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Gene: Fbxo6 (F-box protein 6) Chinchilla lanigera

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Symbol:

Fbxo6

Name:

F-box protein 6

RGD ID:

8850681

Description:

ENCODES a protein that exhibits carbohydrate binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN ERAD pathway (ortholog); glycoprotein catabolic process (ortholog); SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog); Familial Atrial Fibrillation 6 (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum quality control compartment (ortholog); SCF ubiquitin ligase complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

F-box only protein 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBXO6 (F-box protein 6)	NCBI	Ortholog
Mus musculus (house mouse):	Fbxo6 (F-box protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Fbxo6 (F-box protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBXO6 (F-box protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fbxo6 (F-box protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBXO6 (F-box protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FBXO6 (F-box protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fbxo6 (F-box protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	2,197,467 - 2,201,256 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955486	2,197,296 - 2,205,947 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease type 2 (ISO)

chromosome 1p36 deletion syndrome (ISO)

Familial Atrial Fibrillation 6 (ISO)

Stevens-Johnson syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ERAD pathway (ISO)

glycoprotein catabolic process (ISO)

SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (ISO)

ubiquitin-dependent protein catabolic process (ISO)

Cellular Component

cytoplasm (ISO)

endoplasmic reticulum quality control compartment (ISO)

SCF ubiquitin ligase complex (ISO)

Molecular Function

carbohydrate binding (ISO)

protein binding (ISO)

ubiquitin protein ligase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Fbxo6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	2,197,467 - 2,201,256 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955486	2,197,296 - 2,205,947 (-)	NCBI	ChiLan1.0	ChiLan1.0

FBXO6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	11,664,200 - 11,674,354 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	11,664,200 - 11,674,354 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	11,724,257 - 11,734,411 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	11,646,768 - 11,656,998 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	11,658,446 - 11,668,673	NCBI
Celera	1	10,836,207 - 10,846,475 (+)	NCBI		Celera
Cytogenetic Map	1	p36.22	NCBI
HuRef	1	10,878,308 - 10,888,516 (+)	NCBI		HuRef
CHM1_1	1	11,712,136 - 11,722,413 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	11,208,255 - 11,218,422 (+)	NCBI		T2T-CHM13v2.0

Fbxo6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	148,230,173 - 148,236,592 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	148,230,173 - 148,236,597 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	148,145,716 - 148,152,135 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	148,145,716 - 148,152,140 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	147,519,825 - 147,526,244 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	146,989,587 - 146,995,624 (-)	NCBI		MGSCv36	mm8
Celera	4	150,407,047 - 150,413,479 (-)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	78.67	NCBI

Fbxo6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	163,859,909 - 163,865,693 (-)	NCBI		GRCr8
mRatBN7.2	5	158,576,729 - 158,582,520 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	158,576,759 - 158,582,525 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	161,293,652 - 161,297,063 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	163,115,443 - 163,118,858 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	163,071,790 - 163,075,208 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	164,956,285 - 164,962,075 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	164,956,280 - 164,959,851 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	168,614,323 - 168,620,072 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	165,223,009 - 165,226,420 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	165,233,196 - 165,236,608 (-)	NCBI
Celera	5	156,856,162 - 156,859,573 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

FBXO6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	84,549,519 - 84,554,176 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	84,549,560 - 84,580,756 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	81,081,851 - 81,088,009 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	85,212,668 - 85,218,810 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	85,212,675 - 85,218,790 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	81,961,418 - 81,967,576 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	82,962,035 - 82,968,196 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	84,024,909 - 84,031,072 (-)	NCBI		UU_Cfam_GSD_1.0

Fbxo6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	34,707,679 - 34,713,814 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	533,254 - 542,907 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	531,873 - 538,596 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBXO6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	71,768,498 - 71,774,243 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	71,755,335 - 71,774,264 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	65,674,308 - 65,693,217 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FBXO6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	120,116,125 - 120,127,025 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	120,116,169 - 120,126,920 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	23,984,628 - 23,995,338 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fbxo6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	1,286,820 - 1,292,755 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	1,286,819 - 1,292,565 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005403997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005403998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005403999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013504313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013504314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01058994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01168354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000006516 ⟹ ENSCLAP00000006410

