Commd5 (COMM domain containing 5) - Rat Genome Database

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Gene: Commd5 (COMM domain containing 5) Heterocephalus glaber
Analyze
Symbol: Commd5
Name: COMM domain containing 5
RGD ID: 18908993
Description: INVOLVED IN positive regulation of cell growth (ortholog); positive regulation of epithelial cell differentiation (ortholog); proximal tubule morphogenesis (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: COMM domain-containing protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,153,120 - 12,155,452 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,154,180 - 12,155,452 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Commd5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,153,120 - 12,155,452 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,154,180 - 12,155,452 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
COMMD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,837,978 - 144,853,556 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,841,042 - 144,853,736 (-)EnsemblGRCh38hg38GRCh38
GRCh378146,075,561 - 146,078,941 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368146,046,355 - 146,049,736 (-)NCBINCBI36Build 36hg18NCBI36
Build 348146,034,168 - 146,049,203NCBI
Celera8142,252,099 - 142,255,480 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8141,191,401 - 141,194,782 (-)NCBIHuRef
CHM1_18146,113,837 - 146,117,218 (-)NCBICHM1_1
T2T-CHM13v2.08146,011,722 - 146,054,961 (-)NCBIT2T-CHM13v2.0
Commd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,784,141 - 76,786,223 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,784,110 - 76,785,505 (+)EnsemblGRCm39 Ensembl
GRCm381576,899,941 - 76,901,297 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,899,910 - 76,901,305 (+)EnsemblGRCm38mm10GRCm38
MGSCv371576,730,371 - 76,731,727 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,727,196 - 76,728,552 (+)NCBIMGSCv36mm8
Celera1578,394,972 - 78,396,328 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.28NCBI
Commd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,502,492 - 110,503,916 (+)NCBIGRCr8
mRatBN7.27108,621,766 - 108,623,616 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,598,673 - 108,624,764 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7110,364,881 - 110,366,305 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07112,588,466 - 112,589,890 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07112,549,895 - 112,551,319 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,963,213 - 117,965,010 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7118,502,676 - 118,504,097 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,963,740 - 117,964,414 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07118,495,267 - 118,497,078 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,949,725 - 114,951,149 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,983,954 - 114,985,374 (+)NCBI
Celera7104,970,718 - 104,972,142 (+)NCBICelera
Cytogenetic Map7q34NCBI
Commd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554543,322,253 - 3,324,313 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554543,322,253 - 3,324,313 (-)NCBIChiLan1.0ChiLan1.0
COMMD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27162,349,677 - 162,350,841 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,881,305 - 137,889,248 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08141,623,725 - 141,627,532 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18144,604,228 - 144,607,656 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8144,604,718 - 144,605,392 (-)Ensemblpanpan1.1panPan2
COMMD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11338,059,170 - 38,060,923 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1338,060,093 - 38,060,767 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1338,019,322 - 38,021,284 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,532,633 - 38,534,595 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1338,533,549 - 38,534,223 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11338,224,204 - 38,226,166 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,333,055 - 38,335,015 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,809,445 - 38,811,407 (+)NCBIUU_Cfam_GSD_1.0
Commd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303165,788 - 167,805 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364707,591,783 - 7,594,509 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364707,591,783 - 7,593,904 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COMMD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4178,093 - 181,190 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14178,527 - 180,842 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.248,465 - 10,782 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COMMD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18139,053,761 - 139,057,069 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8139,054,225 - 139,054,899 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666039783,946 - 787,442 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000007711   ⟹   ENSHGLP00000007625
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473512,153,120 - 12,155,452 (+)Ensembl
RefSeq Acc Id: XM_021250012   ⟹   XP_021105671
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473512,154,180 - 12,155,452 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021105671 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16871 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007625
GenBank Protein JAO02757 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021105671   ⟸   XM_021250012
- UniProtKB: G5C5R0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000007625   ⟸   ENSHGLT00000007711


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005532 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007711 ENTREZGENE
InterPro COMM UniProtKB/TrEMBL
  COMMD5 UniProtKB/TrEMBL
KEGG Report hgl:101704611 UniProtKB/TrEMBL
NCBI Gene Commd5 ENTREZGENE
PANTHER COMM DOMAIN-CONTAINING PROTEIN 5 UniProtKB/TrEMBL
  PTHR15666 UniProtKB/TrEMBL
Pfam COMM_domain UniProtKB/TrEMBL
  COMM_HN UniProtKB/TrEMBL
PROSITE COMM UniProtKB/TrEMBL
UniProt G5C5R0 ENTREZGENE, UniProtKB/TrEMBL