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Gene: Orc4 (origin recognition complex subunit 4) Chinchilla lanigera

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Symbol:

Orc4

Name:

origin recognition complex subunit 4

RGD ID:

8905369

Description:

ENCODES a protein that exhibits DNA replication origin binding (ortholog); nucleotide binding (ortholog); INVOLVED IN DNA replication (ortholog); DNA replication initiation (ortholog); polar body extrusion after meiotic divisions (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Breast Cancer, Familial (ortholog); cervical cancer (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); nuclear origin of replication recognition complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

origin recognition complex, subunit 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	13,932,495 - 14,006,806 (-)	Ensembl		ChiLan1.0 Ensembl
ChiLan1.0	NW_004955440	13,933,896 - 14,006,808 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute myeloid leukemia (ISO)

Breast Cancer, Familial (ISO)

cervical cancer (ISO)

colon adenocarcinoma (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

lung cancer (ISO)

lung squamous cell carcinoma (ISO)

Meier-Gorlin syndrome (ISO)

Meier-Gorlin syndrome 2 (ISO)

ovarian serous cystadenocarcinoma (ISO)

sarcoma (ISO)

thymoma (ISO)

Thyroid Carcinoma, Nonmedullary 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA replication (ISO)

DNA replication initiation (ISO)

polar body extrusion after meiotic divisions (ISO)

protein polymerization (ISO)

Cellular Component

chromosome, telomeric region (ISO)

cytoplasm (ISO)

nuclear origin of replication recognition complex (ISO)

nucleolus (ISO)

nucleoplasm (ISO)

nucleus (ISO)

origin recognition complex (ISO)

Molecular Function

DNA replication origin binding (ISO)

nucleotide binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Orc4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	13,932,495 - 14,006,806 (-)	Ensembl		ChiLan1.0 Ensembl
ChiLan1.0	NW_004955440	13,933,896 - 14,006,808 (-)	NCBI	ChiLan1.0	ChiLan1.0

ORC4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	147,930,396 - 148,021,551 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	147,930,396 - 148,021,784 (-)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	2	148,687,965 - 148,779,120 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	148,408,202 - 148,495,606 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	148,525,463 - 148,612,868	NCBI
Celera	2	142,405,877 - 142,493,295 (-)	NCBI		Celera
Cytogenetic Map	2	q23.1	NCBI
HuRef	2	140,685,335 - 140,777,468 (-)	NCBI		HuRef
CHM1_1	2	148,693,611 - 148,784,819 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	148,380,848 - 148,472,005 (-)	NCBI		T2T-CHM13v2.0

Orc4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	48,792,836 - 48,840,287 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	48,790,203 - 48,840,289 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	48,902,824 - 48,952,902 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	48,902,824 - 48,950,277 (-)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	2	48,758,274 - 48,804,787 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	48,724,861 - 48,771,243 (-)	NCBI		MGSCv36	mm8
Celera	2	50,575,226 - 50,621,420 (-)	NCBI		Celera
Cytogenetic Map	2	C1.1	NCBI
cM Map	2	28.42	NCBI

Orc4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	53,700,046 - 53,743,293 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	53,703,615 - 53,742,264 (-)	Ensembl				GRCr8
mRatBN7.2	3	33,290,844 - 33,334,022 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	33,294,355 - 33,333,824 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	36,677,728 - 36,716,383 (-)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	45,262,461 - 45,301,116 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	43,084,856 - 43,123,482 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	3	51,533,990 - 51,577,115 (-)	NCBI
Lyon_Normotensive	3	58,503,061 - 58,546,136 (-)	NCBI
Lyon_Hypertensive	3	50,460,849 - 50,503,898 (-)	NCBI
F344_StmMcwi	3	31,688,483 - 31,731,610 (-)	NCBI
Rnor_6.0	3	33,034,913 - 33,075,833 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	33,037,034 - 33,075,685 (-)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	3	38,201,914 - 38,240,600 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	29,813,264 - 29,851,852 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	31,495,196 - 31,533,857 (-)	NCBI		Celera
Cytogenetic Map	3	q12	NCBI