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955486	2,197,467 - 2,201,256 (-)	Ensembl

RefSeq Acc Id:

XM_005403997 ⟹ XP_005404054

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955486	2,197,296 - 2,203,835 (-)	NCBI

Sequence:

show sequence

CGCGGAAGGACCGGCGGGGCGGGGCGAGAGGGCACGACGACGTCGCAGCCGCCCGAGCACCGGG
CACTGGAGCTGTGGCTGGGGCGCTCGCCAGTCCCTGTGCCCCGGTCTCGGCCCAGCAGGAACCG
GCAGGGCAGGGCGCGCACAGAGCTGCGGACGCCGTCCCCGGGCGCATCCCCTGGCGGTCCCGCG
GCTCGCAGGGCCTTGTCGCCCGGCCTGTGCGCCCCGCCCCACTATGGCCCTGGTCAGCATCAAC
AAGCTACCGGAGAACATCCTGCTGGAGCTCTTCACGCACGTACCTGCCCGCCACCTGCTACTGC
GATGTCGCCCGGTCTGCAGCCTCTGGCGGGACCTCATCGACCTGGTGACGCTCTGGAAGCGCAA
GTGCCTGCGGGAGGGCTTCATCCCCAAGGACTGGGACCAGCCTGTGGCCGACTGGAAGGTCTTC
TACTTCCTGTGCAGCCTGCGCAGGAACCTCCTGCACAACCCCTGTGCTGAAGAGGACATGGAAT
CGTGGACACTTGATGCTAATGAGGGGGACCACTGGAAGGTGGAGAGCATCCCTGGAGCACATGG
TACAAACTTTCCTGACCCCAACGTCAAGAAGTACTTTGTCACATCCTATGGCCTGTGCCTCAAG
TCCCAGCTGGTGGACCTCAAGGCCAAGGGCTACTGGGAAGAGCTGCTGGACACGTTTCGGCCTG
ACATCGTGGTGAAGGACTGGTTCGCGGCCAGAAGAGACTGCGGCTGCACCTACCAGATCCGAGT
CCAGCTGGTCTCGGCCGACTACATCATTCTGGCCTCCTTCGAGCCCCCGCCTGTGACCATCGAG
CAGTGGAACGATGCCACGTGGACAGAGGTCTCCCACACCTTCTCGGACTACCCTCCAGGCGTGC
GCCACATCCTCTTCCAGCACGGGGGCCAGGACACCCAGTACTGGGCAGGCTGGTACGGGCCCCG
GGTCACCAACAGCAGCATAGTTATTAGCAACAAGATGACCAGGAAGCTGGCCCCGTCCACCCCT
CAGTCTGACAACGTAGGGGCGGAGGAAGCTGCCCAGTCACCCACCCACTTGTCTTCACCGACCT
GAGGAGAGTAACCTGGCCACCATGCATCCGTCCGCTATCCAGCCCAGCCAGAGGTCCCTCCTGG
CAAGAGCTGGGCCAGCAGCAGGCAGTGACTTCCCAGCAGACGCTGAGAATGTATGGTCACCCTG
GCTCTGGCATTTTGTCATAATAAATGTTAAATGTTTTCTGTGAAA

hide sequence

RefSeq Acc Id:

XM_005403998 ⟹ XP_005404055

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955486	2,197,296 - 2,203,076 (-)	NCBI

