Purb (purine rich element binding protein B) - Rat Genome Database

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Gene: Purb (purine rich element binding protein B) Mus musculus
Analyze
Symbol: Purb
Name: purine rich element binding protein B
RGD ID: 1557360
MGI Page MGI
Description: Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; SMAD binding activity; and nucleic acid binding activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Acts upstream of or within negative regulation of DNA-templated transcription. Located in nucleus. Is expressed in heart and hindlimb muscle. Orthologous to human PURB (purine rich element binding protein B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310015K15Rik; AA114818; Cager; Cager-2; D11Bwg0414e; PurB beta; purine-rich element-binding protein B; purine-rich single-stranded DNA-binding protein beta; transcriptional activator protein Pur-beta; vascular actin single-stranded DNA-binding factor 2 p44 component
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,417,599 - 6,426,076 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,417,599 - 6,425,917 (-)EnsemblGRCm39 Ensembl
GRCm38116,467,599 - 6,476,076 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,467,599 - 6,475,917 (-)EnsemblGRCm38mm10GRCm38
MGSCv37116,374,776 - 6,375,920 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,374,776 - 6,375,920 (-)NCBIMGSCv36mm8
Celera116,960,150 - 6,961,293 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map114.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9334258   PMID:10318844   PMID:10349636   PMID:10471324   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:11751932   PMID:12477932   PMID:12874279  
PMID:12933792   PMID:15282343   PMID:15777841   PMID:16141072   PMID:16141073   PMID:16436378   PMID:16452087   PMID:16602821   PMID:17121857   PMID:17145772   PMID:17906292   PMID:18344281  
PMID:18495661   PMID:19723774   PMID:19922871   PMID:19996387   PMID:20194497   PMID:20728429   PMID:21267068   PMID:21873635   PMID:22673621   PMID:23723417   PMID:23724822   PMID:27064749  
PMID:28378742   PMID:28671696   PMID:29111324   PMID:30068389   PMID:31138677   PMID:31918924   PMID:32325033   PMID:32434143   PMID:33743134   PMID:36293380   PMID:36417873   PMID:36716953  
PMID:37556352  


Genomics

Comparative Map Data
Purb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,417,599 - 6,426,076 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,417,599 - 6,425,917 (-)EnsemblGRCm39 Ensembl
GRCm38116,467,599 - 6,476,076 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,467,599 - 6,475,917 (-)EnsemblGRCm38mm10GRCm38
MGSCv37116,374,776 - 6,375,920 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,374,776 - 6,375,920 (-)NCBIMGSCv36mm8
Celera116,960,150 - 6,961,293 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map114.16NCBI
PURB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38744,876,299 - 44,885,530 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl744,876,299 - 44,885,530 (-)EnsemblGRCh38hg38GRCh38
GRCh37744,915,898 - 44,925,129 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36744,882,417 - 44,891,485 (-)NCBINCBI36Build 36hg18NCBI36
Build 34744,689,133 - 44,698,200NCBI
Celera745,014,669 - 45,023,741 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef744,801,230 - 44,810,302 (-)NCBIHuRef
CHM1_1744,920,237 - 44,929,309 (-)NCBICHM1_1
T2T-CHM13v2.0745,036,709 - 45,045,943 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2744,955,325 - 44,964,397 (-)NCBI
Purb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,556,296 - 85,558,779 (-)NCBIGRCr8
mRatBN7.21481,342,374 - 81,344,857 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1481,336,448 - 81,351,432 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1485,743,668 - 85,746,151 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,983,466 - 86,985,949 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01483,433,062 - 83,435,545 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,736,876 - 86,739,335 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,736,878 - 86,739,335 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01480,371,417 - 80,373,876 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41487,230,346 - 87,232,805 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1480,223,695 - 80,226,154 (-)NCBICelera
Cytogenetic Map14q21NCBI
Purb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554567,322,973 - 7,323,529 (+)NCBIChiLan1.0ChiLan1.0
PURB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2649,789,512 - 49,802,328 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1798,114,250 - 98,127,055 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0745,590,183 - 45,600,089 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1745,659,121 - 45,673,991 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl745,667,233 - 45,668,159 (-)Ensemblpanpan1.1panPan2
PURB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha162,512,329 - 2,520,763 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01614,340,299 - 14,348,729 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.01613,973,590 - 13,982,018 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01613,952,878 - 13,961,316 (+)NCBIUU_Cfam_GSD_1.0
Purb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118100,526,521 - 100,551,530 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647819,738,252 - 19,747,345 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PURB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1850,510,182 - 50,511,108 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11850,510,010 - 50,518,965 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21855,333,599 - 55,342,149 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PURB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12113,796,087 - 13,805,162 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2113,796,118 - 13,797,056 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660628,731,839 - 8,741,238 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Purb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247407,398,481 - 7,399,434 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247407,398,481 - 7,406,923 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Purb
254 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2935
Count of miRNA genes:838
Interacting mature miRNAs:1198
Transcripts:ENSMUST00000179343
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse

Markers in Region
UniSTS:236517  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38116,469,270 - 6,469,441UniSTSGRCm38
MGSCv37116,369,273 - 6,369,444UniSTSGRCm37
Celera116,954,646 - 6,954,817UniSTS
Cytogenetic Map11A1UniSTS
cM Map113.0UniSTS
BI282072  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38116,467,963 - 6,468,167UniSTSGRCm38
MGSCv37116,367,966 - 6,368,170UniSTSGRCm37
Celera116,953,339 - 6,953,543UniSTS
Cytogenetic Map11A1UniSTS
cM Map113.0UniSTS
AA859841  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38116,474,972 - 6,475,170UniSTSGRCm38
MGSCv37116,374,975 - 6,375,173UniSTSGRCm37
Celera116,960,348 - 6,960,546UniSTS
Cytogenetic Map11A1UniSTS
cM Map113.0UniSTS
D11Bwg0414e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38116,467,674 - 6,467,827UniSTSGRCm38
MGSCv37116,367,677 - 6,367,830UniSTSGRCm37
Celera116,953,050 - 6,953,203UniSTS
Cytogenetic Map11A1UniSTS
cM Map113.0UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000179343   ⟹   ENSMUSP00000136957
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,417,599 - 6,425,917 (-)Ensembl
GRCm38.p6 Ensembl116,467,599 - 6,475,917 (-)Ensembl
RefSeq Acc Id: NM_011221   ⟹   NP_035351
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,417,599 - 6,426,076 (-)NCBI
GRCm38116,467,599 - 6,476,076 (-)ENTREZGENE
MGSCv37116,374,776 - 6,375,920 (-)RGD
Celera116,952,975 - 6,961,452 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_035351   ⟸   NM_011221
- UniProtKB: O35295 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136957   ⟸   ENSMUST00000179343

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35295-F1-model_v2 AlphaFold O35295 1-324 view protein structure

Promoters
RGD ID:6821676
Promoter ID:MM_KWN:6365
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_011221
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36116,372,501 - 6,376,317 (-)MPROMDB
RGD ID:8673906
Promoter ID:EPDNEW_M14983
Type:initiation region
Name:Purb_1
Description:Mus musculus purine rich element binding protein B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38116,476,024 - 6,476,084EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1338779 AgrOrtholog
Ensembl Genes ENSMUSG00000094483 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000179343 ENTREZGENE
  ENSMUST00000179343.3 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.450.700 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.2450.30 UniProtKB/Swiss-Prot
InterPro PUR-bd_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19291 UniProtKB/Swiss-Prot
MGD MGI:1338779 ENTREZGENE
NCBI Gene 19291 ENTREZGENE
PANTHER PTHR12611 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12611:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PurA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Purb PhenoGen
SMART PUR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt O35295 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3UTJ8_MOUSE UniProtKB/TrEMBL
  Q8BQK8_MOUSE UniProtKB/TrEMBL
  Q9D7C3_MOUSE UniProtKB/TrEMBL