ORC4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	26,909,798 - 26,997,388 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	26,924,800 - 27,012,354 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	11,841,808 - 11,931,620 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	152,291,976 - 152,379,639 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	152,292,822 - 152,379,487 (-)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

ORC4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	49,728,812 - 49,815,599 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	49,728,344 - 49,815,604 (-)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	49,852,526 - 49,939,229 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	51,201,322 - 51,288,103 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	51,193,458 - 51,288,099 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	49,847,294 - 49,933,994 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	49,981,280 - 50,068,020 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	51,378,650 - 51,465,414 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Orc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	7	119,447,723 - 119,509,751 (-)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024405303	112,424,304 - 112,486,767 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	29,131,789 - 29,194,863 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	29,131,892 - 29,193,258 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ORC4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	4,096,647 - 4,171,398 (+)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	15	4,096,539 - 4,176,332 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	3,748,071 - 3,824,433 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ORC4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	10	35,231,782 - 35,319,830 (-)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666040	166,136,574 - 166,225,926 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	10	33,314,020 - 33,401,770 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	33,314,271 - 33,355,588 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Orc4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624866	626,556 - 716,725 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624866	622,859 - 716,787 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl	3	109,038,397 - 109,086,749 (+)	Ensembl

Orc4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	26,761,554 - 26,794,170 (-)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005390792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013517450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013517451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013517452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001235255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001235256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01036454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01036455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01036456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01175574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000004026 ⟹ ENSCLAP00000003947

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955440	13,932,495 - 14,006,806 (-)	Ensembl

RefSeq Acc Id:

XM_005390792 ⟹ XP_005390849

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955440	13,934,246 - 14,006,808 (-)	NCBI

Sequence:

show sequence

CAGAGGGGTCTGGAGGCGGGGCGGGGCCTGCGCTGGGCACGCCGGGAGCGCTTGCGGACCGCCG
GCAGCCGCAGGGGAGGCTGACCCGGACGCGGCGGCTGGGCTTGCGAGTAGGCTCCCGCTGCTGC
TGGCTCCCGCTCTGCCTGCCTCAGAACAGACTCCTCCTGCGAGAGGATTTGAATTTGTTGAAAT
GAGCAATCGTAAATCAAAGAACAACTTGCTACATGGAGAGTCCCTTTCTCAGGTACAAAGAATT
TTACGAGAAAGATTTTGTCACCAGAGTCCACATAATAACCTGTTTGGAGTGCAAGTACAATACA
AACACTTACTTGAACTGCTAAAAAGAACAGCTGTCCATGGAGAAAGTAACTCTGTGCTCATCGT
TGGACCCCGAGGATCTGGCAAGACCATGTTAATAAGCCATGCTTTAAAAGAGCTCATGGAAATA
GAAGAAGTGAGTGAAAATGTATTACAAGTTTATCTAAATGGACTGCTGCAGATCAATGATAAAA
TTGCTTTGAAAGAAATCACAAGGCAGTTACATCTGGAAAATGTAGTGGGAGATAAAGTTTTTGG
AAGTTTTGCTGAAAACTTTTCATTTCTTCTGGAAGCTTTAAAAAAAGGTGACCGGACTAGTAGT
TGCCCCGTGATCTTCATATTGGATGAATTTGATCTTTTTGCTCATCATAAAAACCAGACACTTC
TCTATAATCTTTTTGACATTTCTCAGTCCGCACAGACTCCAGTAGCAGTTGTTGGTCTTACATG
TAGATTGGATATCTTGGAACTCCTAGAAAAAAGAGTGAAGTCACGATTTTCTCACCGACAGATA
CACTTAATGAACTCATTTGGTTTTCCACAGTATGTTAAAATTTTTAAAGAACAATTATCTCTAC
CTGCAGAATTTCCAGATAAACTTTTTGCTGAAAAGTGGAATCAGACCATTCAGGGTCTCTCAGA
AGATAAAAGTGTACGAGAAATTCTCCTGAAGCATTTTAATGTCAGCAAAAACCTGAGGTCATTA
CACATGCTACTGATGCTCGCTTTAAATCGAGTGACTGCATCACACCCCTTGGTCACTGCCGCGG
ATCTGACGGAGGCAGCCCAGCTTTGCAGCATGGATTCTAAAGCAAACGTTGTGCACGGACTGTC
AGTCTTGGAAATTTGCCTCATAATAGCCATGAAACATTTAAATGACATCTACGAAGAGGAGCCC
TTTAACTTTCAGATGGTGTATAACGAGTTTCAGAAGTTTGTTCAAAGGAAAGCGCATTCTGTGT
ATGCCTTTGAGAAGCCTGTGGTCCTGAAGCAATCAAAAATGAGAAAAGACCAGAACACGTGGCT
GTGGGGGTCAGAGAAAGCAGTCAAGCAGGGAGCTTGCTGACGGGAGTGACAGTCTCGGTCCGTC
TTTAAAGTAGGAGCCTGGCTTTTGAACACCTACAACAGTTAGAATTAATAAAGCCCGTGGAAAG
AACTTCAGTAAATTCACAGAGGGAGTACCAGCTGATGAGA