Sequence:

show sequence

ATGTGCGCCACCACACCCGGCAAGGCCTGTGCGCCCCGCCCCACTATGGCCCTGGTCAGCATCA
ACAAGCTACCGGAGAACATCCTGCTGGAGCTCTTCACGCACGTACCTGCCCGCCACCTGCTACT
GCGATGTCGCCCGGTCTGCAGCCTCTGGCGGGACCTCATCGACCTGGTGACGCTCTGGAAGCGC
AAGTGCCTGCGGGAGGGCTTCATCCCCAAGGACTGGGACCAGCCTGTGGCCGACTGGAAGGTCT
TCTACTTCCTGTGCAGCCTGCGCAGGAACCTCCTGCACAACCCCTGTGCTGAAGAGGACATGGA
ATCGTGGACACTTGATGCTAATGAGGGGGACCACTGGAAGGTGGAGAGCATCCCTGGAGCACAT
GGTACAAACTTTCCTGACCCCAACGTCAAGAAGTACTTTGTCACATCCTATGGCCTGTGCCTCA
AGTCCCAGCTGGTGGACCTCAAGGCCAAGGGCTACTGGGAAGAGCTGCTGGACACGTTTCGGCC
TGACATCGTGGTGAAGGACTGGTTCGCGGCCAGAAGAGACTGCGGCTGCACCTACCAGATCCGA
GTCCAGCTGGTCTCGGCCGACTACATCATTCTGGCCTCCTTCGAGCCCCCGCCTGTGACCATCG
AGCAGTGGAACGATGCCACGTGGACAGAGGTCTCCCACACCTTCTCGGACTACCCTCCAGGCGT
GCGCCACATCCTCTTCCAGCACGGGGGCCAGGACACCCAGTACTGGGCAGGCTGGTACGGGCCC
CGGGTCACCAACAGCAGCATAGTTATTAGCAACAAGATGACCAGGAAGCTGGCCCCGTCCACCC
CTCAGTCTGACAACGTAGGGGCGGAGGAAGCTGCCCAGTCACCCACCCACTTGTCTTCACCGAC
CTGAGGAGAGTAACCTGGCCACCATGCATCCGTCCGCTATCCAGCCCAGCCAGAGGTCCCTCCT
GGCAAGAGCTGGGCCAGCAGCAGGCAGTGACTTCCCAGCAGACGCTGAGAATGTATGGTCACCC
TGGCTCTGGCATTTTGTCATAATAAATGTTAAATGTTTTCTGTGAAA

hide sequence

RefSeq Acc Id:

XM_005403999 ⟹ XP_005404056

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955486	2,197,296 - 2,204,031 (-)	NCBI

Sequence:

show sequence

TTTTTAGCAGCTCTTTGGTCGCCTGGGGCTCTTAGAGAGGGGTCTGTGGGTGGTTCCAGAGCCG
GGACGGCCCACCTTCGGCTGCGTGGGAGAGCAGATAAAAGGAGCACCGAGGCCAGGCTTGCTGG
CTGGAGGAGGAGGCGGGAAGAGGCCTGTGCGCCCCGCCCCACTATGGCCCTGGTCAGCATCAAC
AAGCTACCGGAGAACATCCTGCTGGAGCTCTTCACGCACGTACCTGCCCGCCACCTGCTACTGC
GATGTCGCCCGGTCTGCAGCCTCTGGCGGGACCTCATCGACCTGGTGACGCTCTGGAAGCGCAA
GTGCCTGCGGGAGGGCTTCATCCCCAAGGACTGGGACCAGCCTGTGGCCGACTGGAAGGTCTTC
TACTTCCTGTGCAGCCTGCGCAGGAACCTCCTGCACAACCCCTGTGCTGAAGAGGACATGGAAT
CGTGGACACTTGATGCTAATGAGGGGGACCACTGGAAGGTGGAGAGCATCCCTGGAGCACATGG
TACAAACTTTCCTGACCCCAACGTCAAGAAGTACTTTGTCACATCCTATGGCCTGTGCCTCAAG
TCCCAGCTGGTGGACCTCAAGGCCAAGGGCTACTGGGAAGAGCTGCTGGACACGTTTCGGCCTG
ACATCGTGGTGAAGGACTGGTTCGCGGCCAGAAGAGACTGCGGCTGCACCTACCAGATCCGAGT
CCAGCTGGTCTCGGCCGACTACATCATTCTGGCCTCCTTCGAGCCCCCGCCTGTGACCATCGAG
CAGTGGAACGATGCCACGTGGACAGAGGTCTCCCACACCTTCTCGGACTACCCTCCAGGCGTGC
GCCACATCCTCTTCCAGCACGGGGGCCAGGACACCCAGTACTGGGCAGGCTGGTACGGGCCCCG
GGTCACCAACAGCAGCATAGTTATTAGCAACAAGATGACCAGGAAGCTGGCCCCGTCCACCCCT
CAGTCTGACAACGTAGGGGCGGAGGAAGCTGCCCAGTCACCCACCCACTTGTCTTCACCGACCT
GAGGAGAGTAACCTGGCCACCATGCATCCGTCCGCTATCCAGCCCAGCCAGAGGTCCCTCCTGG
CAAGAGCTGGGCCAGCAGCAGGCAGTGACTTCCCAGCAGACGCTGAGAATGTATGGTCACCCTG
GCTCTGGCATTTTGTCATAATAAATGTTAAATGTTTTCTGTGAAA

