PLAG1 (PLAG1 zinc finger) - Rat Genome Database

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Gene: PLAG1 (PLAG1 zinc finger) Chlorocebus sabaeus
Analyze
Symbol: PLAG1
Name: PLAG1 zinc finger
RGD ID: 18553821
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN gland morphogenesis (ortholog); multicellular organism growth (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Lipoblastoma (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein PLAG1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1852,200,365 - 52,250,938 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl852,203,467 - 52,250,918 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603989,546,317 - 89,596,893 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
PLAG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1852,200,365 - 52,250,938 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl852,203,467 - 52,250,918 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603989,546,317 - 89,596,893 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PLAG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38856,160,909 - 56,211,273 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl856,160,909 - 56,211,324 (-)EnsemblGRCh38hg38GRCh38
GRCh37857,073,468 - 57,123,832 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36857,236,037 - 57,286,392 (-)NCBINCBI36Build 36hg18NCBI36
Build 34857,236,036 - 57,286,392NCBI
Celera853,064,260 - 53,082,827 (-)NCBICelera
Cytogenetic Map8q12.1NCBI
HuRef852,540,946 - 52,591,254 (-)NCBIHuRef
CHM1_1857,125,297 - 57,175,697 (-)NCBICHM1_1
T2T-CHM13v2.0856,537,883 - 56,588,262 (-)NCBIT2T-CHM13v2.0
Plag1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3943,895,209 - 3,938,429 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl43,900,996 - 3,938,423 (-)EnsemblGRCm39 Ensembl
GRCm3843,898,769 - 3,938,430 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl43,900,996 - 3,938,423 (-)EnsemblGRCm38mm10GRCm38
MGSCv3743,828,305 - 3,865,552 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3643,829,756 - 3,865,529 (-)NCBIMGSCv36mm8
Celera43,857,688 - 3,895,036 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map42.18NCBI
Plag1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8521,699,650 - 21,754,325 (-)NCBIGRCr8
mRatBN7.2516,902,057 - 16,956,727 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl516,905,394 - 16,913,647 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx519,156,087 - 19,164,167 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0520,754,576 - 20,762,656 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0520,506,071 - 20,514,151 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0516,788,186 - 16,842,827 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl516,791,523 - 16,799,776 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0521,565,875 - 21,584,631 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4517,214,930 - 17,223,197 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1517,214,938 - 17,223,197 (-)NCBI
Celera516,279,969 - 16,288,236 (-)NCBICelera
Cytogenetic Map5q12NCBI
Plag1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545415,239,042 - 15,281,669 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545415,239,042 - 15,281,669 (-)NCBIChiLan1.0ChiLan1.0
PLAG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2771,818,630 - 71,869,048 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1847,543,472 - 47,593,656 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0852,607,398 - 52,657,808 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1849,978,292 - 50,028,591 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl849,983,627 - 50,028,591 (-)Ensemblpanpan1.1panPan2
PLAG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1297,563,804 - 7,608,819 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl297,564,596 - 7,608,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha297,871,731 - 7,921,444 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0297,633,248 - 7,683,215 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl297,636,479 - 7,683,212 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1297,647,839 - 7,697,595 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0297,779,563 - 7,829,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0298,056,328 - 8,106,311 (-)NCBIUU_Cfam_GSD_1.0
Plag1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530371,929,956 - 71,975,601 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364962,814,583 - 2,855,527 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364962,809,878 - 2,855,515 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLAG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl475,646,584 - 75,694,117 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1475,646,585 - 75,696,718 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2482,594,992 - 82,612,789 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Plag1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248863,827,937 - 3,868,179 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248863,827,944 - 3,873,124 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 3 3
Low 33 20 57
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000012667   ⟹   ENSCSAP00000010698
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl852,203,467 - 52,250,918 (-)Ensembl
RefSeq Acc Id: XM_008000683   ⟹   XP_007998874
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1852,200,365 - 52,250,938 (-)NCBI
Vero_WHO_p1.0NW_02366603989,546,317 - 89,596,893 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000684   ⟹   XP_007998875
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1852,200,365 - 52,250,938 (-)NCBI
Vero_WHO_p1.0NW_02366603989,546,317 - 89,596,893 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000685   ⟹   XP_007998876
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1852,200,365 - 52,250,937 (-)NCBI
Vero_WHO_p1.0NW_02366603989,546,318 - 89,596,893 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008000686   ⟹   XP_007998877
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1852,200,365 - 52,250,937 (-)NCBI
Vero_WHO_p1.0NW_02366603989,546,318 - 89,596,893 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038000484   ⟹   XP_037856412
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603989,546,318 - 89,596,893 (+)NCBI
RefSeq Acc Id: XM_038000485   ⟹   XP_037856413
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603989,546,318 - 89,596,893 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007998875   ⟸   XM_008000684
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RQ09 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998874   ⟸   XM_008000683
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RQ09 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007998877   ⟸   XM_008000686
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007998876   ⟸   XM_008000685
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000010698   ⟸   ENSCSAT00000012667
RefSeq Acc Id: XP_037856413   ⟸   XM_038000485
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037856412   ⟸   XM_038000484
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014574 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012667.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report csab:103236823 UniProtKB/TrEMBL
NCBI Gene PLAG1 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN PLAGL2 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9RQ09 ENTREZGENE, UniProtKB/TrEMBL