hide sequence

RefSeq Acc Id:

XM_013517450 ⟹ XP_013372904

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955440	13,933,896 - 14,006,806 (-)	NCBI

Sequence:

show sequence

GAGGGGTCTGGAGGCGGGGCGGGGCCTGCGCTGGGCACGCCGGGAGCGCTTGCGGACCGCCGGC
AGCCGCAGGGGAGGCTGACCCGGACGCGGCGGCTGGGCTTGCGAGTAGGCTCCCGCTGCTGCTG
GCTCCCGCTCTGCCTGCCTCAGAACAGACTCCTCCTGCGAGAGGATTTGAATTTGTTGAAATGA
GCAATCGTAAATCAAAGAACAACTTGCTACATGGAGAGTCCCTTTCTCAGGTACAAAGAATTTT
ACGAGAAAGATTTTGTCACCAGAGTCCACATAATAACCTGTTTGGAGTGCAAGTACAATACAAA
CACTTACTTGAACTGCTAAAAAGAACAGCTGTCCATGGAGAAAGTAACTCTGTGCTCATCGTTG
GACCCCGAGGATCTGGCAAGACCATGTTAATAAGCCATGCTTTAAAAGAGCTCATGGAAATAGA
AGAAGTGAGTGAAAATGTATTACAAGTTTATCTAAATGGACTGCTGCAGATCAATGATAAAATT
GCTTTGAAAGAAATCACAAGGCAGTTACATCTGGAAAATGTAGTGGGAGATAAAGTTTTTGGAA
GTTTTGCTGAAAACTTTTCATTTCTTCTGGAAGCTTTAAAAAAAGGTGACCGGACTAGTAGTTG
CCCCGTGATCTTCATATTGGATGAATTTGATCTTTTTGCTCATCATAAAAACCAGACACTTCTC
TATAATCTTTTTGACATTTCTCAGTCCGCACAGACTCCAGTAGCAGTTGTTGGTCTTACATGTA
GATTGGATATCTTGGAACTCCTAGAAAAAAGAGTGAAGTCACGATTTTCTCACCGACAGATACA
CTTAATGAACTCATTTGGTTTTCCACAGTATGTTAAAATTTTTAAAGAACAATTATCTCTACCT
GCAGAATTTCCAGATAAACTTTTTGCTGAAAAGTGGAATCAGACCATTCAGGGTCTCTCAGAAG
ATAAAAGTGTACGAGAAATTCTCCTGAAGCATTTTAATGTCAGCAAAAACCTGAGGTCATTACA
CATGCTACTGATGCTCGCTTTAAATCGAGTGACTGCATCACACCCCTTGGTCACTGCCGCGGAT
CTGACGGAGGCAGCCCAGCTTTGCAGCATGGATTCTAAAGCAAACGTTGTGCACGGACTGTCAG
TCTTGGAAATTTGCCTCATAATAGCCATGAAACATTTAAATGACATCTACGAAGAGGAGCCCTT
TAACTTTCAGATGGTGTATAACGAGTTTCAGAAGTTTGTTCAAAGGAAAGCGCATTCTGTGTAT
GCCTTTGAGAAGCCTGTGGTCCTGAAGGCTTTTGAACACCTACAACAGTTAGAATTAATAAAGC
CCGTGGAAAGAACTTCAGTAAATTCACAGAGGGAGTACCAGCTGATGAGACTGCTCTTGGATAA
CACGCAGATCATGAATGCGCTGCAGAAGTACCCCAACTGCCCCACGGACGTTAGACAGTGGGCG
ACGTCCTCGCTGAGCTGGCTGTGAGCCCGCTTCACCGGTTTCAGACGTCGTTCACCGACAGCCT
GCAAGCTGTTGTCCTCTGCAAGACGTCACTGTATTATTCTGTGTCTGTGAACATTTACTGCACG
AGACGCTGCGGCACGTGTGTCTTGGCCGTGTCTCACCTGTGACTCACAGCAGCTGCGCGATTTA
TCATTCCAGTCCACTGTGCTGCAGGTAGCAGTTCAGAAGAATAAAATGCGAGTATTTTAGAGAT
TGAGCCATTTTTAAAA

