Csnk1g3 (casein kinase 1 gamma 3) - Rat Genome Database

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Gene: Csnk1g3 (casein kinase 1 gamma 3) Chinchilla lanigera
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Symbol: Csnk1g3
Name: casein kinase 1 gamma 3
RGD ID: 8962681
Description: ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN protein autophosphorylation (ortholog); protein phosphorylation (ortholog); PARTICIPATES IN Hedgehog signaling pathway; p53 signaling pathway; ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: casein kinase 1, gamma 3; casein kinase I isoform gamma-3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555211,660,090 - 1,721,874 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555211,660,090 - 1,721,811 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Csnk1g3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555211,660,090 - 1,721,874 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555211,660,090 - 1,721,811 (+)NCBIChiLan1.0ChiLan1.0
CSNK1G3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385123,512,177 - 123,617,049 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5123,512,177 - 123,617,049 (+)EnsemblGRCh38hg38GRCh38
GRCh375122,847,871 - 122,952,743 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365122,875,692 - 122,980,364 (+)NCBINCBI36Build 36hg18NCBI36
Build 345122,909,226 - 122,979,039NCBI
Celera5118,803,181 - 118,907,853 (+)NCBICelera
Cytogenetic Map5q23.2NCBI
HuRef5118,036,056 - 118,141,228 (+)NCBIHuRef
CHM1_15122,280,390 - 122,385,357 (+)NCBICHM1_1
T2T-CHM13v2.05124,028,409 - 124,133,283 (+)NCBIT2T-CHM13v2.0
Csnk1g3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391853,995,154 - 54,088,756 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1853,995,194 - 54,088,620 (+)EnsemblGRCm39 Ensembl
GRCm381853,862,082 - 53,955,684 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1853,862,122 - 53,955,548 (+)EnsemblGRCm38mm10GRCm38
MGSCv371854,021,767 - 54,115,338 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361854,032,013 - 54,080,917 (+)NCBIMGSCv36mm8
Celera1855,159,385 - 55,248,672 (+)NCBICelera
Cytogenetic Map18D1- D2NCBI
cM Map1829.1NCBI
Csnk1g3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81849,497,839 - 49,584,828 (+)NCBIGRCr8
mRatBN7.21847,299,547 - 47,386,538 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1847,299,579 - 47,386,535 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1849,359,291 - 49,446,305 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01850,060,155 - 50,147,419 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01847,865,239 - 47,952,264 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01848,831,209 - 48,913,341 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1848,853,418 - 48,911,122 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01848,043,786 - 48,126,393 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41849,369,579 - 49,451,893 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11849,428,864 - 49,487,465 (+)NCBI
Celera1845,466,118 - 45,564,958 (+)NCBICelera
Cytogenetic Map18q11NCBI
CSNK1G3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24118,796,019 - 118,903,270 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15116,949,663 - 117,056,936 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05118,903,016 - 119,008,030 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15124,683,567 - 124,786,916 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5124,683,566 - 124,786,916 (+)Ensemblpanpan1.1panPan2
CSNK1G3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,357,816 - 13,465,708 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,357,894 - 13,464,138 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,138,614 - 12,246,367 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01114,062,805 - 14,170,567 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1114,062,781 - 14,170,558 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,804,383 - 12,912,563 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,651,006 - 12,759,159 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,253,204 - 13,361,087 (+)NCBIUU_Cfam_GSD_1.0
Csnk1g3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213135,797,432 - 135,888,149 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365753,878,604 - 3,965,758 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365753,858,996 - 3,965,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSNK1G3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2127,017,026 - 127,129,543 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12127,013,736 - 127,129,547 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22132,404,785 - 132,482,848 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSNK1G3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12326,555,606 - 26,659,412 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2326,588,776 - 26,657,048 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603451,464,061 - 51,568,783 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csnk1g3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477418,384,941 - 18,494,964 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477418,383,645 - 18,495,013 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000001874   ⟹   ENSCLAP00000001831
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555211,660,090 - 1,721,874 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000001875   ⟹   ENSCLAP00000001832
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555211,660,090 - 1,721,811 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000001876   ⟹   ENSCLAP00000001833
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555211,660,098 - 1,721,874 (+)Ensembl
RefSeq Acc Id: XM_005409308   ⟹   XP_005409365
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555211,660,090 - 1,721,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005409309   ⟹   XP_005409366
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555211,660,090 - 1,721,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005409310   ⟹   XP_005409367
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555211,660,090 - 1,721,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005409311   ⟹   XP_005409368
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555211,660,090 - 1,721,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005409312   ⟹   XP_005409369
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555211,660,090 - 1,721,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005409314   ⟹   XP_005409371
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555211,660,090 - 1,721,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005409315   ⟹   XP_005409372
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555211,660,090 - 1,721,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005409316   ⟹   XP_005409373
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555211,660,090 - 1,721,811 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005409365   ⟸   XM_005409308
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005409368   ⟸   XM_005409311
- Peptide Label: isoform X4
- UniProtKB: A0A8C2ULE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005409367   ⟸   XM_005409310
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005409371   ⟸   XM_005409314
- Peptide Label: isoform X6
- UniProtKB: A0A8C2UJJ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005409373   ⟸   XM_005409316
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005409366   ⟸   XM_005409309
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YIT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005409369   ⟸   XM_005409312
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_005409372   ⟸   XM_005409315
- Peptide Label: isoform X7
- Sequence:
Ensembl Acc Id: ENSCLAP00000001833   ⟸   ENSCLAT00000001876
Ensembl Acc Id: ENSCLAP00000001832   ⟸   ENSCLAT00000001875
Ensembl Acc Id: ENSCLAP00000001831   ⟸   ENSCLAT00000001874
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001361 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001874 ENTREZGENE
  ENSCLAT00000001874.1 UniProtKB/TrEMBL
  ENSCLAT00000001875 ENTREZGENE
  ENSCLAT00000001875.1 UniProtKB/TrEMBL
  ENSCLAT00000001876 ENTREZGENE
  ENSCLAT00000001876.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Casein_kinase-1_gamma_C UniProtKB/TrEMBL
  CK1_Ser-Thr_kinase UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene Csnk1g3 ENTREZGENE
PANTHER CASEIN KINASE I ISOFORM GAMMA-3 UniProtKB/TrEMBL
  CASEIN KINASE-RELATED UniProtKB/TrEMBL
Pfam CK1gamma_C UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A8C2UJJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2ULE3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YIT9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Csnk1g3  casein kinase 1 gamma 3    casein kinase 1, gamma 3  Symbol and/or name change 5135510 APPROVED