PHKB (phosphorylase kinase regulatory subunit beta) - Rat Genome Database

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Pathways
Gene: PHKB (phosphorylase kinase regulatory subunit beta) Pan paniscus
Analyze
Symbol: PHKB
Name: phosphorylase kinase regulatory subunit beta
RGD ID: 12026938
Description: ENCODES a protein that exhibits calmodulin binding (inferred); INVOLVED IN glucose homeostasis (ortholog); positive regulation of glycogen catabolic process (ortholog); protein phosphorylation (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH Breast Cancer, Familial (ortholog); cervical cancer (ortholog); colon adenocarcinoma (ortholog); FOUND IN phosphorylase kinase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphorylase b kinase regulatory subunit beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21856,914,379 - 57,154,821 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11662,819,336 - 63,059,963 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01627,720,300 - 27,960,740 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11646,612,062 - 46,853,157 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1646,612,053 - 46,853,157 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PHKB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21856,914,379 - 57,154,821 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11662,819,336 - 63,059,963 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01627,720,300 - 27,960,740 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11646,612,062 - 46,853,157 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1646,612,053 - 46,853,157 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
PHKB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381647,461,299 - 47,701,523 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1647,461,123 - 47,701,524 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371647,495,210 - 47,735,434 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361646,052,739 - 46,291,755 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341646,052,738 - 46,291,755NCBI
Celera1632,003,151 - 32,243,373 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
HuRef1633,385,772 - 33,625,996 (+)NCBIHuRef
CHM1_11648,902,240 - 49,142,934 (+)NCBICHM1_1
T2T-CHM13v2.01653,258,117 - 53,498,326 (+)NCBIT2T-CHM13v2.0
Phkb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39886,567,489 - 86,790,883 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl886,567,133 - 86,790,889 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38885,840,853 - 86,064,251 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,840,959 - 86,061,376 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37888,364,901 - 88,584,541 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36888,731,107 - 88,950,747 (+)NCBIMGSCv36mm8
Celera890,138,260 - 90,352,039 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.61NCBI
Phkb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81937,179,937 - 37,383,979 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1937,186,042 - 37,383,877 (-)EnsemblGRCr8
mRatBN7.21921,013,719 - 21,210,671 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1921,025,733 - 21,210,633 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1922,713,124 - 22,893,420 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01927,907,652 - 28,087,942 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01930,870,462 - 31,050,747 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1931,036,236 - 31,224,712 (-)NCBI
Lyon_Normotensive1929,153,982 - 29,342,447 (-)NCBI
Lyon_Hypertensive1931,007,679 - 31,196,145 (-)NCBI
F344_StmMcwi1928,854,596 - 29,040,494 (-)NCBI
Rnor_6.01922,031,684 - 22,281,788 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1922,033,228 - 22,281,778 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01933,031,043 - 33,289,256 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41922,373,355 - 22,561,509 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1920,893,425 - 21,075,361 (-)NCBICelera
RGSC_v3.11922,378,643 - 22,380,741 (-)NCBI
Cytogenetic Map19p11NCBI
Phkb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554747,598,463 - 7,801,083 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554747,599,657 - 7,801,083 (-)NCBIChiLan1.0ChiLan1.0
PHKB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1267,260,532 - 67,476,596 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl267,254,542 - 67,476,532 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha263,836,201 - 64,052,047 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0267,818,656 - 68,034,694 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl267,818,659 - 68,034,650 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1264,631,779 - 64,847,974 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0265,655,460 - 65,871,221 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,543,573 - 66,759,826 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Phkb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11527,057,887 - 27,278,945 