Fbxo6 (F-box protein 6) - Rat Genome Database

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Gene: Fbxo6 (F-box protein 6) Ictidomys tridecemlineatus
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Symbol: Fbxo6
Name: F-box protein 6
RGD ID: 12464745
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN glycoprotein catabolic process (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog); Familial Atrial Fibrillation 6 (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum quality control compartment (inferred); SCF ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box only protein 6; F-box protein 6, transcript variant X1; F-box protein 6, transcript variant X2; F-box protein 6, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505834,707,679 - 34,713,814 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936474533,254 - 542,907 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936474531,873 - 538,596 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fbxo6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505834,707,679 - 34,713,814 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936474533,254 - 542,907 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936474531,873 - 538,596 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,664,200 - 11,674,354 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl111,664,200 - 11,674,354 (+)EnsemblGRCh38hg38GRCh38
GRCh37111,724,257 - 11,734,411 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,646,768 - 11,656,998 (+)NCBINCBI36Build 36hg18NCBI36
Build 34111,658,446 - 11,668,673NCBI
Celera110,836,207 - 10,846,475 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef110,878,308 - 10,888,516 (+)NCBIHuRef
CHM1_1111,712,136 - 11,722,413 (+)NCBICHM1_1
T2T-CHM13v2.0111,208,255 - 11,218,422 (+)NCBIT2T-CHM13v2.0
Fbxo6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394148,230,173 - 148,236,592 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4148,230,173 - 148,236,597 (-)EnsemblGRCm39 Ensembl
GRCm384148,145,716 - 148,152,135 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4148,145,716 - 148,152,140 (-)EnsemblGRCm38mm10GRCm38
MGSCv374147,519,825 - 147,526,244 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364146,989,587 - 146,995,624 (-)NCBIMGSCv36mm8
Celera4150,407,047 - 150,413,479 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map478.67NCBI
Fbxo6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85163,859,909 - 163,865,693 (-)NCBIGRCr8
mRatBN7.25158,576,729 - 158,582,520 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5158,576,759 - 158,582,525 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5161,293,652 - 161,297,063 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05163,115,443 - 163,118,858 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05163,071,790 - 163,075,208 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05164,956,285 - 164,962,075 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5164,956,280 - 164,959,851 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05168,614,323 - 168,620,072 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45165,223,009 - 165,226,420 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15165,233,196 - 165,236,608 (-)NCBI
Celera5156,856,162 - 156,859,573 (-)NCBICelera
Cytogenetic Map5q36NCBI
Fbxo6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554862,197,467 - 2,201,256 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554862,197,296 - 2,205,947 (-)NCBIChiLan1.0ChiLan1.0
FBXO6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1284,549,519 - 84,554,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl284,549,560 - 84,580,756 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,081,851 - 81,088,009 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0285,212,668 - 85,218,810 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl285,212,675 - 85,218,790 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1281,961,418 - 81,967,576 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0282,962,035 - 82,968,196 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0284,024,909 - 84,031,072 (-)NCBIUU_Cfam_GSD_1.0
FBXO6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl671,768,498 - 71,774,243 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1671,755,335 - 71,774,264 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2665,674,308 - 65,693,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120120,116,125 - 120,127,025 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20120,116,169 - 120,126,920 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605423,984,628 - 23,995,338 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxo6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248181,286,820 - 1,292,755 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248181,286,819 - 1,292,565 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000009949   ⟹   ENSSTOP00000008927
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936474533,254 - 542,907 (+)Ensembl
RefSeq Acc Id: XM_005317456   ⟹   XP_005317513
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505834,707,679 - 34,713,814 (+)NCBI
SpeTri2.0NW_004936474531,873 - 538,596 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021733445   ⟹   XP_021589120
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505834,708,615 - 34,713,814 (+)NCBI
SpeTri2.0NW_004936474533,326 - 538,596 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005317513 (Get FASTA)   NCBI Sequence Viewer  
  XP_021589120 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008927.3
GenBank Protein KAG3282159 (Get FASTA)   NCBI Sequence Viewer  
  KAG3282160 (Get FASTA)   NCBI Sequence Viewer  
  KAG3282161 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005317513   ⟸   XM_005317456
- Peptide Label: isoform X2
- UniProtKB: I3MEJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589120   ⟸   XM_021733445
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSTOP00000008927   ⟸   ENSSTOT00000009949
Protein Domains
F-box   FBA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009949 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009949.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
InterPro F-box-assoc_dom UniProtKB/TrEMBL
  F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  F-box_only UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
NCBI Gene Fbxo6 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 6 UniProtKB/TrEMBL
  PTHR12125 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
  FBA UniProtKB/TrEMBL
PROSITE FBA UniProtKB/TrEMBL
  FBOX UniProtKB/TrEMBL
SMART FBA UniProtKB/TrEMBL
  FBOX UniProtKB/TrEMBL
Superfamily-SCOP SSF49785 UniProtKB/TrEMBL
  SSF81383 UniProtKB/TrEMBL
UniProt I3MEJ5 ENTREZGENE, UniProtKB/TrEMBL