hide sequence

RefSeq Acc Id:

XM_013517451 ⟹ XP_013372905

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955440	13,933,896 - 14,006,808 (-)	NCBI

Sequence:

show sequence

CAGAGGGGTCTGGAGGCGGGGCGGGGCCTGCGCTGGGCACGCCGGGAGCGCTTGCGGACCGCCG
GCAGCCGCAGGGGAGGCTGACCCGGACGCGGCGGCTGGGCTTGCGAGTAGGCTCCCGCTGCTGC
TGGCTCCCGCTCTGCCTGCCTCAGAACAGACTCCTCCTGCGAGAGGATTTGAATTTGTTGAAAT
GAGCAATCGTAAATCAAAGAACAACTTGCTACATGGAGAGTCCCTTTCTCAGGTACAAAGAATT
TTACGAGAAAGATTTTGTCACCAGAGTCCACATAATAACCTGTTTGGAGTGCAAGTACAATACA
AACACTTACTTGAACTGCTAAAAAGAACAGCTGTCCATGGAGAAAGTAACTCTGTGCTCATCGT
TGGACCCCGAGGATCTGGCAAGACCATGTTAATAAGCCATGCTTTAAAAGAGCTCATGGAAATA
GAAGAAGTGAGTGAAAATGTATTACAAGTTTATCTAAATGGACTGCTGCAGATCAATGATAAAA
TTGCTTTGAAAGAAATCACAAGGCAGTTACATCTGGAAAATGTAGTGGGAGATAAAGTTTTTGG
AAGTTTTGCTGAAAACTTTTCATTTCTTCTGGAAGCTTTAAAAAAAGGTGACCGGACTAGTAGT
TGCCCCGTGATCTTCATATTGGATGAATTTGATCTTTTTGCTCATCATAAAAACCAGACACTTC
TCTATAATCTTTTTGACATTTCTCAGTCCGCACAGACTCCAGTAGCAGTTGTTGGTCTTACATG
TAGATTGGGTCTCTCAGAAGATAAAAGTGTACGAGAAATTCTCCTGAAGCATTTTAATGTCAGC
AAAAACCTGAGGTCATTACACATGCTACTGATGCTCGCTTTAAATCGAGTGACTGCATCACACC
CCTTGGTCACTGCCGCGGATCTGACGGAGGCAGCCCAGCTTTGCAGCATGGATTCTAAAGCAAA
CGTTGTGCACGGACTGTCAGTCTTGGAAATTTGCCTCATAATAGCCATGAAACATTTAAATGAC
ATCTACGAAGAGGAGCCCTTTAACTTTCAGATGGTGTATAACGAGTTTCAGAAGTTTGTTCAAA
GGAAAGCGCATTCTGTGTATGCCTTTGAGAAGCCTGTGGTCCTGAAGGCTTTTGAACACCTACA
ACAGTTAGAATTAATAAAGCCCGTGGAAAGAACTTCAGTAAATTCACAGAGGGAGTACCAGCTG
ATGAGACTGCTCTTGGATAACACGCAGATCATGAATGCGCTGCAGAAGTACCCCAACTGCCCCA
CGGACGTTAGACAGTGGGCGACGTCCTCGCTGAGCTGGCTGTGAGCCCGCTTCACCGGTTTCAG
ACGTCGTTCACCGACAGCCTGCAAGCTGTTGTCCTCTGCAAGACGTCACTGTATTATTCTGTGT
CTGTGAACATTTACTGCACGAGACGCTGCGGCACGTGTGTCTTGGCCGTGTCTCACCTGTGACT
CACAGCAGCTGCGCGATTTATCATTCCAGTCCACTGTGCTGCAGGTAGCAGTTCAGAAGAATAA
AATGCGAGTATTTTAGAGATTGAGCCATTTTTAAAA