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_02440934958,586,224 - 58,809,915 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936475779,302 - 1,003,262 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936475779,238 - 1,002,851 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHKB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl636,991,274 - 37,193,593 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1636,994,424 - 37,193,631 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2632,141,368 - 32,246,744 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHKB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1544,297,949 - 44,522,176 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366604743,031,736 - 43,259,030 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1533,288,396 - 33,512,445 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl533,291,009 - 33,513,244 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Phkb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249141,013,828 - 1,235,023 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046249141,013,145 - 1,234,610 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl825,452,956 - 25,661,694 (+)Ensembl
Phkb
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11713,263,325 - 13,438,974 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000046490   ⟹   ENSPPAP00000023665
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1646,612,053 - 46,853,157 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000046513   ⟹   ENSPPAP00000023687
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1646,612,053 - 46,853,157 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000046529   ⟹   ENSPPAP00000023705
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1646,612,076 - 46,852,706 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000046535   ⟹   ENSPPAP00000023710
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1646,647,743 - 46,852,070 (+)Ensembl
RefSeq Acc Id: XM_003819794   ⟹   XP_003819842
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21856,914,382 - 57,154,821 (+)NCBI
NHGRI_mPanPan11662,819,339 - 63,059,963 (+)NCBI
Mhudiblu_PPA_v01627,720,303 - 27,960,740 (+)NCBI
PanPan1.11646,612,228 - 46,852,716 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003819795   ⟹   XP_003819843
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21856,914,400 - 57,154,821 (+)NCBI
NHGRI_mPanPan11662,819,336 - 63,059,963 (+)NCBI
Mhudiblu_PPA_v01627,720,300 - 27,960,036 (+)NCBI
PanPan1.11646,612,080 - 46,853,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008973201   ⟹   XP_008971449
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21856,914,394 - 57,154,821 (+)NCBI
NHGRI_mPanPan11662,819,361 - 63,059,963 (+)NCBI
Mhudiblu_PPA_v01627,720,300 - 27,960,740 (+)NCBI
PanPan1.11646,612,082 - 46,853,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008973202   ⟹   XP_008971450
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21856,914,379 - 57,154,821 (+)NCBI
NHGRI_mPanPan11662,819,336 - 63,059,963 (+)NCBI
Mhudiblu_PPA_v01627,720,300 - 27,959,676 (+)NCBI
PanPan1.11646,612,062 - 46,853,157 (+)NCBI
Sequence:
RefSeq Acc Id: XP_008971450   ⟸   XM_008973202
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B3W5 (UniProtKB/TrEMBL),   A0A2R9B409 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003819843   ⟸   XM_003819795
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B406 (UniProtKB/TrEMBL),   A0A2R9B409 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008971449   ⟸   XM_008973201
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B2B7 (UniProtKB/TrEMBL),   A0A2R9B409 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003819842   ⟸   XM_003819794
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B3W5 (UniProtKB/TrEMBL),   A0A2R9B409 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000023665   ⟸   ENSPPAT00000046490
Ensembl Acc Id: ENSPPAP00000023687   ⟸   ENSPPAT00000046513
Ensembl Acc Id: ENSPPAP00000023705   ⟸   ENSPPAT00000046529
Ensembl Acc Id: ENSPPAP00000023710   ⟸   ENSPPAT00000046535

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034914 Ensembl, UniProtKB/TrEMBL
  ENSPPAG00050016750 ENTREZGENE
Ensembl Transcript ENSPPAT00000046490.1 UniProtKB/TrEMBL
  ENSPPAT00000046513.1 UniProtKB/TrEMBL
  ENSPPAT00000046529.1 UniProtKB/TrEMBL
  ENSPPAT00000046535.1 UniProtKB/TrEMBL
  ENSPPAT00050035150 ENTREZGENE
  ENSPPAT00050035162 ENTREZGENE
  ENSPPAT00050035169 ENTREZGENE
InterPro 6-hairpin_glycosidase_sf UniProtKB/TrEMBL
  GH15-like UniProtKB/TrEMBL
  KPBA/B_C UniProtKB/TrEMBL
  PHK_A/B_su UniProtKB/TrEMBL
KEGG Report pps:100976010 UniProtKB/TrEMBL
NCBI Gene PHKB ENTREZGENE
PANTHER PHOSPHORYLASE B KINASE REGULATORY SUBUNIT BETA UniProtKB/TrEMBL
  PTHR10749 UniProtKB/TrEMBL
Pfam Glyco_hydro_15 UniProtKB/TrEMBL
  KPBB_C UniProtKB/TrEMBL
Superfamily-SCOP SSF48208 UniProtKB/TrEMBL
UniProt A0A2R9B2B7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B3W5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B406 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B409 ENTREZGENE, UniProtKB/TrEMBL