hide sequence

RefSeq Acc Id:

XM_013504313 ⟹ XP_013359767

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955486	2,197,296 - 2,205,947 (-)	NCBI

Sequence:

show sequence

CCAAGGGTCACCAACAGCAGCATCACCATCGGGCCGGCGCTGCCCTGACGCCCCCTGGACCCCC
AGCCACAGAACACGAGCGGGCCTGTGCGCCCCGCCCCACTATGGCCCTGGTCAGCATCAACAAG
CTACCGGAGAACATCCTGCTGGAGCTCTTCACGCACGTACCTGCCCGCCACCTGCTACTGCGAT
GTCGCCCGGTCTGCAGCCTCTGGCGGGACCTCATCGACCTGGTGACGCTCTGGAAGCGCAAGTG
CCTGCGGGAGGGCTTCATCCCCAAGGACTGGGACCAGCCTGTGGCCGACTGGAAGGTCTTCTAC
TTCCTGTGCAGCCTGCGCAGGAACCTCCTGCACAACCCCTGTGCTGAAGAGGACATGGAATCGT
GGACACTTGATGCTAATGAGGGGGACCACTGGAAGGTGGAGAGCATCCCTGGAGCACATGGTAC
AAACTTTCCTGACCCCAACGTCAAGAAGTACTTTGTCACATCCTATGGCCTGTGCCTCAAGTCC
CAGCTGGTGGACCTCAAGGCCAAGGGCTACTGGGAAGAGCTGCTGGACACGTTTCGGCCTGACA
TCGTGGTGAAGGACTGGTTCGCGGCCAGAAGAGACTGCGGCTGCACCTACCAGATCCGAGTCCA
GCTGGTCTCGGCCGACTACATCATTCTGGCCTCCTTCGAGCCCCCGCCTGTGACCATCGAGCAG
TGGAACGATGCCACGTGGACAGAGGTCTCCCACACCTTCTCGGACTACCCTCCAGGCGTGCGCC
ACATCCTCTTCCAGCACGGGGGCCAGGACACCCAGTACTGGGCAGGCTGGTACGGGCCCCGGGT
CACCAACAGCAGCATAGTTATTAGCAACAAGATGACCAGGAAGCTGGCCCCGTCCACCCCTCAG
TCTGACAACGTAGGGGCGGAGGAAGCTGCCCAGTCACCCACCCACTTGTCTTCACCGACCTGAG
GAGAGTAACCTGGCCACCATGCATCCGTCCGCTATCCAGCCCAGCCAGAGGTCCCTCCTGGCAA
GAGCTGGGCCAGCAGCAGGCAGTGACTTCCCAGCAGACGCTGAGAATGTATGGTCACCCTGGCT
CTGGCATTTTGTCATAATAAATGTTAAATGTTTTCTGTGAAA

hide sequence

RefSeq Acc Id:

XM_013504314 ⟹ XP_013359768

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955486	2,197,296 - 2,203,076 (-)	NCBI