hide sequence

RefSeq Acc Id:

XM_013517452 ⟹ XP_013372906

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955440	13,933,896 - 13,961,127 (-)	NCBI

Sequence:

show sequence

ACTTGAACTGCTAAAAAGAACAGCTGTCCATGGAGAAAGTAACTCTGTGCTCATCGTTGGACCC
CGAGGATCTGGCAAGACCATGGGACTTTTCATCTTTTCCCTAATTTAAATATTCTACAAACTTT
GTATTTATTTAGTTAATAAGCCATGCTTTAAAAGAGCTCATGGAAATAGAAGAAGTGAGTGAAA
ATGTATTACAAGTTTATCTAAATGGACTGCTGCAGATCAATGATAAAATTGCTTTGAAAGAAAT
CACAAGGCAGTTACATCTGGAAAATGTAGTGGGAGATAAAGTTTTTGGAAGTTTTGCTGAAAAC
TTTTCATTTCTTCTGGAAGCTTTAAAAAAAGGTGACCGGACTAGTAGTTGCCCCGTGATCTTCA
TATTGGATGAATTTGATCTTTTTGCTCATCATAAAAACCAGACACTTCTCTATAATCTTTTTGA
CATTTCTCAGTCCGCACAGACTCCAGTAGCAGTTGTTGGTCTTACATGTAGATTGGATATCTTG
GAACTCCTAGAAAAAAGAGTGAAGTCACGATTTTCTCACCGACAGATACACTTAATGAACTCAT
TTGGTTTTCCACAGTATGTTAAAATTTTTAAAGAACAATTATCTCTACCTGCAGAATTTCCAGA
TAAACTTTTTGCTGAAAAGTGGAATCAGACCATTCAGGGTCTCTCAGAAGATAAAAGTGTACGA
GAAATTCTCCTGAAGCATTTTAATGTCAGCAAAAACCTGAGGTCATTACACATGCTACTGATGC
TCGCTTTAAATCGAGTGACTGCATCACACCCCTTGGTCACTGCCGCGGATCTGACGGAGGCAGC
CCAGCTTTGCAGCATGGATTCTAAAGCAAACGTTGTGCACGGACTGTCAGTCTTGGAAATTTGC
CTCATAATAGCCATGAAACATTTAAATGACATCTACGAAGAGGAGCCCTTTAACTTTCAGATGG
TGTATAACGAGTTTCAGAAGTTTGTTCAAAGGAAAGCGCATTCTGTGTATGCCTTTGAGAAGCC
TGTGGTCCTGAAGGCTTTTGAACACCTACAACAGTTAGAATTAATAAAGCCCGTGGAAAGAACT
TCAGTAAATTCACAGAGGGAGTACCAGCTGATGAGACTGCTCTTGGATAACACGCAGATCATGA
ATGCGCTGCAGAAGTACCCCAACTGCCCCACGGACGTTAGACAGTGGGCGACGTCCTCGCTGAG
CTGGCTGTGAGCCCGCTTCACCGGTTTCAGACGTCGTTCACCGACAGCCTGCAAGCTGTTGTCC
TCTGCAAGACGTCACTGTATTATTCTGTGTCTGTGAACATTTACTGCACGAGACGCTGCGGCAC
GTGTGTCTTGGCCGTGTCTCACCTGTGACTCACAGCAGCTGCGCGATTTATCATTCCAGTCCAC
TGTGCTGCAGGTAGCAGTTCAGAAGAATAAAATGCGAGTATTTTAGAGATTGAGCCATTTTTAA
AA

