Commd5 (COMM domain containing 5)

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Gene: Commd5 (COMM domain containing 5) Chinchilla lanigera

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Symbol:

Commd5

Name:

COMM domain containing 5

RGD ID:

8830029

Description:

INVOLVED IN positive regulation of cell growth (ortholog); positive regulation of epithelial cell differentiation (ortholog); proximal tubule morphogenesis (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

COMM domain-containing protein 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	3,322,253 - 3,324,313 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	3,322,253 - 3,324,313 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of cell growth (ISO)

positive regulation of epithelial cell differentiation (ISO)

proximal tubule morphogenesis (ISO)

Cellular Component

cytosol (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Commd5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	3,322,253 - 3,324,313 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	3,322,253 - 3,324,313 (-)	NCBI	ChiLan1.0	ChiLan1.0

COMMD5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	144,837,978 - 144,853,556 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	144,841,042 - 144,853,736 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	146,075,561 - 146,078,941 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	146,046,355 - 146,049,736 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	146,034,168 - 146,049,203	NCBI
Celera	8	142,252,099 - 142,255,480 (-)	NCBI		Celera
Cytogenetic Map	8	q24.3	NCBI
HuRef	8	141,191,401 - 141,194,782 (-)	NCBI		HuRef
CHM1_1	8	146,113,837 - 146,117,218 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	146,011,722 - 146,054,961 (-)	NCBI		T2T-CHM13v2.0

Commd5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	76,784,141 - 76,786,223 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	76,784,110 - 76,785,505 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	76,899,941 - 76,901,297 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	76,899,910 - 76,901,305 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	76,730,371 - 76,731,727 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	76,727,196 - 76,728,552 (+)	NCBI		MGSCv36	mm8
Celera	15	78,394,972 - 78,396,328 (+)	NCBI		Celera
Cytogenetic Map	15	D3	NCBI
cM Map	15	36.28	NCBI

Commd5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	110,502,492 - 110,503,916 (+)	NCBI		GRCr8
mRatBN7.2	7	108,621,766 - 108,623,616 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	108,598,673 - 108,624,764 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	110,364,881 - 110,366,305 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	112,588,466 - 112,589,890 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	112,549,895 - 112,551,319 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	117,963,213 - 117,965,010 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	118,502,676 - 118,504,097 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	7	117,963,740 - 117,964,414 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	118,495,267 - 118,497,078 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	114,949,725 - 114,951,149 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	114,983,954 - 114,985,374 (+)	NCBI
Celera	7	104,970,718 - 104,972,142 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

COMMD5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	162,349,677 - 162,350,841 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	137,881,305 - 137,889,248 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	141,623,725 - 141,627,532 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	144,604,228 - 144,607,656 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	144,604,718 - 144,605,392 (-)	Ensembl	panpan1.1		panPan2

COMMD5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	38,059,170 - 38,060,923 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	38,060,093 - 38,060,767 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	38,019,322 - 38,021,284 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	38,532,633 - 38,534,595 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	38,533,549 - 38,534,223 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	38,224,204 - 38,226,166 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	38,333,055 - 38,335,015 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	38,809,445 - 38,811,407 (+)	NCBI		UU_Cfam_GSD_1.0

Commd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	165,788 - 167,805 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	7,591,783 - 7,594,509 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	7,591,783 - 7,593,904 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COMMD5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	178,093 - 181,190 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	178,527 - 180,842 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	8,465 - 10,782 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COMMD5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	139,053,761 - 139,057,069 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	139,054,225 - 139,054,899 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	783,946 - 787,442 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Commd5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	12,153,120 - 12,155,452 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	12,154,180 - 12,155,452 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005395929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005395930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01045066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDK01146066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000014170 ⟹ ENSCLAP00000014013

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955454	3,322,253 - 3,324,313 (-)	Ensembl

RefSeq Acc Id:

XM_005395929 ⟹ XP_005395986

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955454	3,322,253 - 3,324,313 (-)	NCBI

Sequence:

show sequence

TCCGGCGTTCCTAGAGCGGCTCGGAAGTGGCCGTGGCTTGCTTCCTCTAATCGCGCCCGCTTCC
GGCACCCGCCTTACAGCTGTGGATCGCTTTCGCTAGGCAGCTGAGGTTGGGACCTCTCTCCAGG
GCTGATCCTGGGCTGATCAAGGAGGAAGAAGCAGTGATGTCTGCCTTAGGGGCTGCAGCTCTGT
ACCTGCATCATCCTGCTGACAGTCACAGTGGCGGGGTCAGTTTTCTGGGGGCCCAGCTCCCTCC
ACAGGTGGCAGCAATGGCCCGGCTCCTAGAGGACCTGGACAGAAGCGTGTTCAGAAAATTACTG
AAGCTTGTGGTCAGCAGCCTTCAGGGGGAGAATTGCCAGGAGGCTGTACAACGCCTTGGTGTCA
GTGCCAACCTATCAGAGGAACGGCTGGGTGCCCTGCTTGCAGGAACACACACATTGCTCCGGCA
GGCCCTCCGGCTGCCCCCCACCAGCCTGAAACCTGATGCCTTTAGGGACCAGCTCCAGGAGCTT
GGTATCCCCGAAGACCTGGTTGGAGATTTGGCCAGTGTGGTATTTGGGGCCCAGCGCCCCTTCC
TTGACTCTGTGGCCGGGAAGCAGAGGGCCTGGCTGCCCCACCTTGCTGACTTTAGGTGGCGGGT
AGATGTGGCTATCTCCACAAGTGCCCTGGCCCGATCCCTGCAACCAAGTGTCCTGATGCAGCTC
AAGCTTTCAGATGGGTCAGCATACCGCTTTGAGGTCCCCACGGCCAAGTTCCAGGAGCTTCGGT
ACAGTGTCGCTCTGGTCCTGAAGGAGATAGCAGATCTGGAGAAGAAATGTGAGCGCAAACTGCA
GGACTGAACCCTCACCCAGCCAGTGTTGCAATCTGGGAGCAGCTTCTCCTTTCCATGAAGCAGG
CTGTCGAGTGAGTGAATGTAAGGATGGAATTTTCTGTTTAAATGAAGACAGTTGTGCCTTTTTT
TCTTACGGAAGTAAAAACAACTATTAAAAACATGTTTCTGTAGGTGGATGTTAAACTACACACC
TGTTCTGTTTATGGCTGTTGGTCTTTGCTGTTGGGTATGCCCATCTATGGCCAGGTGGAGGTCT
AGGGTCCGGGTTATGGCTCTGAAGATACCATGAAGTTGCATAGCCTCACCTTCTAAAGCACCTG
AACTTTCTCTGCTCATTGTTTTTGTAAATCCTGTATTTTGGTGTGGGCATTTTCTTTTTTCGCA
AACAAAATTTCAGGGCTTTATTATTTTACAGATCCATTTCTAACTTTAGTGTCATTAAAATGCT
AAAA

hide sequence

RefSeq Acc Id:

XM_005395930 ⟹ XP_005395987

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955454	3,322,253 - 3,324,207 (-)	NCBI

Sequence:

show sequence

GGGTTGTCAGGGTTTTGGGGTTGTGGGGTCGTGGGGTTGTCTTCCCAGGCACAGAGACCCAGCC
AGGCAGCTGAGGTTGGGACCTCTCTCCAGGGCTGATCCTGGGCTGATCAAGGAGGAAGAAGCAG
TGATGTCTGCCTTAGGGGCTGCAGCTCTGTACCTGCATCATCCTGCTGACAGTCACAGTGGCGG
GGTCAGTTTTCTGGGGGCCCAGCTCCCTCCACAGGTGGCAGCAATGGCCCGGCTCCTAGAGGAC
CTGGACAGAAGCGTGTTCAGAAAATTACTGAAGCTTGTGGTCAGCAGCCTTCAGGGGGAGAATT
GCCAGGAGGCTGTACAACGCCTTGGTGTCAGTGCCAACCTATCAGAGGAACGGCTGGGTGCCCT
GCTTGCAGGAACACACACATTGCTCCGGCAGGCCCTCCGGCTGCCCCCCACCAGCCTGAAACCT
GATGCCTTTAGGGACCAGCTCCAGGAGCTTGGTATCCCCGAAGACCTGGTTGGAGATTTGGCCA
GTGTGGTATTTGGGGCCCAGCGCCCCTTCCTTGACTCTGTGGCCGGGAAGCAGAGGGCCTGGCT
GCCCCACCTTGCTGACTTTAGGTGGCGGGTAGATGTGGCTATCTCCACAAGTGCCCTGGCCCGA
TCCCTGCAACCAAGTGTCCTGATGCAGCTCAAGCTTTCAGATGGGTCAGCATACCGCTTTGAGG
TCCCCACGGCCAAGTTCCAGGAGCTTCGGTACAGTGTCGCTCTGGTCCTGAAGGAGATAGCAGA
TCTGGAGAAGAAATGTGAGCGCAAACTGCAGGACTGAACCCTCACCCAGCCAGTGTTGCAATCT
GGGAGCAGCTTCTCCTTTCCATGAAGCAGGCTGTCGAGTGAGTGAATGTAAGGATGGAATTTTC
TGTTTAAATGAAGACAGTTGTGCCTTTTTTTCTTACGGAAGTAAAAACAACTATTAAAAACATG
TTTCTGTAGGTGGATGTTAAACTACACACCTGTTCTGTTTATGGCTGTTGGTCTTTGCTGTTGG
GTATGCCCATCTATGGCCAGGTGGAGGTCTAGGGTCCGGGTTATGGCTCTGAAGATACCATGAA
GTTGCATAGCCTCACCTTCTAAAGCACCTGAACTTTCTCTGCTCATTGTTTTTGTAAATCCTGT
ATTTTGGTGTGGGCATTTTCTTTTTTCGCAAACAAAATTTCAGGGCTTTATTATTTTACAGATC
CATTTCTAACTTTAGTGTCATTAAAATGCTAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005395986	(Get FASTA)	NCBI Sequence Viewer
	XP_005395987	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000014013
	ENSCLAP00000014013.1

RefSeq Acc Id:

XP_005395986 ⟸ XM_005395929

- UniProtKB:

A0A8C2VJ05 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSALGAAALYLHHPADSHSGGVSFLGAQLPPQVAAMARLLEDLDRSVFRKLLKLVVSSLQGENC
QEAVQRLGVSANLSEERLGALLAGTHTLLRQALRLPPTSLKPDAFRDQLQELGIPEDLVGDLAS
VVFGAQRPFLDSVAGKQRAWLPHLADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAYRFEV
PTAKFQELRYSVALVLKEIADLEKKCERKLQD

hide sequence

RefSeq Acc Id:

XP_005395987 ⟸ XM_005395930

- UniProtKB:

A0A8C2VJ05 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSALGAAALYLHHPADSHSGGVSFLGAQLPPQVAAMARLLEDLDRSVFRKLLKLVVSSLQGENC
QEAVQRLGVSANLSEERLGALLAGTHTLLRQALRLPPTSLKPDAFRDQLQELGIPEDLVGDLAS
VVFGAQRPFLDSVAGKQRAWLPHLADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAYRFEV
PTAKFQELRYSVALVLKEIADLEKKCERKLQD

hide sequence

Ensembl Acc Id:

ENSCLAP00000014013 ⟸ ENSCLAT00000014170

Protein Domains

COMM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000009682	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000014170	ENTREZGENE
	ENSCLAT00000014170.1	UniProtKB/TrEMBL
InterPro	COMM	UniProtKB/TrEMBL
	COMMD5	UniProtKB/TrEMBL
NCBI Gene	LOC102017841	ENTREZGENE
PANTHER	COMM DOMAIN-CONTAINING PROTEIN 5	UniProtKB/TrEMBL
	PTHR15666	UniProtKB/TrEMBL
Pfam	COMM_domain	UniProtKB/TrEMBL
	COMM_HN	UniProtKB/TrEMBL
PROSITE	COMM	UniProtKB/TrEMBL
UniProt	A0A8C2VJ05	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	Commd5	COMM domain containing 5	LOC102017841	COMM domain-containing protein 5-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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