Abca7 (ATP-binding cassette, sub-family A member 7) - Rat Genome Database

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Gene: Abca7 (ATP-binding cassette, sub-family A member 7) Mus musculus
Analyze
Symbol: Abca7
Name: ATP-binding cassette, sub-family A member 7
RGD ID: 1552857
MGI Page MGI
Description: Enables apolipoprotein A-I receptor activity and phospholipid transporter activity. Involved in several processes, including learning or memory; positive regulation of transport; and regulation of intracellular signal transduction. Acts upstream of or within phospholipid efflux. Located in several cellular components, including apical plasma membrane; phagocytic cup; and ruffle membrane. Is expressed in several structures, including alimentary system; hemolymphoid system; integumental system; nervous system; and nose. Human ortholog(s) of this gene implicated in Alzheimer's disease 9. Orthologous to human ABCA7 (ATP binding cassette subfamily A member 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Abc5; Abc51; ABCX; ATP-binding cassette sub-family A member 7; ATP-binding cassette, sub-family A (ABC1), member 7
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,832,328 - 79,851,406 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,832,328 - 79,851,406 (+)EnsemblGRCm39 Ensembl
GRCm381079,996,453 - 80,015,572 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,996,494 - 80,015,572 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,460,360 - 79,478,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,400,744 - 79,418,701 (+)NCBIMGSCv36mm8
Celera1081,012,422 - 81,030,379 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Apaf-1 deficiency and neural tube closure defects are found in fog mice. Honarpour N, etal., Proc Natl Acad Sci U S A 2001 Aug 14;98(17):9683-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10708515   PMID:10769753   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11435699   PMID:12466851   PMID:12477932   PMID:12917409   PMID:14610273   PMID:14681479  
PMID:15520449   PMID:15550377   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16445568   PMID:16602821   PMID:16908670   PMID:17142808   PMID:18429932   PMID:18793613   PMID:18799693  
PMID:20495215   PMID:21762915   PMID:21873635   PMID:22403608   PMID:23029339   PMID:23467355   PMID:24194600   PMID:24293640   PMID:26260791   PMID:26749169   PMID:26792809   PMID:27030769  
PMID:27472885   PMID:28091533   PMID:30480241   PMID:31189668   PMID:31690660   PMID:33053529   PMID:34321999   PMID:36007616   PMID:36269859   PMID:38135757   PMID:38355793   PMID:38506634  
PMID:38687251  


Genomics

Comparative Map Data
Abca7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,832,328 - 79,851,406 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,832,328 - 79,851,406 (+)EnsemblGRCm39 Ensembl
GRCm381079,996,453 - 80,015,572 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,996,494 - 80,015,572 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,460,360 - 79,478,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,400,744 - 79,418,701 (+)NCBIMGSCv36mm8
Celera1081,012,422 - 81,030,379 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
ABCA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,040,107 - 1,065,572 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,039,997 - 1,065,572 (+)EnsemblGRCh38hg38GRCh38
GRCh37191,040,106 - 1,065,571 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619991,102 - 1,016,571 (+)NCBINCBI36Build 36hg18NCBI36
Celera19970,935 - 998,554 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef19812,691 - 838,952 (+)NCBIHuRef
CHM1_1191,038,376 - 1,065,164 (+)NCBICHM1_1
T2T-CHM13v2.0191,002,776 - 1,030,237 (+)NCBIT2T-CHM13v2.0
Abca7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,342,092 - 10,362,094 (-)NCBIGRCr8
mRatBN7.279,691,452 - 9,711,466 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,691,449 - 9,711,425 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,573,976 - 12,592,469 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,449,312 - 14,467,805 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,310,438 - 12,328,932 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,742,433 - 12,762,423 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,742,433 - 12,762,341 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,912,155 - 12,932,147 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,203,983 - 11,222,960 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1711,203,982 - 11,222,960 (-)NCBI
Celera77,867,206 - 7,885,960 (-)NCBICelera
Cytogenetic Map7q11NCBI
Abca7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,815,562 - 6,836,772 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,818,002 - 6,838,177 (-)NCBIChiLan1.0ChiLan1.0
ABCA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,374,938 - 5,401,483 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,611,225 - 4,637,922 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01962,811 - 77,897 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1191,016,829 - 1,042,251 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl191,018,095 - 1,042,104 (+)Ensemblpanpan1.1panPan2
ABCA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,668,371 - 57,684,111 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,667,706 - 57,677,342 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,470,691 - 57,486,228 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,410,598 - 58,426,136 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,410,507 - 58,425,315 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,465,893 - 57,481,504 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,945,423 - 57,961,034 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,148,479 - 58,164,018 (-)NCBIUU_Cfam_GSD_1.0
Abca7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,357,348 - 217,374,569 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588461,389 - 477,229 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936588460,308 - 477,382 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,357,218 - 77,375,180 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,357,161 - 77,375,349 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,621,720 - 77,640,442 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233590
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16792,684 - 821,522 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl6792,783 - 821,375 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660818,035,915 - 8,121,412 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abca7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,573,130 - 7,591,038 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248287,572,821 - 7,592,428 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Abca7
557 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:511
Count of miRNA genes:181
Interacting mature miRNAs:194
Transcripts:ENSMUST00000043866, ENSMUST00000132517, ENSMUST00000171637
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse

Markers in Region
BF390650  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381080,011,342 - 80,011,818UniSTSGRCm38
MGSCv371079,474,087 - 79,474,563UniSTSGRCm37
Celera1081,026,149 - 81,026,625UniSTS
Cytogenetic Map10B4-C1UniSTS
Abca7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10B4-C1UniSTS
cM Map1039.72UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001347081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC151846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF213395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF287141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF287142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000043866   ⟹   ENSMUSP00000043090
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,833,449 - 79,851,402 (+)Ensembl
GRCm38.p6 Ensembl1079,997,615 - 80,015,568 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132517   ⟹   ENSMUSP00000115111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,832,328 - 79,851,406 (+)Ensembl
GRCm38.p6 Ensembl1079,996,494 - 80,015,572 (+)Ensembl
Ensembl Acc Id: ENSMUST00000171637   ⟹   ENSMUSP00000128121
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,833,410 - 79,851,387 (+)Ensembl
GRCm38.p6 Ensembl1079,997,576 - 80,015,553 (+)Ensembl
RefSeq Acc Id: NM_001347081   ⟹   NP_001334010
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,832,328 - 79,851,406 (+)NCBI
GRCm381079,996,494 - 80,015,572 (+)NCBI
Sequence:
RefSeq Acc Id: NM_013850   ⟹   NP_038878
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,832,328 - 79,851,406 (+)NCBI
GRCm381079,996,494 - 80,015,572 (+)NCBI
MGSCv371079,460,360 - 79,478,317 (+)RGD
Celera1081,012,422 - 81,030,379 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017313958   ⟹   XP_017169447
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,833,443 - 79,851,400 (+)NCBI
GRCm381079,997,609 - 80,015,572 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936192
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,837,963 - 79,851,406 (+)NCBI
Sequence:
RefSeq Acc Id: NP_038878   ⟸   NM_013850
- Peptide Label: isoform 2
- UniProtKB: Q9JL36 (UniProtKB/Swiss-Prot),   Q91V24 (UniProtKB/Swiss-Prot),   B2RWU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169447   ⟸   XM_017313958
- Peptide Label: isoform X1
- UniProtKB: B2RWU5 (UniProtKB/TrEMBL),   B7ZNA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001334010   ⟸   NM_001347081
- Peptide Label: isoform 1
- UniProtKB: E9Q6G4 (UniProtKB/TrEMBL),   B2RWU5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000115111   ⟸   ENSMUST00000132517
Ensembl Acc Id: ENSMUSP00000128121   ⟸   ENSMUST00000171637
Ensembl Acc Id: ENSMUSP00000043090   ⟸   ENSMUST00000043866
Protein Domains
ABC transporter

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91V24-F1-model_v2 AlphaFold Q91V24 1-2159 view protein structure

Promoters
RGD ID:6818848
Promoter ID:MM_KWN:4810
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000081084
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,458,701 - 79,459,357 (+)MPROMDB
RGD ID:6818846
Promoter ID:MM_KWN:4811
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Lung,   Spleen
Transcripts:NM_013850
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,459,411 - 79,460,712 (+)MPROMDB
RGD ID:6818849
Promoter ID:MM_KWN:4812
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:UC007GBB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,468,916 - 79,469,416 (+)MPROMDB
RGD ID:6818852
Promoter ID:MM_KWN:4813
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:UC007GBC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,473,961 - 79,475,002 (+)MPROMDB
RGD ID:6846677
Promoter ID:MM_ACW:5338
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Lung
Transcripts:ABCA7.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,476,211 - 79,476,967 (+)MPROMDB
RGD ID:8672590
Promoter ID:EPDNEW_M14326
Type:multiple initiation site
Name:Abca7_1
Description:Mus musculus ATP-binding cassette, sub-family A , member 7 ,transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381079,997,586 - 79,997,646EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1351646 AgrOrtholog
Ensembl Genes ENSMUSG00000035722 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043866.8 UniProtKB/Swiss-Prot
  ENSMUST00000132517 ENTREZGENE
  ENSMUST00000132517.8 UniProtKB/Swiss-Prot
  ENSMUST00000171637 ENTREZGENE
  ENSMUST00000171637.8 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC2_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABCA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:27403 UniProtKB/Swiss-Prot
MGD MGI:1351646 ENTREZGENE
NCBI Gene 27403 ENTREZGENE
PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE ABCA7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR19229 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ABC2_membrane_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_tran UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Abca7 PhenoGen
PROSITE ABC_TRANSPORTER_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ABCA7_MOUSE UniProtKB/Swiss-Prot
  B2RWU5 ENTREZGENE, UniProtKB/TrEMBL
  B7ZNA4 ENTREZGENE, UniProtKB/TrEMBL
  E9Q6G4 ENTREZGENE, UniProtKB/TrEMBL
  Q8R1I3_MOUSE UniProtKB/TrEMBL
  Q91V24 ENTREZGENE
  Q9JL36 ENTREZGENE
UniProt Secondary Q9JL36 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Abca7  ATP-binding cassette, sub-family A member 7  Abca7  ATP-binding cassette, sub-family A (ABC1), member 7  Symbol and/or name change 5135510 APPROVED