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RefSeq Acc Id:

XR_001235255

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955440	13,934,244 - 14,006,808 (-)	NCBI

Sequence:

show sequence

CAGAGGGGTCTGGAGGCGGGGCGGGGCCTGCGCTGGGCACGCCGGGAGCGCTTGCGGACCGCCG
GCAGCCGCAGGGGAGGCTGACCCGGACGCGGCGGCTGGGCTTGCGAGTAGGCTCCCGCTGCTGC
TGGCTCCCGCTCTGCCTGCCTCAGAACAGACTCCTCCTGCGAGAGGATTTGAATTTGTTGAAAT
GAGCAATCGTAAATCAAAGAACAACTTGCTACATGGAGAGTCCCTTTCTCAGGTACAAAGAATT
TTACGAGAAAGATTTTGTCACCAGAGTCCACATAATAACCTGTTTGGAGTGCAAGTACAATACA
AACACTTACTTGAACTGCTAAAAAGAACAGCTGTCCATGGAGAAAGTAACTCTGTGCTCATCGT
TGGACCCCGAGGATCTGGCAAGACCATGTTAATAAGCCATGCTTTAAAAGAGCTCATGGAAATA
GAAGAAGTGAGTGAAAATGTATTACAAGTTTATCTAAATGGACTGCTGCAGATCAATGATAAAA
TTGCTTTGAAAGAAATCACAAGGCAGTTACATCTGGAAAATGTAGTGGGAGATAAAGTTTTTGG
AAGTTTTGCTGAAAACTTTTCATTTCTTCTGGAAGCTTTAAAAAAAGGTGACCGGACTAGTAGT
TGCCCCGTGATCTTCATATTGGATGAATTTGATCTTTTTGCTCATCATAAAAACCAGACACTTC
TCTATAATCTTTTTGACATTTCTCAGTCCGCACAGACTCCAGTAGCAGTTGTTGGTCTTACATG
TAGATTGGATATCTTGGAACTCCTAGAAAAAAGAGTGAAGTCACGATTTTCTCACCGACAGATA
CACTTAATGAACTCATTTGGTTTTCCACAGTATGTTAAAATTTTTAAAGAACAATTATCTCTAC
CTGCAGAATTTCCAGATAAACTTTTTGCTGAAAAGTGGAATCAGACCATTCAGGGTCTCTCAGA
AGATAAAAGTGTACGAGAAATTCTCCTGAAGCATTTTAATGTCAGCAAAAACCTGAGGTCATTA
CACATGCTACTGATGCTCGCTTTAAATCGAGTGACTGCATCACACCCCTTGGTCACTGCCGCGG
ATCTGACGGAGGCAGCCCAGCTTTGCAGCATGGATTCTAAAGCAAACGTTGTGCACGGACTGTC
AGTCTTGGAAATTTGCCTCATAATAGCCATGAAACATTTAAATGACATCTACGAAGAGGAGCCC
TTTAACTTTCAGATGGTGTATAACGAGTTTCAGAAGTTTGTTCAAAGGAAAGCGCATTCTGTGT
ATGCCTTTGAGAAGCCTGTGGTCCTGAAGACCAAAAATATCCAAAAATAAAATGTTCCATTAGT
TCTGAAGAAAGCAGCAAGTTTTTGTGGTTTCTGGGGGTTACAGTGCCCTCTGCTGTCTGTGCTT
AGCACTTGCACCCTGCGAAGCGCTCCTGCTGTATTCATTGCAGCCTAATACTGCAAGGGACATA
ACCACCTTGCCTCTTTCCGACCCAGGAATTGGGTTTATGATCTCCGCGGCTTTTGAACACCTAC
AACAGTTAGAATTAATAAAGCCCGTGGAAAGAACTTCAGTAAATTCACAGAGGGAGTACCAGCT
GATGAGACT

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RefSeq Acc Id:

XR_001235256

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955440	13,934,976 - 14,006,808 (-)	NCBI

