Phkb (phosphorylase kinase regulatory subunit beta) - Rat Genome Database

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Pathways
Gene: Phkb (phosphorylase kinase regulatory subunit beta) Chinchilla lanigera
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Symbol: Phkb
Name: phosphorylase kinase regulatory subunit beta
RGD ID: 8832261
Description: INVOLVED IN glucose homeostasis (ortholog); glycogen catabolic process (ortholog); positive regulation of glycogen catabolic process (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH Breast Cancer, Familial (ortholog); cervical cancer (ortholog); colon adenocarcinoma (ortholog); FOUND IN phosphorylase kinase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphorylase b kinase regulatory subunit beta; phosphorylase kinase, beta
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554747,598,463 - 7,801,083 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554747,599,657 - 7,801,083 (-)NCBIChiLan1.0ChiLan1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Phkb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554747,598,463 - 7,801,083 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554747,599,657 - 7,801,083 (-)NCBIChiLan1.0ChiLan1.0
PHKB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381647,461,299 - 47,701,523 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1647,461,123 - 47,701,524 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371647,495,210 - 47,735,434 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361646,052,739 - 46,291,755 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341646,052,738 - 46,291,755NCBI
Celera1632,003,151 - 32,243,373 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
HuRef1633,385,772 - 33,625,996 (+)NCBIHuRef
CHM1_11648,902,240 - 49,142,934 (+)NCBICHM1_1
T2T-CHM13v2.01653,258,117 - 53,498,326 (+)NCBIT2T-CHM13v2.0
Phkb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39886,567,489 - 86,790,883 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl886,567,133 - 86,790,889 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38885,840,853 - 86,064,251 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,840,959 - 86,061,376 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37888,364,901 - 88,584,541 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36888,731,107 - 88,950,747 (+)NCBIMGSCv36mm8
Celera890,138,260 - 90,352,039 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.61NCBI
Phkb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81937,179,937 - 37,383,979 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1937,186,042 - 37,383,877 (-)EnsemblGRCr8
mRatBN7.21921,013,719 - 21,210,671 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1921,025,733 - 21,210,633 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1922,713,124 - 22,893,420 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01927,907,652 - 28,087,942 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01930,870,462 - 31,050,747 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1931,036,236 - 31,224,712 (-)NCBI
Lyon_Normotensive1929,153,982 - 29,342,447 (-)NCBI
Lyon_Hypertensive1931,007,679 - 31,196,145 (-)NCBI
F344_StmMcwi1928,854,596 - 29,040,494 (-)NCBI
Rnor_6.01922,031,684 - 22,281,788 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1922,033,228 - 22,281,778 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01933,031,043 - 33,289,256 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41922,373,355 - 22,561,509 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1920,893,425 - 21,075,361 (-)NCBICelera
RGSC_v3.11922,378,643 - 22,380,741 (-)NCBI
Cytogenetic Map19p11NCBI
PHKB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21856,914,379 - 57,154,821 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11662,819,336 - 63,059,963 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01627,720,300 - 27,960,740 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11646,612,062 - 46,853,157 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1646,612,053 - 46,853,157 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
PHKB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1267,260,532 - 67,476,596 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl267,254,542 - 67,476,532 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha263,836,201 - 64,052,047 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0267,818,656 - 68,034,694 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl267,818,659 - 68,034,650 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1264,631,779 - 64,847,974 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0265,655,460 - 65,871,221 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,543,573 - 66,759,826 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Phkb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11527,057,887 - 27,278,945 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_02440934958,586,224 - 58,809,915 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936475779,302 - 1,003,262 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936475779,238 - 1,002,851 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHKB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl636,991,274 - 37,193,593 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1636,994,424 - 37,193,631 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2632,141,368 - 32,246,744 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHKB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1544,297,949 - 44,522,176 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366604743,031,736 - 43,259,030 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1533,288,396 - 33,512,445 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl533,291,009 - 33,513,244 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Phkb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249141,013,828 - 1,235,023 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046249141,013,145 - 1,234,610 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl825,452,956 - 25,661,694 (+)Ensembl
Phkb
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11713,263,325 - 13,438,974 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000010444   ⟹   ENSCLAP00000010314
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554747,598,463 - 7,801,083 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000010445   ⟹   ENSCLAP00000010315
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554747,598,463 - 7,801,083 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000010446   ⟹   ENSCLAP00000010316
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554747,686,392 - 7,801,083 (-)Ensembl
RefSeq Acc Id: XM_005401407   ⟹   XP_005401464
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554747,599,657 - 7,801,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005401408   ⟹   XP_005401465
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554747,599,657 - 7,801,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013502733   ⟹   XP_013358187
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554747,599,657 - 7,801,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013502734   ⟹   XP_013358188
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554747,599,657 - 7,801,071 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013502735   ⟹   XP_013358189
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554747,599,657 - 7,801,083 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005401465   ⟸   XM_005401408
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V772 (UniProtKB/TrEMBL),   A0A8C2VAZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005401464   ⟸   XM_005401407
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VAZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013358189   ⟸   XM_013502735
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VAZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013358187   ⟸   XM_013502733
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VAZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013358188   ⟸   XM_013502734
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VAZ3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000010314   ⟸   ENSCLAT00000010444
Ensembl Acc Id: ENSCLAP00000010315   ⟸   ENSCLAT00000010445
Ensembl Acc Id: ENSCLAP00000010316   ⟸   ENSCLAT00000010446

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007130 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010444.1 UniProtKB/TrEMBL
  ENSCLAT00000010445 ENTREZGENE
  ENSCLAT00000010445.1 UniProtKB/TrEMBL
  ENSCLAT00000010446.1 UniProtKB/TrEMBL
InterPro 6-hairpin_glycosidase_sf UniProtKB/TrEMBL
  GH15-like UniProtKB/TrEMBL
  KPBA/B_C UniProtKB/TrEMBL
  PHK_A/B_su UniProtKB/TrEMBL
NCBI Gene Phkb ENTREZGENE
PANTHER PHOSPHORYLASE B KINASE REGULATORY SUBUNIT BETA UniProtKB/TrEMBL
  PTHR10749 UniProtKB/TrEMBL
Pfam Glyco_hydro_15 UniProtKB/TrEMBL
  KPBB_C UniProtKB/TrEMBL
Superfamily-SCOP SSF48208 UniProtKB/TrEMBL
UniProt A0A8C2V772 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V9W7_CHILA UniProtKB/TrEMBL
  A0A8C2VAZ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Phkb  phosphorylase kinase regulatory subunit beta    phosphorylase kinase, beta  Symbol and/or name change 5135510 APPROVED