Plag1 (PLAG1 zinc finger) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Plag1 (PLAG1 zinc finger) Ictidomys tridecemlineatus
Analyze
Symbol: Plag1
Name: PLAG1 zinc finger
RGD ID: 12546838
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN gland morphogenesis (ortholog); multicellular organism growth (ortholog); organ growth (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN centrosome (inferred); cytosol (inferred); nuclear speck (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PLAG1 zinc finger, transcript variant X1; PLAG1 zinc finger, transcript variant X2; PLAG1 zinc finger, transcript variant X3; PLAG1 zinc finger, transcript variant X4; PLAG1 zinc finger, transcript variant X5; PLAG1 zinc finger, transcript variant X6; zinc finger protein PLAG1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530371,929,956 - 71,975,601 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364962,814,583 - 2,855,527 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364962,809,878 - 2,855,515 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (IEA)
cytosol  (IEA)
nuclear speck  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

References

Genomics

Comparative Map Data
Plag1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530371,929,956 - 71,975,601 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364962,814,583 - 2,855,527 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364962,809,878 - 2,855,515 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLAG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38856,160,909 - 56,211,273 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl856,160,909 - 56,211,324 (-)EnsemblGRCh38hg38GRCh38
GRCh37857,073,468 - 57,123,832 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36857,236,037 - 57,286,392 (-)NCBINCBI36Build 36hg18NCBI36
Build 34857,236,036 - 57,286,392NCBI
Celera853,064,260 - 53,082,827 (-)NCBICelera
Cytogenetic Map8q12.1NCBI
HuRef852,540,946 - 52,591,254 (-)NCBIHuRef
CHM1_1857,125,297 - 57,175,697 (-)NCBICHM1_1
T2T-CHM13v2.0856,537,883 - 56,588,262 (-)NCBIT2T-CHM13v2.0
Plag1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3943,895,209 - 3,938,429 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl43,900,996 - 3,938,423 (-)EnsemblGRCm39 Ensembl
GRCm3843,898,769 - 3,938,430 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl43,900,996 - 3,938,423 (-)EnsemblGRCm38mm10GRCm38
MGSCv3743,828,305 - 3,865,552 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3643,829,756 - 3,865,529 (-)NCBIMGSCv36mm8
Celera43,857,688 - 3,895,036 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map42.18NCBI
Plag1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8521,699,650 - 21,754,325 (-)NCBIGRCr8
mRatBN7.2516,902,057 - 16,956,727 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl516,905,394 - 16,913,647 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx519,156,087 - 19,164,167 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0520,754,576 - 20,762,656 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0520,506,071 - 20,514,151 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0516,788,186 - 16,842,827 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl516,791,523 - 16,799,776 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0521,565,875 - 21,584,631 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4517,214,930 - 17,223,197 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1517,214,938 - 17,223,197 (-)NCBI
Celera516,279,969 - 16,288,236 (-)NCBICelera
Cytogenetic Map5q12NCBI
Plag1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545415,239,042 - 15,281,669 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545415,239,042 - 15,281,669 (-)NCBIChiLan1.0ChiLan1.0
PLAG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2771,818,630 - 71,869,048 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1847,543,472 - 47,593,656 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0852,607,398 - 52,657,808 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1849,978,292 - 50,028,591 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl849,983,627 - 50,028,591 (-)Ensemblpanpan1.1panPan2
PLAG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1297,563,804 - 7,608,819 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl297,564,596 - 7,608,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha297,871,731 - 7,921,444 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0297,633,248 - 7,683,215 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl297,636,479 - 7,683,212 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1297,647,839 - 7,697,595 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0297,779,563 - 7,829,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0298,056,328 - 8,106,311 (-)NCBIUU_Cfam_GSD_1.0
PLAG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl475,646,584 - 75,694,117 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1475,646,585 - 75,696,718 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2482,594,992 - 82,612,789 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLAG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1852,200,365 - 52,250,938 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl852,203,467 - 52,250,918 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603989,546,317 - 89,596,893 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plag1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248863,827,937 - 3,868,179 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248863,827,944 - 3,873,124 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000002708   ⟹   ENSSTOP00000002424
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364962,814,885 - 2,825,602 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000034700   ⟹   ENSSTOP00000024959
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364962,814,583 - 2,855,515 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000038727   ⟹   ENSSTOP00000024585
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364962,814,885 - 2,855,527 (-)Ensembl
RefSeq Acc Id: XM_005322923   ⟹   XP_005322980
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530371,929,956 - 71,975,601 (+)NCBI
SpeTri2.0NW_0049364962,809,878 - 2,855,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005322924   ⟹   XP_005322981
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530371,929,956 - 71,975,601 (+)NCBI
SpeTri2.0NW_0049364962,809,878 - 2,855,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005322925   ⟹   XP_005322982
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530371,929,956 - 71,975,601 (+)NCBI
SpeTri2.0NW_0049364962,812,865 - 2,855,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021724874   ⟹   XP_021580549
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530371,929,956 - 71,975,601 (+)NCBI
SpeTri2.0NW_0049364962,812,865 - 2,855,506 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021724876   ⟹   XP_021580551
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530371,929,956 - 71,975,601 (+)NCBI
SpeTri2.0NW_0049364962,812,865 - 2,855,506 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040294044   ⟹   XP_040149978
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530371,929,956 - 71,975,601 (+)NCBI
RefSeq Acc Id: XM_040294045   ⟹   XP_040149979
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530371,964,956 - 71,975,601 (+)NCBI
RefSeq Acc Id: XP_005322981   ⟸   XM_005322924
- Peptide Label: isoform X1
- UniProtKB: I3M0Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005322980   ⟸   XM_005322923
- Peptide Label: isoform X1
- UniProtKB: I3M0Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005322982   ⟸   XM_005322925
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021580551   ⟸   XM_021724876
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021580549   ⟸   XM_021724874
- Peptide Label: isoform X1
- UniProtKB: I3M0Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040149978   ⟸   XM_040294044
- Peptide Label: isoform X1
- UniProtKB: I3M0Y6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040149979   ⟸   XM_040294045
- Peptide Label: isoform X2
Ensembl Acc Id: ENSSTOP00000002424   ⟸   ENSSTOT00000002708
Ensembl Acc Id: ENSSTOP00000024585   ⟸   ENSSTOT00000038727
Ensembl Acc Id: ENSSTOP00000024959   ⟸   ENSSTOT00000034700
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002716 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002708.3 UniProtKB/TrEMBL
  ENSSTOT00000034700.1 UniProtKB/TrEMBL
  ENSSTOT00000038727.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Plag1 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN PLAGL2 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt I3M0Y6 ENTREZGENE, UniProtKB/TrEMBL