 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,134,603 - 25,159,186 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.039,237,944 - 9,262,628 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl39,237,944 - 9,262,628 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0314,598,261 - 14,622,945 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,053,196 - 11,078,079 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1310,945,778 - 10,972,062 (+)NCBI
Celera39,976,750 - 10,001,583 (+)NCBICelera
Cytogenetic Map3p12NCBI
Aif1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955513936,889 - 954,667 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955513936,889 - 954,667 (+)NCBIChiLan1.0ChiLan1.0
AIF1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,228,896 - 8,255,509 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan198,231,238 - 8,257,851 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09102,218,242 - 102,244,846 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19130,865,394 - 130,891,744 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9130,863,031 - 130,891,744 (+)Ensemblpanpan1.1panPan2
AIF1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1952,944,925 - 52,966,953 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl952,947,570 - 52,966,894 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha952,145,653 - 52,167,685 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0953,846,023 - 53,868,058 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl953,846,023 - 53,868,071 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1952,623,528 - 52,645,555 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0952,944,014 - 52,966,040 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0953,037,079 - 53,059,133 (-)NCBIUU_Cfam_GSD_1.0
Aif1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,193,397 - 198,211,193 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648717,961,854 - 17,979,749 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648717,961,922 - 17,979,721 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AIF1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1271,072,734 - 271,102,803 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11271,075,376 - 271,099,984 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21305,102,354 - 305,127,760 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AIF1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1127,016,619 - 7,043,663 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl127,016,398 - 7,043,575 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660798,457,744 - 8,484,869 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004849100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01040446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSHGLT00000023867   ⟹   ENSHGLP00000023649
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247604,739,793 - 4,757,280 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000023868   ⟹   ENSHGLP00000023650
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247604,742,532 - 4,757,210 (-)Ensembl
RefSeq Acc Id: XM_004849100   ⟹   XP_004849157
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247604,739,886 - 4,757,291 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004849157 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000023649
RefSeq Acc Id: XP_004849157   ⟸   XM_004849100
- UniProtKB: G5AT57 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000023650   ⟸   ENSHGLT00000023868
RefSeq Acc Id: ENSHGLP00000023649   ⟸   ENSHGLT00000023867


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016871 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000023867 ENTREZGENE
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro AIF-1_EF_pair UniProtKB/TrEMBL
  AIF1/AIF1L UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene Aif1l ENTREZGENE
PANTHER ALLOGRAFT INFLAMMATORY FACTOR 1-LIKE UniProtKB/TrEMBL
  ALLOGRAFT INFLAMMATORY FACTOR-1 UniProtKB/TrEMBL
Pfam AIF-1 UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
Superfamily-SCOP EF-hand UniProtKB/TrEMBL
UniProt G5AT57 ENTREZGENE, UniProtKB/TrEMBL