Sequence:

show sequence

CAGAGGGGTCTGGAGGCGGGGCGGGGCCTGCGCTGGGCACGCCGGGAGCGCTTGCGGACCGCCG
GCAGCCGCAGGGGAGGCTGACCCGGACGCGGCGGCTGGGCTTGCGAGTAGGCTCCCGCTGCTGC
TGGCTCCCGCTCTGCCTGCCTCAGAACAGACTCCTCCTGCGAGAGGATTTGAATTTGTTGAAAT
GAGCAATCGTAAATCAAAGAACAACTTGCTACATGGAGAGTCCCTTTCTCAGGTACAAAGAATT
TTACGAGAAAGATTTTGTCACCAGAGTCCACATAATAACCTGTTTGGAGTGCAAGTACAATACA
AACACTTACTTGAACTGCTAAAAAGAACAGCTGTCCATGGAGAAAGTAACTCTGTGCTCATCGT
TGGACCCCGAGGATCTGGCAAGACCATGTTAATAAGCCATGCTTTAAAAGAGCTCATGGAAATA
GAAGAAGTGAGTGAAAATGTATTACAAGTTTATCTAAATGGACTGCTGCAGATCAATGATAAAA
TTGCTTTGAAAGAAATCACAAGGCAGTTACATCTGGAAAATGTAGTGGGAGATAAAGTTTTTGG
AAGTTTTGCTGAAAACTTTTCATTTCTTCTGGAAGCTTTAAAAAAAGGTGACCGGACTAGTAGT
TGCCCCGTGATCTTCATATTGGATGAATTTGATCTTTTTGCTCATCATAAAAACCAGACACTTC
TCTATAATCTTTTTGACATTTCTCAGTCCGCACAGACTCCAGTAGCAGTTGTTGGTCTTACATG
TAGATTGGATATCTTGGAACTCCTAGAAAAAAGAGTGAAGTCACGATTTTCTCACCGACAGATA
CACTTAATGAACTCATTTGGTTTTCCACAGTATGTTAAAATTTTTAAAGAACAATTATCTCTAC
CTGCAGAATTTCCAGATAAACTTTTTGCTGAAAAGTGGAATCAGACCATTCAGGGTCTCTCAGA
AGATAAAAGTGTACGAGAAATTCTCCTGAAGCATTTTAATGTCAGCAAAAACCTGAGGTCATTA
CACATGCTACTGATGCTCGCTTTAAATCGAGTGACTGCATCACACCCCTTGGTCACTGCCGCGG
ATCTGACGGAGGCAGCCCAGCTTTGCAGCATGGATTCTAAAGCAAACGTTGTGCACGGACTGTC
AGTCTTGGAAATTTGCCTCATAATAGCCATGAAACATTTAAATGACATCTACGAAGAGGAGCCC
TTTAACTTTCAGATGGTGTATAACGAGTTTCAGAAGTTTGTTCAAAGGAAAGCGCATTCTGTGT
ATGCCTTTGAGAAGCCTGTGGTCCTGAAGACCAAAAATATCCAAAAATAAAATGTTCCATTAGT
TCTGAAGAAAGCAGCAAGTTTTTGTGGTTTCTGGGGGTTACAGTGCCCTCTGCTGTCTGTGCTT
AGCACTTGCACCCTGCGAAGCGCTCCTGCTGTATTCATTGCAGCCTAATACTGCAAGGGACATA
ACCACCTTGCCTCTTTCCGACCCAGGAATTGGGTTTATGATCTCCGCGCAATCAAAAATGAGAA
AAGA

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Protein Sequences


Protein RefSeqs	XP_005390849	(Get FASTA)	NCBI Sequence Viewer
	XP_013372904	(Get FASTA)	NCBI Sequence Viewer
	XP_013372905	(Get FASTA)	NCBI Sequence Viewer
	XP_013372906	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000003947
	ENSCLAP00000003947.1

RefSeq Acc Id:

XP_005390849 ⟸ XM_005390792

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSNRKSKNNLLHGESLSQVQRILRERFCHQSPHNNLFGVQVQYKHLLELLKRTAVHGESNSVLI
VGPRGSGKTMLISHALKELMEIEEVSENVLQVYLNGLLQINDKIALKEITRQLHLENVVGDKVF
GSFAENFSFLLEALKKGDRTSSCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPVAVVGLT
CRLDILELLEKRVKSRFSHRQIHLMNSFGFPQYVKIFKEQLSLPAEFPDKLFAEKWNQTIQGLS
EDKSVREILLKHFNVSKNLRSLHMLLMLALNRVTASHPLVTAADLTEAAQLCSMDSKANVVHGL
SVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFVQRKAHSVYAFEKPVVLKQSKMRKDQNTW
LWGSEKAVKQGAC

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RefSeq Acc Id:

XP_013372905 ⟸ XM_013517451

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSNRKSKNNLLHGESLSQVQRILRERFCHQSPHNNLFGVQVQYKHLLELLKRTAVHGESNSVLI
VGPRGSGKTMLISHALKELMEIEEVSENVLQVYLNGLLQINDKIALKEITRQLHLENVVGDKVF
GSFAENFSFLLEALKKGDRTSSCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPVAVVGLT
CRLGLSEDKSVREILLKHFNVSKNLRSLHMLLMLALNRVTASHPLVTAADLTEAAQLCSMDSKA
NVVHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFVQRKAHSVYAFEKPVVLKAFEHL
QQLELIKPVERTSVNSQREYQLMRLLLDNTQIMNALQKYPNCPTDVRQWATSSLSWL

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RefSeq Acc Id:	XP_013372904 ⟸ XM_013517450
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YJU8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSNRKSKNNLLHGESLSQVQRILRERFCHQSPHNNLFGVQVQYKHLLELLKRTAVHGESNSVLI VGPRGSGKTMLISHALKELMEIEEVSENVLQVYLNGLLQINDKIALKEITRQLHLENVVGDKVF GSFAENFSFLLEALKKGDRTSSCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPVAVVGLT CRLDILELLEKRVKSRFSHRQIHLMNSFGFPQYVKIFKEQLSLPAEFPDKLFAEKWNQTIQGLS EDKSVREILLKHFNVSKNLRSLHMLLMLALNRVTASHPLVTAADLTEAAQLCSMDSKANVVHGL SVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFVQRKAHSVYAFEKPVVLKAFEHLQQLELI KPVERTSVNSQREYQLMRLLLDNTQIMNALQKYPNCPTDVRQWATSSLSWL hide sequence

RefSeq Acc Id:

XP_013372906 ⟸ XM_013517452

- Peptide Label:

isoform X4

- Sequence:

show sequence

MEIEEVSENVLQVYLNGLLQINDKIALKEITRQLHLENVVGDKVFGSFAENFSFLLEALKKGDR
TSSCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPVAVVGLTCRLDILELLEKRVKSRFSH
RQIHLMNSFGFPQYVKIFKEQLSLPAEFPDKLFAEKWNQTIQGLSEDKSVREILLKHFNVSKNL
RSLHMLLMLALNRVTASHPLVTAADLTEAAQLCSMDSKANVVHGLSVLEICLIIAMKHLNDIYE
EEPFNFQMVYNEFQKFVQRKAHSVYAFEKPVVLKAFEHLQQLELIKPVERTSVNSQREYQLMRL
LLDNTQIMNALQKYPNCPTDVRQWATSSLSWL

hide sequence

Ensembl Acc Id:

ENSCLAP00000003947 ⟸ ENSCLAT00000004026

Protein Domains

AAA+ ATPase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000002811	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000004026	ENTREZGENE
	ENSCLAT00000004026.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	AAA+_ATPase	UniProtKB/TrEMBL
	AAA_16	UniProtKB/TrEMBL
	ORC4	UniProtKB/TrEMBL
	ORC4_C	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
NCBI Gene	Orc4	ENTREZGENE
PANTHER	ORIGIN RECOGNITION COMPLEX SUBUNIT 4	UniProtKB/TrEMBL
	PTHR12087	UniProtKB/TrEMBL
Pfam	AAA_16	UniProtKB/TrEMBL
	ORC4_C	UniProtKB/TrEMBL
PIRSF	ORC4	UniProtKB/TrEMBL
SMART	AAA	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8C2YJU8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Orc4	origin recognition complex subunit 4		origin recognition complex, subunit 4	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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