PHKB (phosphorylase kinase regulatory subunit beta) - Rat Genome Database

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Pathways
Gene: PHKB (phosphorylase kinase regulatory subunit beta) Sus scrofa
Analyze
Symbol: PHKB
Name: phosphorylase kinase regulatory subunit beta
RGD ID: 14009571
Description: ENCODES a protein that exhibits calmodulin binding (inferred); INVOLVED IN glucose homeostasis (ortholog); positive regulation of glycogen catabolic process (ortholog); protein phosphorylation (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH genetic disease (ortholog); glycogen storage disease IXB (ortholog); FOUND IN phosphorylase kinase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphorylase b kinase regulatory subunit beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl636,991,274 - 37,193,593 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1636,994,424 - 37,193,631 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2632,141,368 - 32,246,744 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PHKB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl636,991,274 - 37,193,593 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1636,994,424 - 37,193,631 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2632,141,368 - 32,246,744 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHKB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381647,461,299 - 47,701,523 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1647,461,123 - 47,701,523 (+)Ensemblhg38GRCh38
GRCh371647,495,210 - 47,735,434 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361646,052,739 - 46,291,755 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341646,052,738 - 46,291,755NCBI
Celera1632,003,151 - 32,243,373 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
HuRef1633,385,772 - 33,625,996 (+)NCBIHuRef
CHM1_11648,902,240 - 49,142,934 (+)NCBICHM1_1
T2T-CHM13v2.01653,258,117 - 53,498,326 (+)NCBIT2T-CHM13v2.0
Phkb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39886,567,489 - 86,790,883 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl886,567,588 - 86,788,005 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38885,840,853 - 86,064,251 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,840,959 - 86,061,376 (+)Ensemblmm10GRCm38
MGSCv37888,364,901 - 88,584,541 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36888,731,107 - 88,950,747 (+)NCBIMGSCv36mm8
Celera890,138,260 - 90,352,039 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.61NCBI
Phkb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81937,179,937 - 37,383,979 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1937,186,042 - 37,383,877 (-)EnsemblGRCr8
mRatBN7.21921,013,719 - 21,210,671 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1921,025,733 - 21,210,633 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1922,713,124 - 22,893,420 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01927,907,652 - 28,087,942 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01930,870,462 - 31,050,747 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01922,031,684 - 22,281,788 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1922,033,228 - 22,281,778 (-)Ensemblrn6Rnor6.0
Rnor_5.01933,031,043 - 33,289,256 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41922,373,355 - 22,561,509 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1920,893,425 - 21,075,361 (-)NCBICelera
RGSC_v3.11922,378,643 - 22,380,741 (-)NCBI
Cytogenetic Map19p11NCBI
Phkb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554747,598,463 - 7,801,083 (-)Ensembl
ChiLan1.0NW_0049554747,599,657 - 7,801,083 (-)NCBIChiLan1.0ChiLan1.0
PHKB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21856,914,379 - 57,154,821 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11662,819,336 - 63,059,963 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01627,720,300 - 27,960,740 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11646,612,062 - 46,853,157 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1646,612,053 - 46,853,157 (+)EnsemblpanPan2panpan1.1
PHKB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1267,260,532 - 67,476,596 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl267,254,542 - 67,476,532 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha263,836,201 - 64,052,047 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0267,818,656 - 68,034,694 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl267,818,659 - 68,034,650 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1264,631,779 - 64,847,974 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0265,655,460 - 65,871,221 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,543,573 - 66,759,826 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Phkb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934958,586,224 - 58,809,915 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936475779,302 - 1,003,262 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936475779,238 - 1,002,851 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHKB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1533,288,396 - 33,512,445 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl533,291,009 - 33,513,244 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604743,031,736 - 43,259,030 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phkb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249141,013,145 - 1,234,610 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249141,013,828 - 1,235,023 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Phkb
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11713,263,325 - 13,438,974 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in PHKB
5552 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000003145   ⟹   ENSSSCP00000003064
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl636,991,274 - 37,193,593 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000040453   ⟹   ENSSSCP00000055453
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl636,993,535 - 37,141,766 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000050959   ⟹   ENSSSCP00000042929
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl636,991,274 - 37,193,593 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000066351   ⟹   ENSSSCP00000037385
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl636,991,274 - 37,193,593 (-)Ensembl
RefSeq Acc Id: XM_013998278   ⟹   XP_013853732
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1636,994,425 - 37,193,608 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013998279   ⟹   XP_013853733
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1636,994,425 - 37,193,631 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094235   ⟹   XP_020949894
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1636,994,425 - 37,193,603 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094236   ⟹   XP_020949895
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1636,994,424 - 37,193,630 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094237   ⟹   XP_020949896
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1636,994,425 - 37,193,582 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094238   ⟹   XP_020949897
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1636,994,425 - 37,193,592 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013853732 (Get FASTA)   NCBI Sequence Viewer  
  XP_013853733 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949894 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949895 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949896 (Get FASTA)   NCBI Sequence Viewer  
  XP_020949897 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000003064.4
  ENSSSCP00000037385.2
  ENSSSCP00000042929
  ENSSSCP00000042929.1
  ENSSSCP00015003869.1
  ENSSSCP00015003913.1
  ENSSSCP00015003973.1
  ENSSSCP00015004014.1
  ENSSSCP00015004083.1
  ENSSSCP00025010365.1
  ENSSSCP00025010377.1
  ENSSSCP00025010417.1
  ENSSSCP00030035380.1
  ENSSSCP00030035397.1
  ENSSSCP00030035446.1
  ENSSSCP00030035485.1
  ENSSSCP00035023435.1
  ENSSSCP00035023439.1
  ENSSSCP00040023402.1
  ENSSSCP00040023526.1
  ENSSSCP00045028571.1
  ENSSSCP00045028682.1
  ENSSSCP00045028884.1
  ENSSSCP00045029109.1
  ENSSSCP00050011256.1
  ENSSSCP00050011267.1
  ENSSSCP00050011281.1
  ENSSSCP00050011296.1
  ENSSSCP00050011312.1
  ENSSSCP00055004423.1
  ENSSSCP00055004442.1
  ENSSSCP00055004538.1
  ENSSSCP00060030416.1
  ENSSSCP00060030419.1
  ENSSSCP00060030420.1
  ENSSSCP00060030422.1
  ENSSSCP00060030425.1
  ENSSSCP00065044898.1
  ENSSSCP00065044921.1
  ENSSSCP00065044980.1
  ENSSSCP00070020525.1
  ENSSSCP00070020537.1
  ENSSSCP00070020549.1
  ENSSSCP00070020577.1
  ENSSSCP00070020582.1
RefSeq Acc Id: XP_020949895   ⟸   XM_021094236
- Peptide Label: isoform X4
- UniProtKB: A0A4X1TYG1 (UniProtKB/TrEMBL),   A0A8D0RB05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013853733   ⟸   XM_013998279
- Peptide Label: isoform X3
- UniProtKB: A0A287AGE8 (UniProtKB/TrEMBL),   A0A4X1TTG1 (UniProtKB/TrEMBL),   A0A8D0XDV7 (UniProtKB/TrEMBL),   F1RP07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013853732   ⟸   XM_013998278
- Peptide Label: isoform X2
- UniProtKB: A0A8D0RB05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949894   ⟸   XM_021094235
- Peptide Label: isoform X1
- UniProtKB: A0A8D0XDV7 (UniProtKB/TrEMBL),   F1RP07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949897   ⟸   XM_021094238
- Peptide Label: isoform X5
- UniProtKB: A0A480XH45 (UniProtKB/TrEMBL),   A0A8D0RB05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949896   ⟸   XM_021094237
- Peptide Label: isoform X4
- UniProtKB: A0A4X1TYG1 (UniProtKB/TrEMBL),   A0A8D0RB05 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000055453   ⟸   ENSSSCT00000040453
Ensembl Acc Id: ENSSSCP00000042929   ⟸   ENSSSCT00000050959
Ensembl Acc Id: ENSSSCP00000037385   ⟸   ENSSSCT00000066351
Ensembl Acc Id: ENSSSCP00000003064   ⟸   ENSSSCT00000003145

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002844 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015007348 UniProtKB/TrEMBL
  ENSSSCG00025017823 UniProtKB/TrEMBL
  ENSSSCG00030055506 UniProtKB/TrEMBL
  ENSSSCG00035043838 UniProtKB/TrEMBL
  ENSSSCG00040040198 UniProtKB/TrEMBL
  ENSSSCG00045024111 UniProtKB/TrEMBL
  ENSSSCG00050020196 UniProtKB/TrEMBL
  ENSSSCG00055002910 UniProtKB/TrEMBL
  ENSSSCG00060051742 UniProtKB/TrEMBL
  ENSSSCG00065073886 UniProtKB/TrEMBL
  ENSSSCG00070012679 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003145.5 UniProtKB/TrEMBL
  ENSSSCT00000050959 ENTREZGENE
  ENSSSCT00000050959.3 UniProtKB/TrEMBL
  ENSSSCT00000066351.3 UniProtKB/TrEMBL
  ENSSSCT00015009729.1 UniProtKB/TrEMBL
  ENSSSCT00015009859.1 UniProtKB/TrEMBL
  ENSSSCT00015010015.1 UniProtKB/TrEMBL
  ENSSSCT00015010124.1 UniProtKB/TrEMBL
  ENSSSCT00015010319.1 UniProtKB/TrEMBL
  ENSSSCT00025024564.1 UniProtKB/TrEMBL
  ENSSSCT00025024586.1 UniProtKB/TrEMBL
  ENSSSCT00025024671.1 UniProtKB/TrEMBL
  ENSSSCT00030077448.1 UniProtKB/TrEMBL
  ENSSSCT00030077481.1 UniProtKB/TrEMBL
  ENSSSCT00030077604.1 UniProtKB/TrEMBL
  ENSSSCT00030077685.1 UniProtKB/TrEMBL
  ENSSSCT00035058303.1 UniProtKB/TrEMBL
  ENSSSCT00035058314.1 UniProtKB/TrEMBL
  ENSSSCT00040056251.1 UniProtKB/TrEMBL
  ENSSSCT00040056548.1 UniProtKB/TrEMBL
  ENSSSCT00045041158.1 UniProtKB/TrEMBL
  ENSSSCT00045041324.1 UniProtKB/TrEMBL
  ENSSSCT00045041641.1 UniProtKB/TrEMBL
  ENSSSCT00045041925.1 UniProtKB/TrEMBL
  ENSSSCT00050027242.1 UniProtKB/TrEMBL
  ENSSSCT00050027277.1 UniProtKB/TrEMBL
  ENSSSCT00050027309.1 UniProtKB/TrEMBL
  ENSSSCT00050027334.1 UniProtKB/TrEMBL
  ENSSSCT00050027363.1 UniProtKB/TrEMBL
  ENSSSCT00055005692.1 UniProtKB/TrEMBL
  ENSSSCT00055005712.1 UniProtKB/TrEMBL
  ENSSSCT00055005821.1 UniProtKB/TrEMBL
  ENSSSCT00060070448.1 UniProtKB/TrEMBL
  ENSSSCT00060070459.1 UniProtKB/TrEMBL
  ENSSSCT00060070465.1 UniProtKB/TrEMBL
  ENSSSCT00060070472.1 UniProtKB/TrEMBL
  ENSSSCT00060070480.1 UniProtKB/TrEMBL
  ENSSSCT00065101868.1 UniProtKB/TrEMBL
  ENSSSCT00065101919.1 UniProtKB/TrEMBL
  ENSSSCT00065102036.1 UniProtKB/TrEMBL
  ENSSSCT00070024785.1 UniProtKB/TrEMBL
  ENSSSCT00070024797.1 UniProtKB/TrEMBL
  ENSSSCT00070024812.1 UniProtKB/TrEMBL
  ENSSSCT00070024840.1 UniProtKB/TrEMBL
  ENSSSCT00070024845.1 UniProtKB/TrEMBL
InterPro 6-hairpin_glycosidase_sf UniProtKB/TrEMBL
  GH15-like UniProtKB/TrEMBL
  KPBA/B_C UniProtKB/TrEMBL
  PHK_A/B_su UniProtKB/TrEMBL
NCBI Gene PHKB ENTREZGENE
PANTHER PHOSPHORYLASE B KINASE REGULATORY SUBUNIT BETA UniProtKB/TrEMBL
  PTHR10749 UniProtKB/TrEMBL
Pfam Glyco_hydro_15 UniProtKB/TrEMBL
  KPBB_C UniProtKB/TrEMBL
Superfamily-SCOP SSF48208 UniProtKB/TrEMBL
UniProt A0A287A0V9_PIG UniProtKB/TrEMBL
  A0A287AGE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A480XH45 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TTG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TTH1_PIG UniProtKB/TrEMBL
  A0A4X1TYG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0K8K3_PIG UniProtKB/TrEMBL
  A0A8D0KFT1_PIG UniProtKB/TrEMBL
  A0A8D0LVY1_PIG UniProtKB/TrEMBL
  A0A8D0MK51_PIG UniProtKB/TrEMBL
  A0A8D0R6Z1_PIG UniProtKB/TrEMBL
  A0A8D0RB05 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XDV7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ELY7_PIG UniProtKB/TrEMBL
  A0A8D1PM11_PIG UniProtKB/TrEMBL
  F1RP07 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:98532 ENTREZGENE