Purb (purine rich element binding protein B) - Rat Genome Database

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Gene: Purb (purine rich element binding protein B) Chinchilla lanigera
Analyze
Symbol: Purb
Name: purine rich element binding protein B
RGD ID: 8836794
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: purine-rich element binding protein B; transcriptional activator protein Pur-beta
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554567,322,973 - 7,323,529 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Purb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554567,322,973 - 7,323,529 (+)NCBIChiLan1.0ChiLan1.0
PURB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38744,876,299 - 44,885,530 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl744,876,299 - 44,885,530 (-)EnsemblGRCh38hg38GRCh38
GRCh37744,915,898 - 44,925,129 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36744,882,417 - 44,891,485 (-)NCBINCBI36Build 36hg18NCBI36
Build 34744,689,133 - 44,698,200NCBI
Celera745,014,669 - 45,023,741 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef744,801,230 - 44,810,302 (-)NCBIHuRef
CHM1_1744,920,237 - 44,929,309 (-)NCBICHM1_1
T2T-CHM13v2.0745,036,709 - 45,045,943 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2744,955,325 - 44,964,397 (-)NCBI
Purb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,417,599 - 6,426,076 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,417,599 - 6,425,917 (-)EnsemblGRCm39 Ensembl
GRCm38116,467,599 - 6,476,076 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,467,599 - 6,475,917 (-)EnsemblGRCm38mm10GRCm38
MGSCv37116,374,776 - 6,375,920 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,374,776 - 6,375,920 (-)NCBIMGSCv36mm8
Celera116,960,150 - 6,961,293 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map114.16NCBI
Purb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,556,296 - 85,558,779 (-)NCBIGRCr8
mRatBN7.21481,342,374 - 81,344,857 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1481,336,448 - 81,351,432 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1485,743,668 - 85,746,151 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,983,466 - 86,985,949 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01483,433,062 - 83,435,545 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,736,876 - 86,739,335 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,736,878 - 86,739,335 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01480,371,417 - 80,373,876 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41487,230,346 - 87,232,805 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1480,223,695 - 80,226,154 (-)NCBICelera
Cytogenetic Map14q21NCBI
PURB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2649,789,512 - 49,802,328 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1798,114,250 - 98,127,055 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0745,590,183 - 45,600,089 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1745,659,121 - 45,673,991 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl745,667,233 - 45,668,159 (-)Ensemblpanpan1.1panPan2
PURB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha162,512,329 - 2,520,763 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01614,340,299 - 14,348,729 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.01613,973,590 - 13,982,018 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01613,952,878 - 13,961,316 (+)NCBIUU_Cfam_GSD_1.0
Purb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118100,526,521 - 100,551,530 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647819,738,252 - 19,747,345 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PURB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1850,510,182 - 50,511,108 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11850,510,010 - 50,518,965 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21855,333,599 - 55,342,149 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PURB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12113,796,087 - 13,805,162 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2113,796,118 - 13,797,056 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660628,731,839 - 8,741,238 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Purb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247407,398,481 - 7,399,434 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247407,398,481 - 7,406,923 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_013520514   ⟹   XP_013375968
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554567,322,973 - 7,323,529 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013375968 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013375968   ⟸   XM_013520514
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC102008380 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Purb  purine rich element binding protein B    purine-rich element binding protein B  Symbol and/or name change 5135510 APPROVED
2015-08-25 Purb  purine-rich element binding protein B  LOC102008380  uncharacterized LOC102008380  Symbol and/or name change 5135510 APPROVED