Abca7 (ATP binding cassette subfamily A member 7) - Rat Genome Database
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Gene: Abca7 (ATP binding cassette subfamily A member 7) Chinchilla lanigera
Analyze
Symbol: Abca7
Name: ATP binding cassette subfamily A member 7
RGD ID: 8824148
Description: ENCODES a protein that exhibits apolipoprotein A-I receptor activity (ortholog); floppase activity (ortholog); phosphatidylcholine floppase activity (ortholog); INVOLVED IN amyloid-beta clearance by cellular catabolic process (ortholog); amyloid-beta formation (ortholog); apolipoprotein A-I-mediated signaling pathway (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Alzheimer's disease 9 (ortholog); cerebral creatine deficiency syndrome (ortholog); FOUND IN apical plasma membrane (ortholog); cell junction (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ATP-binding cassette sub-family A member 7; ATP-binding cassette, sub-family A (ABC1), member 7
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,815,562 - 6,836,772 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,818,002 - 6,838,177 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References


Genomics

Comparative Map Data
Abca7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,815,562 - 6,836,772 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,818,002 - 6,838,177 (-)NCBIChiLan1.0ChiLan1.0
ABCA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl191,040,101 - 1,065,572 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl191,039,997 - 1,065,572 (+)EnsemblGRCh38hg38GRCh38
GRCh38191,040,107 - 1,065,572 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37191,040,106 - 1,065,571 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37191,040,102 - 1,065,571 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619991,102 - 1,016,571 (+)NCBINCBI36hg18NCBI36
Celera19970,935 - 998,554 (+)NCBI
Cytogenetic Map19p13.3NCBI
HuRef19812,691 - 838,952 (+)NCBIHuRef
CHM1_1191,038,376 - 1,065,164 (+)NCBICHM1_1
Abca7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,832,328 - 79,851,406 (+)NCBIGRCm39mm39
GRCm381079,996,453 - 80,015,572 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,996,494 - 80,015,572 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,460,360 - 79,478,317 (+)NCBIGRCm37mm9NCBIm37
MGSCv361079,400,744 - 79,418,701 (+)NCBImm8
Celera1081,012,422 - 81,030,379 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Abca7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.279,691,452 - 9,711,466 (-)NCBI
Rnor_6.0 Ensembl712,742,433 - 12,762,341 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0712,742,433 - 12,762,423 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0712,912,155 - 12,932,147 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,203,983 - 11,222,960 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1711,203,982 - 11,222,960 (-)NCBI
Celera77,867,206 - 7,885,960 (-)NCBICelera
Cytogenetic Map7q11NCBI
ABCA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1191,016,829 - 1,042,251 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl191,018,095 - 1,042,104 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01962,811 - 77,897 (-)NCBIMhudiblu_PPA_v0panPan3
ABCA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2057,667,706 - 57,677,342 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12057,668,371 - 57,684,111 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Abca7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936588460,308 - 477,382 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,357,211 - 77,375,180 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,357,161 - 77,375,349 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,621,720 - 77,640,442 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233590
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16792,684 - 821,522 (+)NCBI
ChlSab1.1 Ensembl6792,783 - 821,375 (+)Ensembl
Abca7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248287,572,821 - 7,592,428 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017463   ⟹   ENSCLAP00000017294
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554956,815,562 - 6,836,772 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000017464   ⟹   ENSCLAP00000017295
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554956,818,130 - 6,836,772 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000017465   ⟹   ENSCLAP00000017296
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554956,818,130 - 6,836,772 (-)Ensembl
RefSeq Acc Id: XM_013505096   ⟹   XP_013360550
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554956,818,002 - 6,838,177 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505097   ⟹   XP_013360551
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554956,818,002 - 6,838,022 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505098   ⟹   XP_013360552
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554956,818,002 - 6,837,457 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505099   ⟹   XP_013360553
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554956,818,002 - 6,837,457 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505100   ⟹   XP_013360554
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554956,818,002 - 6,837,457 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505101   ⟹   XP_013360555
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554956,818,534 - 6,837,457 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505102   ⟹   XP_013360556
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554956,820,727 - 6,837,457 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_013360550   ⟸   XM_013505096
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013360551   ⟸   XM_013505097
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013360553   ⟸   XM_013505099
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013360552   ⟸   XM_013505098
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013360554   ⟸   XM_013505100
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013360555   ⟸   XM_013505101
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013360556   ⟸   XM_013505102
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSCLAP00000017295   ⟸   ENSCLAT00000017464
RefSeq Acc Id: ENSCLAP00000017296   ⟸   ENSCLAT00000017465
RefSeq Acc Id: ENSCLAP00000017294   ⟸   ENSCLAT00000017463


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011872 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000017294 ENTREZGENE
  ENSCLAP00000017295 ENTREZGENE
Ensembl Transcript ENSCLAT00000017463 ENTREZGENE
  ENSCLAT00000017464 ENTREZGENE
NCBI Gene Abca7 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Abca7  ATP binding cassette subfamily A member 7    ATP-binding cassette, sub-family A (ABC1), member 7  Symbol and/or name change 5135510 APPROVED