COMMD5 (COMM domain containing 5)

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Gene: COMMD5 (COMM domain containing 5) Sus scrofa

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Symbol:

COMMD5

Name:

COMM domain containing 5

RGD ID:

13899620

Description:

INVOLVED IN positive regulation of cell growth (ortholog); positive regulation of epithelial cell differentiation (ortholog); proximal tubule morphogenesis (ortholog); FOUND IN nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

COMM domain-containing protein 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	178,093 - 181,190 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	178,527 - 180,842 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	8,465 - 10,782 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of cell growth (ISO)

positive regulation of epithelial cell differentiation (ISO)

proximal tubule morphogenesis (ISO)

Cellular Component

cytosol (IEA)

nucleoplasm (IEA)

nucleus (IBA,ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:30032202

Genomics

Comparative Map Data

COMMD5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	178,093 - 181,190 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	178,527 - 180,842 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	8,465 - 10,782 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COMMD5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	144,837,978 - 144,853,556 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	144,841,042 - 144,853,736 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	146,075,561 - 146,078,941 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	146,046,355 - 146,049,736 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	146,034,168 - 146,049,203	NCBI
Celera	8	142,252,099 - 142,255,480 (-)	NCBI		Celera
Cytogenetic Map	8	q24.3	NCBI
HuRef	8	141,191,401 - 141,194,782 (-)	NCBI		HuRef
CHM1_1	8	146,113,837 - 146,117,218 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	146,011,722 - 146,054,961 (-)	NCBI		T2T-CHM13v2.0

Commd5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	76,784,141 - 76,786,223 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	76,784,110 - 76,785,505 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	76,899,941 - 76,901,297 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	76,899,910 - 76,901,305 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	76,730,371 - 76,731,727 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	76,727,196 - 76,728,552 (+)	NCBI		MGSCv36	mm8
Celera	15	78,394,972 - 78,396,328 (+)	NCBI		Celera
Cytogenetic Map	15	D3	NCBI
cM Map	15	36.28	NCBI

Commd5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	110,502,492 - 110,503,916 (+)	NCBI		GRCr8
mRatBN7.2	7	108,621,766 - 108,623,616 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	108,598,673 - 108,624,764 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	110,364,881 - 110,366,305 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	112,588,466 - 112,589,890 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	112,549,895 - 112,551,319 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	117,963,213 - 117,965,010 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	118,502,676 - 118,504,097 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	7	117,963,740 - 117,964,414 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	118,495,267 - 118,497,078 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	114,949,725 - 114,951,149 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	114,983,954 - 114,985,374 (+)	NCBI
Celera	7	104,970,718 - 104,972,142 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

Commd5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	3,322,253 - 3,324,313 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	3,322,253 - 3,324,313 (-)	NCBI	ChiLan1.0	ChiLan1.0

COMMD5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	162,349,677 - 162,350,841 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	137,881,305 - 137,889,248 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	141,623,725 - 141,627,532 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	144,604,228 - 144,607,656 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	144,604,718 - 144,605,392 (-)	Ensembl	panpan1.1		panPan2

COMMD5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	38,059,170 - 38,060,923 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	38,060,093 - 38,060,767 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	38,019,322 - 38,021,284 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	38,532,633 - 38,534,595 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	38,533,549 - 38,534,223 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	38,224,204 - 38,226,166 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	38,333,055 - 38,335,015 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	38,809,445 - 38,811,407 (+)	NCBI		UU_Cfam_GSD_1.0

Commd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	165,788 - 167,805 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	7,591,783 - 7,594,509 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	7,591,783 - 7,593,904 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COMMD5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	139,053,761 - 139,057,069 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	139,054,225 - 139,054,899 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	783,946 - 787,442 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Commd5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	12,153,120 - 12,155,452 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	12,154,180 - 12,155,452 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in COMMD5
16 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003125430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK231432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU468612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU914810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01088660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000046684 ⟹ ENSSSCP00000040271

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	178,093 - 181,190 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000067517 ⟹ ENSSSCP00000070179

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	175,843 - 180,796 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000102910 ⟹ ENSSSCP00000079809

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	178,529 - 180,823 (-)	Ensembl

RefSeq Acc Id:

XM_003125430 ⟹ XP_003125478

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	178,527 - 180,842 (-)	NCBI

Sequence:

show sequence

CGGGGCCACCCGCCGGTCTAGAGCCGCCCGGAAGTGCCTCCGGGTCGCTTCCGGAAGCCGGGCC
TCCCTGCCGCTCTTTGCTCTGCACCGCTCGCCAGGCACTTGCAGCTGGGAGCTCTCCTCTGGGC
TGGCTGATCAAAGAGCAGGAAGCAGCGATGTCTGCTGTGGGTTCTGCAGCTCCATACCTGCATC
ACCCTGCTGACAGTCACAGTGGCCGGGTGAGTTTCCTGGGGACCCAGCTGCCCCCAGAGGTGGC
ATCCATGCTGCGGCTCCTGGGAGACCTGGACAGGGGCACGTTCAGAAGATTGTTGAAGCTGGTG
GTCAGCAGCCTGCAGGGAGAAGACTGCCGCGAGGCTGTGCAACGCCTCAGGGCTGGTGCAGACC
TGCCTGAGGAGCGACTGGGTGCCCTGATTGCTGGCATACACACCCTGCTCCAGCAGGCCCTCCG
GCTGCCCCCGGCCAGCTTGAAGCCTGATGCCTTCAAGAACCAGCTCCAGGAGCTCTGCATCCCC
CAGGACCTGGTTGTGGACTTGGCCAGTGTGGTGTTTGGGAGCCAGCGGCCTCTCCTTGACTCTG
TGGCCAGGCAGCAAGGAGCCTGGCTGCCCCACGTTGTCGACTTTAGGTGGAGGGTGGACGTGGC
CATCTCCACCAGCGCCCTGACCCGCTCCTTGCAGCCGAGCGTCCTGATGCAGCTGAAGCTTTCG
GATGGATCCGCACACCTCTTCGAGGTCCCCACGGCCAAGTTCCAGGAGCTGAGGTTCGCCGTGG
CCCTGCTCCTGAAAGAGATGGCCGACCTGGAGAAGAGATGCGAGCGCAAACTGCAGGACTAACC
CTCCCCCGCCAGTCCCCTTCTGGTCACCCCGGGGACAGCTGGCTCAGACGCTGTCTCCAGAACG
AAGCCCGGCCCCCACCCTCAGGAGGCCCTCCAGTGAGAGCGTTGGGTGAAACCACATCATTCTC
TAAATGGAGGACATTTCTTTTTTTTGGAAGTAAAGCGACTATGAAAACCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003125478	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000040271.2
	ENSSSCP00000079809
	ENSSSCP00000079809.1
	ENSSSCP00005032702.1
	ENSSSCP00015002870.1
	ENSSSCP00025030226.1
	ENSSSCP00030000723.1
	ENSSSCP00035029609.1
	ENSSSCP00040024797.1
	ENSSSCP00045015097.1
	ENSSSCP00050030909.1
	ENSSSCP00055040143.1
	ENSSSCP00060006176.1
	ENSSSCP00065009122.1
	ENSSSCP00070030432.1

RefSeq Acc Id:

XP_003125478 ⟸ XM_003125430

- UniProtKB:

A0A287A8L0 (UniProtKB/TrEMBL), A0A4X1UP09 (UniProtKB/TrEMBL), A0A5G2RG86 (UniProtKB/TrEMBL), A0A8D1N3S2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSAVGSAAPYLHHPADSHSGRVSFLGTQLPPEVASMLRLLGDLDRGTFRRLLKLVVSSLQGEDC
REAVQRLRAGADLPEERLGALIAGIHTLLQQALRLPPASLKPDAFKNQLQELCIPQDLVVDLAS
VVFGSQRPLLDSVARQQGAWLPHVVDFRWRVDVAISTSALTRSLQPSVLMQLKLSDGSAHLFEV
PTAKFQELRFAVALLLKEMADLEKRCERKLQD

hide sequence

Ensembl Acc Id:

ENSSSCP00000040271 ⟸ ENSSSCT00000046684

Ensembl Acc Id:

ENSSSCP00000070179 ⟸ ENSSSCT00000067517

Ensembl Acc Id:

ENSSSCP00000079809 ⟸ ENSSSCT00000102910

Protein Domains

COMM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000035123	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005033188	UniProtKB/TrEMBL
	ENSSSCG00015005260	UniProtKB/TrEMBL
	ENSSSCG00025051285	UniProtKB/TrEMBL
	ENSSSCG00030001275	UniProtKB/TrEMBL
	ENSSSCG00035054690	UniProtKB/TrEMBL
	ENSSSCG00040044130	UniProtKB/TrEMBL
	ENSSSCG00045012886	UniProtKB/TrEMBL
	ENSSSCG00050052791	UniProtKB/TrEMBL
	ENSSSCG00055025436	UniProtKB/TrEMBL
	ENSSSCG00060012048	UniProtKB/TrEMBL
	ENSSSCG00065016944	UniProtKB/TrEMBL
	ENSSSCG00070018433	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000046684.3	UniProtKB/TrEMBL
	ENSSSCT00000102910	ENTREZGENE
	ENSSSCT00000102910.1	UniProtKB/TrEMBL
	ENSSSCT00005052967.1	UniProtKB/TrEMBL
	ENSSSCT00015007045.1	UniProtKB/TrEMBL
	ENSSSCT00025070061.1	UniProtKB/TrEMBL
	ENSSSCT00030001669.1	UniProtKB/TrEMBL
	ENSSSCT00035072969.1	UniProtKB/TrEMBL
	ENSSSCT00040059152.1	UniProtKB/TrEMBL
	ENSSSCT00045021931.1	UniProtKB/TrEMBL
	ENSSSCT00050071880.1	UniProtKB/TrEMBL
	ENSSSCT00055050240.1	UniProtKB/TrEMBL
	ENSSSCT00060015756.1	UniProtKB/TrEMBL
	ENSSSCT00065022484.1	UniProtKB/TrEMBL
	ENSSSCT00070036394.1	UniProtKB/TrEMBL
InterPro	COMM	UniProtKB/TrEMBL
	COMMD5	UniProtKB/TrEMBL
KEGG Report	ssc:100522132	UniProtKB/TrEMBL
NCBI Gene	COMMD5	ENTREZGENE
PANTHER	COMM DOMAIN-CONTAINING PROTEIN 5	UniProtKB/TrEMBL
	PTHR15666	UniProtKB/TrEMBL
Pfam	COMM_domain	UniProtKB/TrEMBL
	COMM_HN	UniProtKB/TrEMBL
PROSITE	COMM	UniProtKB/TrEMBL
UniProt	A0A287A8L0	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1UP09	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2RG86	ENTREZGENE
	A0A8D1N3S2	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A5G2RG86	UniProtKB/TrEMBL
VGNC ID	VGNC:86889	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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