Sequence:

show sequence

ATGTGCGCCACCACACCCGGCAAGGCCTGTGCGCCCCGCCCCACTATGGCCCTGGTCAGCATCA
ACAAGCTACCGGAGAACATCCTGCTGGAGCTCTTCACGCACGTACCTGCCCGCCACCTGCTACT
GCGATGTCGCCCGGTCTGCAGCCTCTGGCGGGACCTCATCGACCTGGTGACGCTCTGGAAGCGC
AAGTGCCTGCGGGAGGGCTTCATCCCCAAGGACTGGGACCAGCCTGTGGCCGACTGGAAGGTCT
TCTACTTCCTGTGCAGCCTGCGCAGGAACCTCCTGCACAACCCCTGTGCTGAAGAGGACATGGA
ATCGTGGACACTTGATGCTAATGAGGGGGACCACTGGAAGGTGGAGAGCATCCCTGGAGCACAT
GGTACAAACTTTCCTGACCCCAACGTCAAGAAGTACTTTGTCACATCCTATGGGTTCGCGGCCA
GAAGAGACTGCGGCTGCACCTACCAGATCCGAGTCCAGCTGGTCTCGGCCGACTACATCATTCT
GGCCTCCTTCGAGCCCCCGCCTGTGACCATCGAGCAGTGGAACGATGCCACGTGGACAGAGGTC
TCCCACACCTTCTCGGACTACCCTCCAGGCGTGCGCCACATCCTCTTCCAGCACGGGGGCCAGG
ACACCCAGTACTGGGCAGGCTGGTACGGGCCCCGGGTCACCAACAGCAGCATAGTTATTAGCAA
CAAGATGACCAGGAAGCTGGCCCCGTCCACCCCTCAGTCTGACAACGTAGGGGCGGAGGAAGCT
GCCCAGTCACCCACCCACTTGTCTTCACCGACCTGAGGAGAGTAACCTGGCCACCATGCATCCG
TCCGCTATCCAGCCCAGCCAGAGGTCCCTCCTGGCAAGAGCTGGGCCAGCAGCAGGCAGTGACT
TCCCAGCAGACGCTGAGAATGTATGGTCACCCTGGCTCTGGCATTTTGTCATAATAAATGTTAA
ATGTTTTCTGTGAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005404054	(Get FASTA)	NCBI Sequence Viewer
	XP_005404055	(Get FASTA)	NCBI Sequence Viewer
	XP_005404056	(Get FASTA)	NCBI Sequence Viewer
	XP_013359767	(Get FASTA)	NCBI Sequence Viewer
	XP_013359768	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000006410
	ENSCLAP00000006410.1

RefSeq Acc Id:	XP_005404056 ⟸ XM_005403999
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2UWE3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALVSINKLPENILLELFTHVPARHLLLRCRPVCSLWRDLIDLVTLWKRKCLREGFIPKDWDQP VADWKVFYFLCSLRRNLLHNPCAEEDMESWTLDANEGDHWKVESIPGAHGTNFPDPNVKKYFVT SYGLCLKSQLVDLKAKGYWEELLDTFRPDIVVKDWFAARRDCGCTYQIRVQLVSADYIILASFE PPPVTIEQWNDATWTEVSHTFSDYPPGVRHILFQHGGQDTQYWAGWYGPRVTNSSIVISNKMTR KLAPSTPQSDNVGAEEAAQSPTHLSSPT hide sequence

RefSeq Acc Id:	XP_005404054 ⟸ XM_005403997
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2UWE3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALVSINKLPENILLELFTHVPARHLLLRCRPVCSLWRDLIDLVTLWKRKCLREGFIPKDWDQP VADWKVFYFLCSLRRNLLHNPCAEEDMESWTLDANEGDHWKVESIPGAHGTNFPDPNVKKYFVT SYGLCLKSQLVDLKAKGYWEELLDTFRPDIVVKDWFAARRDCGCTYQIRVQLVSADYIILASFE PPPVTIEQWNDATWTEVSHTFSDYPPGVRHILFQHGGQDTQYWAGWYGPRVTNSSIVISNKMTR KLAPSTPQSDNVGAEEAAQSPTHLSSPT hide sequence

