Dars1 (aspartyl-tRNA synthetase 1) - Rat Genome Database

Send us a Message



Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Dars1 (aspartyl-tRNA synthetase 1) Chinchilla lanigera
Analyze
Symbol: Dars1
Name: aspartyl-tRNA synthetase 1
RGD ID: 8963310
Description: ENCODES a protein that exhibits aspartate-tRNA ligase activity (ortholog); INVOLVED IN aspartyl-tRNA aminoacylation (ortholog); PARTICIPATES IN Canavan disease pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); autistic disorder (ortholog); Breast Cancer, Familial (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: aspartate--tRNA ligase, cytoplasmic; aspartyl-tRNA synthetase; Dars
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554403,266,821 - 3,345,808 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554403,268,648 - 3,345,808 (-)NCBIChiLan1.0ChiLan1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dars1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554403,266,821 - 3,345,808 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554403,268,648 - 3,345,808 (-)NCBIChiLan1.0ChiLan1.0
DARS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382135,905,881 - 135,985,684 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2135,904,936 - 135,986,100 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh372136,663,451 - 136,743,254 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362136,380,724 - 136,459,692 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342136,497,985 - 136,576,954NCBI
Celera2130,374,979 - 130,453,946 (-)NCBICelera
Cytogenetic Map2q21.3NCBI
HuRef2128,656,738 - 128,735,990 (-)NCBIHuRef
CHM1_12136,669,650 - 136,748,607 (-)NCBICHM1_1
T2T-CHM13v2.02136,350,305 - 136,430,110 (-)NCBIT2T-CHM13v2.0
Dars1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391128,291,444 - 128,345,153 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1128,289,511 - 128,345,161 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381128,363,707 - 128,417,416 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1128,363,707 - 128,417,368 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv371130,260,284 - 130,313,993 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361130,191,253 - 130,244,884 (-)NCBIMGSCv36mm8
Celera1130,992,060 - 131,045,578 (-)NCBICelera
Cytogenetic Map1E3NCBI
cM Map155.8NCBI
Dars1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81342,410,351 - 42,465,467 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1342,379,162 - 42,465,467 (-)EnsemblGRCr8
mRatBN7.21339,857,936 - 39,913,055 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1339,857,936 - 39,913,116 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1342,451,676 - 42,506,974 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01343,739,779 - 43,795,077 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01340,993,748 - 41,048,901 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1341,787,338 - 41,842,306 (-)NCBI
Lyon_Normotensive1342,002,233 - 42,057,349 (-)NCBI
Lyon_Hypertensive1341,978,675 - 42,033,791 (-)NCBI
F344_StmMcwi1341,922,799 - 41,978,103 (-)NCBI
Rnor_6.01345,074,067 - 45,127,815 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1345,074,072 - 45,127,815 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01350,158,677 - 50,212,300 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41341,077,395 - 41,132,513 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1340,231,977 - 40,287,207 (-)NCBICelera
RGSC_v3.11341,090,911 - 41,146,678 (-)NCBI
Cytogenetic Map13q13NCBI
DARS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21338,945,632 - 39,025,072 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B38,960,584 - 39,040,041 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B23,876,931 - 23,956,032 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B139,977,483 - 140,056,836 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B139,977,483 - 140,056,836 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
DARS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11938,690,170 - 38,751,360 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1938,668,527 - 38,751,310 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1938,933,151 - 38,994,341 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01940,135,547 - 40,196,455 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1940,135,551 - 40,196,464 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11938,777,495 - 38,838,663 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01938,937,306 - 38,998,504 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01940,169,840 - 40,230,688 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dars1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap17108,673,231 - 108,731,468 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_024405303101,638,433 - 101,696,530 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646939,921,120 - 39,979,323 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493646939,921,182 - 39,979,297 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DARS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1515,810,618 - 15,885,706 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.11515,810,497 - 15,885,706 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21518,269,726 - 18,344,247 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DARS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11021,493,013 - 21,574,031 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_0236660612,261,198 - 2,342,266 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.11020,120,999 - 20,202,019 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1020,119,914 - 20,201,991 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Dars1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473235,266,830 - 35,337,610 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_00462473235,266,830 - 35,337,645 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl3121,045,194 - 121,144,424 (+)Ensembl
Dars1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1107,303,812 - 7,353,830 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000009236   ⟹   ENSCLAP00000009107
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554403,266,821 - 3,345,808 (-)Ensembl
RefSeq Acc Id: XM_013517491   ⟹   XP_013372945
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554403,268,648 - 3,345,808 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013372945 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009107
  ENSCLAP00000009107.1
RefSeq Acc Id: XP_013372945   ⟸   XM_013517491
- UniProtKB: A0A8C2V2E8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000009107   ⟸   ENSCLAT00000009236

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006355 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009236 ENTREZGENE
  ENSCLAT00000009236.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
  Bira Bifunctional Protein, Domain 2 UniProtKB/TrEMBL
InterPro Aa-tRNA-synt_II UniProtKB/TrEMBL
  aa-tRNA-synth_II UniProtKB/TrEMBL
  aa-tRNA-synth_II/BPL/LPL UniProtKB/TrEMBL
  Asp-tRNA_synthase_2 UniProtKB/TrEMBL
  Asp/Asn-tRNA-synth_IIb UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
  NA-bd_OB_tRNA UniProtKB/TrEMBL
NCBI Gene Dars ENTREZGENE
PANTHER ASPARTATE--TRNA LIGASE, CYTOPLASMIC UniProtKB/TrEMBL
  PTHR43450 UniProtKB/TrEMBL
Pfam tRNA-synt_2 UniProtKB/TrEMBL
  tRNA_anti-codon UniProtKB/TrEMBL
PRINTS TRNASYNTHASP UniProtKB/TrEMBL
PROSITE AA_TRNA_LIGASE_II UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/TrEMBL
  SSF55681 UniProtKB/TrEMBL
UniProt A0A8C2V2E8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-23 Dars1  aspartyl-tRNA synthetase 1  Dars  aspartyl-tRNA synthetase  Symbol and/or name change 5135510 APPROVED