Csnk1g3 (casein kinase 1, gamma 3) - Rat Genome Database

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Gene: Csnk1g3 (casein kinase 1, gamma 3) Mus musculus
Analyze
Symbol: Csnk1g3
Name: casein kinase 1, gamma 3
RGD ID: 1331990
MGI Page MGI
Description: Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in endocytosis; positive regulation of canonical Wnt signaling pathway; and signal transduction. Predicted to act upstream of or within Wnt signaling pathway and phosphorylation. Predicted to be active in cytoplasm; nucleus; and plasma membrane. Is expressed in central nervous system; heart; jaw bone; and retina. Orthologous to human CSNK1G3 (casein kinase 1 gamma 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3300002K07Rik; C330049O21Rik; casein kinase I; casein kinase I isoform gamma-3; CKI-gamma 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm14584  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391853,995,154 - 54,088,756 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1853,995,194 - 54,088,620 (+)EnsemblGRCm39 Ensembl
GRCm381853,862,082 - 53,955,684 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1853,862,122 - 53,955,548 (+)EnsemblGRCm38mm10GRCm38
MGSCv371854,021,767 - 54,115,338 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361854,032,013 - 54,080,917 (+)NCBIMGSCv36mm8
Celera1855,159,385 - 55,248,672 (+)NCBICelera
Cytogenetic Map18D1- D2NCBI
cM Map1829.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
nucleus  (IBA)
plasma membrane  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11322760   PMID:11544199   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:17967808   PMID:18799693   PMID:20833366   PMID:21267068   PMID:21677750   PMID:21873635   PMID:30973865   PMID:30995482   PMID:31801942   PMID:38187761  


Genomics

Comparative Map Data
Csnk1g3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391853,995,154 - 54,088,756 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1853,995,194 - 54,088,620 (+)EnsemblGRCm39 Ensembl
GRCm381853,862,082 - 53,955,684 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1853,862,122 - 53,955,548 (+)EnsemblGRCm38mm10GRCm38
MGSCv371854,021,767 - 54,115,338 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361854,032,013 - 54,080,917 (+)NCBIMGSCv36mm8
Celera1855,159,385 - 55,248,672 (+)NCBICelera
Cytogenetic Map18D1- D2NCBI
cM Map1829.1NCBI
CSNK1G3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385123,512,177 - 123,617,049 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5123,512,177 - 123,617,049 (+)EnsemblGRCh38hg38GRCh38
GRCh375122,847,871 - 122,952,743 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365122,875,692 - 122,980,364 (+)NCBINCBI36Build 36hg18NCBI36
Build 345122,909,226 - 122,979,039NCBI
Celera5118,803,181 - 118,907,853 (+)NCBICelera
Cytogenetic Map5q23.2NCBI
HuRef5118,036,056 - 118,141,228 (+)NCBIHuRef
CHM1_15122,280,390 - 122,385,357 (+)NCBICHM1_1
T2T-CHM13v2.05124,028,409 - 124,133,283 (+)NCBIT2T-CHM13v2.0
Csnk1g3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81849,497,839 - 49,584,828 (+)NCBIGRCr8
mRatBN7.21847,299,547 - 47,386,538 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1847,299,579 - 47,386,535 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1849,359,291 - 49,446,305 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01850,060,155 - 50,147,419 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01847,865,239 - 47,952,264 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01848,831,209 - 48,913,341 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1848,853,418 - 48,911,122 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01848,043,786 - 48,126,393 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41849,369,579 - 49,451,893 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11849,428,864 - 49,487,465 (+)NCBI
Celera1845,466,118 - 45,564,958 (+)NCBICelera
Cytogenetic Map18q11NCBI
Csnk1g3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555211,660,090 - 1,721,874 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555211,660,090 - 1,721,811 (+)NCBIChiLan1.0ChiLan1.0
CSNK1G3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24118,796,019 - 118,903,270 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15116,949,663 - 117,056,936 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05118,903,016 - 119,008,030 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15124,683,567 - 124,786,916 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5124,683,566 - 124,786,916 (+)Ensemblpanpan1.1panPan2
CSNK1G3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,357,816 - 13,465,708 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,357,894 - 13,464,138 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,138,614 - 12,246,367 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01114,062,805 - 14,170,567 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1114,062,781 - 14,170,558 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,804,383 - 12,912,563 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,651,006 - 12,759,159 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,253,204 - 13,361,087 (+)NCBIUU_Cfam_GSD_1.0
Csnk1g3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213135,797,432 - 135,888,149 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365753,878,604 - 3,965,758 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365753,858,996 - 3,965,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSNK1G3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2127,017,026 - 127,129,543 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12127,013,736 - 127,129,547 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22132,404,785 - 132,482,848 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSNK1G3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12326,555,606 - 26,659,412 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2326,588,776 - 26,657,048 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603451,464,061 - 51,568,783 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csnk1g3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477418,384,941 - 18,494,964 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477418,383,645 - 18,495,013 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Csnk1g3
3277 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:797
Count of miRNA genes:482
Interacting mature miRNAs:585
Transcripts:ENSMUST00000069597
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
10412184Sstapa1_mSuseptibility to Staphylococus aureus infection 1 (mouse)Not determined184654154657590708Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
27226720Tibw5_mtibia width 5, proximal, 10 week (mouse)185043306762633071Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185296615668778777Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185329102276914293Mouse