RefSeq Acc Id:

XP_005404055 ⟸ XM_005403998

- Peptide Label:

isoform X1

- Sequence:

show sequence

MCATTPGKACAPRPTMALVSINKLPENILLELFTHVPARHLLLRCRPVCSLWRDLIDLVTLWKR
KCLREGFIPKDWDQPVADWKVFYFLCSLRRNLLHNPCAEEDMESWTLDANEGDHWKVESIPGAH
GTNFPDPNVKKYFVTSYGLCLKSQLVDLKAKGYWEELLDTFRPDIVVKDWFAARRDCGCTYQIR
VQLVSADYIILASFEPPPVTIEQWNDATWTEVSHTFSDYPPGVRHILFQHGGQDTQYWAGWYGP
RVTNSSIVISNKMTRKLAPSTPQSDNVGAEEAAQSPTHLSSPT

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RefSeq Acc Id:	XP_013359767 ⟸ XM_013504313
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2UWE3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALVSINKLPENILLELFTHVPARHLLLRCRPVCSLWRDLIDLVTLWKRKCLREGFIPKDWDQP VADWKVFYFLCSLRRNLLHNPCAEEDMESWTLDANEGDHWKVESIPGAHGTNFPDPNVKKYFVT SYGLCLKSQLVDLKAKGYWEELLDTFRPDIVVKDWFAARRDCGCTYQIRVQLVSADYIILASFE PPPVTIEQWNDATWTEVSHTFSDYPPGVRHILFQHGGQDTQYWAGWYGPRVTNSSIVISNKMTR KLAPSTPQSDNVGAEEAAQSPTHLSSPT hide sequence

RefSeq Acc Id:

XP_013359768 ⟸ XM_013504314

- Peptide Label:

isoform X3

- Sequence:

show sequence

MCATTPGKACAPRPTMALVSINKLPENILLELFTHVPARHLLLRCRPVCSLWRDLIDLVTLWKR
KCLREGFIPKDWDQPVADWKVFYFLCSLRRNLLHNPCAEEDMESWTLDANEGDHWKVESIPGAH
GTNFPDPNVKKYFVTSYGFAARRDCGCTYQIRVQLVSADYIILASFEPPPVTIEQWNDATWTEV
SHTFSDYPPGVRHILFQHGGQDTQYWAGWYGPRVTNSSIVISNKMTRKLAPSTPQSDNVGAEEA
AQSPTHLSSPT

hide sequence

Ensembl Acc Id:

ENSCLAP00000006410 ⟸ ENSCLAT00000006516

Protein Domains

F-box FBA

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000004528	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000006516	ENTREZGENE
	ENSCLAT00000006516.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1280.50	UniProtKB/TrEMBL
	Galactose-binding domain-like	UniProtKB/TrEMBL
InterPro	F-box-assoc_dom	UniProtKB/TrEMBL
	F-box-like_dom_sf	UniProtKB/TrEMBL
	F-box_dom	UniProtKB/TrEMBL
	F-box_only	UniProtKB/TrEMBL
	Galactose-bd-like_sf	UniProtKB/TrEMBL
NCBI Gene	Fbxo6	ENTREZGENE
PANTHER	F-BOX ONLY PROTEIN 6	UniProtKB/TrEMBL
	PTHR12125	UniProtKB/TrEMBL
Pfam	F-box-like	UniProtKB/TrEMBL
	FBA	UniProtKB/TrEMBL
PROSITE	FBA	UniProtKB/TrEMBL
	FBOX	UniProtKB/TrEMBL
SMART	FBA	UniProtKB/TrEMBL
	FBOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49785	UniProtKB/TrEMBL
	SSF81383	UniProtKB/TrEMBL
UniProt	A0A8C2UWE3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD