Plag1 (PLAG1 zinc finger) - Rat Genome Database

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Gene: Plag1 (PLAG1 zinc finger) Chinchilla lanigera
Analyze
Symbol: Plag1
Name: PLAG1 zinc finger
RGD ID: 8956577
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN gland morphogenesis (ortholog); multicellular organism growth (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pleiomorphic adenoma gene 1; zinc finger protein PLAG1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545415,239,042 - 15,281,669 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545415,239,042 - 15,281,669 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (ISO)
cytosol  (ISO)
nuclear speck  (ISO)
nucleoplasm  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data
Plag1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545415,239,042 - 15,281,669 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545415,239,042 - 15,281,669 (-)NCBIChiLan1.0ChiLan1.0
PLAG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38856,160,909 - 56,211,273 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl856,160,909 - 56,211,324 (-)EnsemblGRCh38hg38GRCh38
GRCh37857,073,468 - 57,123,832 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36857,236,037 - 57,286,392 (-)NCBINCBI36Build 36hg18NCBI36
Build 34857,236,036 - 57,286,392NCBI
Celera853,064,260 - 53,082,827 (-)NCBICelera
Cytogenetic Map8q12.1NCBI
HuRef852,540,946 - 52,591,254 (-)NCBIHuRef
CHM1_1857,125,297 - 57,175,697 (-)NCBICHM1_1
T2T-CHM13v2.0856,537,883 - 56,588,262 (-)NCBIT2T-CHM13v2.0
Plag1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3943,895,209 - 3,938,429 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl43,900,996 - 3,938,423 (-)EnsemblGRCm39 Ensembl
GRCm3843,898,769 - 3,938,430 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl43,900,996 - 3,938,423 (-)EnsemblGRCm38mm10GRCm38
MGSCv3743,828,305 - 3,865,552 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3643,829,756 - 3,865,529 (-)NCBIMGSCv36mm8
Celera43,857,688 - 3,895,036 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map42.18NCBI
Plag1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8521,699,650 - 21,754,325 (-)NCBIGRCr8
mRatBN7.2516,902,057 - 16,956,727 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl516,905,394 - 16,913,647 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx519,156,087 - 19,164,167 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0520,754,576 - 20,762,656 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0520,506,071 - 20,514,151 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0516,788,186 - 16,842,827 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl516,791,523 - 16,799,776 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0521,565,875 - 21,584,631 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4517,214,930 - 17,223,197 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1517,214,938 - 17,223,197 (-)NCBI
Celera516,279,969 - 16,288,236 (-)NCBICelera
Cytogenetic Map5q12NCBI
PLAG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2771,818,630 - 71,869,048 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1847,543,472 - 47,593,656 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0852,607,398 - 52,657,808 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1849,978,292 - 50,028,591 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl849,983,627 - 50,028,591 (-)Ensemblpanpan1.1panPan2
PLAG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1297,563,804 - 7,608,819 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl297,564,596 - 7,608,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha297,871,731 - 7,921,444 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0297,633,248 - 7,683,215 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl297,636,479 - 7,683,212 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1297,647,839 - 7,697,595 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0297,779,563 - 7,829,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0298,056,328 - 8,106,311 (-)NCBIUU_Cfam_GSD_1.0
Plag1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530371,929,956 - 71,975,601 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364962,814,583 - 2,855,527 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364962,809,878 - 2,855,515 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLAG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl475,646,584 - 75,694,117 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1475,646,585 - 75,696,718 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2482,594,992 - 82,612,789 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLAG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1852,200,365 - 52,250,938 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl852,203,467 - 52,250,918 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603989,546,317 - 89,596,893 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plag1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248863,827,937 - 3,868,179 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248863,827,944 - 3,873,124 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000020400   ⟹   ENSCLAP00000020205
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545415,239,042 - 15,281,669 (-)Ensembl
RefSeq Acc Id: XM_005396081   ⟹   XP_005396138
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545415,239,042 - 15,281,669 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013520253   ⟹   XP_013375707
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545415,239,042 - 15,281,669 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005396138 (Get FASTA)   NCBI Sequence Viewer  
  XP_013375707 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020205
  ENSCLAP00000020205.1
RefSeq Acc Id: XP_005396138   ⟸   XM_005396081
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VVB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375707   ⟸   XM_013520253
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSCLAP00000020205   ⟸   ENSCLAT00000020400
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013839 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020400 ENTREZGENE
  ENSCLAT00000020400.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Plag1 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN PLAGL2 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_4 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8C2VVB5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Plag1  PLAG1 zinc finger    pleiomorphic adenoma gene 1  Symbol and/or name change 5135510 APPROVED