Markers in Region
BE200278  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381853,862,202 - 53,862,314UniSTSGRCm38
MGSCv371854,021,856 - 54,021,968UniSTSGRCm37
Cytogenetic Map18D1-D2UniSTS
Whitehead/MRC_RH18737.32UniSTS
UniSTS:237807  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381853,954,291 - 53,954,575UniSTSGRCm38
MGSCv371854,113,945 - 54,114,229UniSTSGRCm37
Celera1855,247,279 - 55,247,563UniSTS
Cytogenetic Map18D1-D2UniSTS
UniSTS:237808  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381853,866,515 - 53,866,752UniSTSGRCm38
MGSCv371854,026,169 - 54,026,406UniSTSGRCm37
Celera1855,163,703 - 55,163,940UniSTS
Cytogenetic Map18D1-D2UniSTS
Csnk1g3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381853,954,291 - 53,955,315UniSTSGRCm38
MGSCv371854,113,945 - 54,114,969UniSTSGRCm37
Celera1855,247,279 - 55,248,303UniSTS
Cytogenetic Map18D1-D2UniSTS
cM Map18 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_152809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC127368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ279839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ443928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY729947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN454971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000069597   ⟹   ENSMUSP00000070259
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1853,995,194 - 54,088,620 (+)Ensembl
GRCm38.p6 Ensembl1853,862,122 - 53,955,548 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236399   ⟹   ENSMUSP00000158167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1854,065,316 - 54,081,743 (+)Ensembl
GRCm38.p6 Ensembl1853,932,244 - 53,948,671 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237880   ⟹   ENSMUSP00000158175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1853,995,260 - 54,086,545 (+)Ensembl
GRCm38.p6 Ensembl1853,862,188 - 53,953,473 (+)Ensembl
RefSeq Acc Id: NM_152809   ⟹   NP_690022
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,995,185 - 54,088,756 (+)NCBI
GRCm381853,862,113 - 53,955,684 (+)NCBI
MGSCv371854,021,767 - 54,115,338 (+)RGD
Celera1855,159,385 - 55,248,672 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006526230   ⟹   XP_006526293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,995,154 - 54,088,650 (+)NCBI
GRCm381853,862,082 - 53,955,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006526231   ⟹   XP_006526294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,995,154 - 54,088,650 (+)NCBI
GRCm381853,862,082 - 53,955,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006526232   ⟹   XP_006526295
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,995,154 - 54,088,650 (+)NCBI
GRCm381853,862,082 - 53,955,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006526233   ⟹   XP_006526296
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,995,154 - 54,088,650 (+)NCBI
GRCm381853,862,082 - 53,955,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006526234   ⟹   XP_006526297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,995,154 - 54,088,650 (+)NCBI
GRCm381853,862,082 - 53,955,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006526235   ⟹   XP_006526298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,995,154 - 54,088,650 (+)NCBI
GRCm381853,862,082 - 53,955,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006526236   ⟹   XP_006526299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,995,154 - 54,088,650 (+)NCBI
GRCm381853,862,082 - 53,955,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006526237   ⟹   XP_006526300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391853,995,154 - 54,088,650 (+)NCBI
GRCm381853,862,082 - 53,955,578 (+)NCBI
Sequence:
RefSeq Acc Id: NP_690022   ⟸   NM_152809
- UniProtKB: Q8C001 (UniProtKB/Swiss-Prot),   Q8BM57 (UniProtKB/Swiss-Prot),   Q8K079 (UniProtKB/Swiss-Prot),   Q8C4X2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006526295   ⟸   XM_006526232
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006526293   ⟸   XM_006526230
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006526294   ⟸   XM_006526231
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006526296   ⟸   XM_006526233
- Peptide Label: isoform X4
- UniProtKB: A0A494BAP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006526297   ⟸   XM_006526234
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006526299   ⟸   XM_006526236
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006526298   ⟸   XM_006526235
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006526300   ⟸   XM_006526237
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSMUSP00000158175   ⟸   ENSMUST00000237880
RefSeq Acc Id: ENSMUSP00000158167   ⟸   ENSMUST00000236399
RefSeq Acc Id: ENSMUSP00000070259   ⟸   ENSMUST00000069597
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C4X2-F1-model_v2 AlphaFold Q8C4X2 1-424 view protein structure

Promoters
RGD ID:13677816
Promoter ID:EPDNEW_M23057
Type:initiation region
Name:Csnk1g3_1
Description:Mus musculus casein kinase 1, gamma 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381853,862,136 - 53,862,196EPDNEW
RGD ID:6829160
Promoter ID:MM_KWN:25303
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_152809
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361854,021,476 - 54,022,077 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917675 AgrOrtholog
Ensembl Genes ENSMUSG00000024540
  ENSMUSG00000073563 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000069597 ENTREZGENE
  ENSMUST00000069597.8 UniProtKB/Swiss-Prot
  ENSMUST00000236399.2 UniProtKB/TrEMBL
  ENSMUST00000237880 ENTREZGENE
  ENSMUST00000237880.2 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Casein_kinase-1_gamma_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:70425 UniProtKB/Swiss-Prot
MGD MGI:1917675 ENTREZGENE
NCBI Gene 70425 ENTREZGENE
PANTHER CASEIN KINASE I ISOFORM GAMMA-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CASEIN KINASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CK1gamma_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Csnk1g3 PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494BAN5_MOUSE UniProtKB/TrEMBL
  A0A494BAP2 ENTREZGENE, UniProtKB/TrEMBL
  KC1G3_MOUSE UniProtKB/Swiss-Prot
  Q8BM57 ENTREZGENE
  Q8C001 ENTREZGENE
  Q8C4X2 ENTREZGENE
  Q8K079 ENTREZGENE
UniProt Secondary Q8BM57 UniProtKB/Swiss-Prot
  Q8C001 UniProtKB/Swiss-Prot
  Q8K079 UniProtKB/Swiss-Prot