Sacm1l (SAC1 like phosphatidylinositide phosphatase) - Rat Genome Database

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Gene: Sacm1l (SAC1 like phosphatidylinositide phosphatase) Chinchilla lanigera
Analyze
Symbol: Sacm1l
Name: SAC1 like phosphatidylinositide phosphatase
RGD ID: 8817217
Description: ENCODES a protein that exhibits phosphatase activity (ortholog); phosphatidylinositol-3,5-bisphosphate phosphatase activity (ortholog); phosphatidylinositol-3-phosphate phosphatase activity (ortholog); INVOLVED IN exocytic insertion of neurotransmitter receptor to postsynaptic membrane (ortholog); neurotransmitter receptor transport to postsynaptic membrane (ortholog); phosphatidylinositol dephosphorylation (ortholog); ASSOCIATED WITH Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-plasma membrane contact site (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphatidylinositide phosphatase SAC1; SAC1 suppressor of actin mutations 1 like; SAC1 suppressor of actin mutations 1 like (yeast); SAC1 suppressor of actin mutations 1-like (yeast)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,229,840 - 26,280,516 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542026,231,597 - 26,280,516 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sacm1lChinchillaProgressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy  ISORGD:7330128554872ClinVar Annotator: match by term: Microcephaly, progressive, with seizures and cerebral and cerebellar atrophyClinVarPMID:28492532


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sacm1lChinchillaexocytic insertion of neurotransmitter receptor to postsynaptic membrane involved_inISORGD:7354679068941 PMID:32931550SynGOPMID:32931550
Sacm1lChinchillaneurotransmitter receptor transport to postsynaptic membrane involved_inISORGD:692239068941PMID:23838184SynGOPMID:23838184|REF_RGD_ID:13702338
Sacm1lChinchillaphosphatidylinositol dephosphorylation  ISORGD:692239068941 RGDPMID:10887188|REF_RGD_ID:68842
Sacm1lChinchillaphosphatidylinositol dephosphorylation involved_inISORGD:7330129068941 PMID:24209621UniProtPMID:24209621
Sacm1lChinchillavesicle-mediated transport in synapse involved_inISORGD:692239068941PMID:23838184SynGOPMID:23838184|REF_RGD_ID:13702338
Sacm1lChinchillavesicle-mediated transport in synapse involved_inISORGD:7354679068941 PMID:32931550SynGOPMID:32931550

Cellular Component
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sacm1lChinchillaAMPA glutamate receptor complex part_ofISORGD:7354679068941 PMID:22632720MGIPMID:22632720
Sacm1lChinchillaendoplasmic reticulum membrane located_inISORGD:692239068941PMID:10887188UniProtPMID:10887188|REF_RGD_ID:68842
Sacm1lChinchillaendoplasmic reticulum membrane  ISORGD:692239068941 RGDPMID:10887188|REF_RGD_ID:68842
Sacm1lChinchillaendoplasmic reticulum membrane located_inISORGD:7330129068941 PMID:27044890, PMID:29461204, PMID:31806350UniProtPMID:27044890|PMID:29461204|PMID:31806350
Sacm1lChinchillaendoplasmic reticulum-plasma membrane contact site located_inISORGD:692239068941PMID:27044890UniProtPMID:27044890|REF_RGD_ID:25671387
Sacm1lChinchillaendoplasmic reticulum-plasma membrane contact site located_inISORGD:7330129068941 PMID:27044890UniProtPMID:27044890
Sacm1lChinchillaglutamatergic synapse is_active_inISORGD:692239068941PMID:23838184SynGOPMID:23838184|REF_RGD_ID:13702338
Sacm1lChinchillaglutamatergic synapse is_active_inISORGD:7354679068941 PMID:32931550SynGOPMID:32931550
Sacm1lChinchillaGolgi apparatus located_inISORGD:7330129068941 PMID:31806350LIFEdbGO_REF:0000054|PMID:31806350
Sacm1lChinchillaGolgi membrane located_inISORGD:7330129068941 PMID:29461204UniProtPMID:29461204
1 to 10 of 10 rows

Molecular Function
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sacm1lChinchillaphosphatase activity enablesISORGD:692239068941PMID:10887188UniProtPMID:10887188|REF_RGD_ID:68842
Sacm1lChinchillaphosphatidylinositol-3,5-bisphosphate phosphatase activity  ISORGD:692239068941 RGDPMID:10887188|REF_RGD_ID:68842
Sacm1lChinchillaphosphatidylinositol-3-phosphate phosphatase activity  ISORGD:692239068941 RGDPMID:10887188|REF_RGD_ID:68842
Sacm1lChinchillaphosphatidylinositol-4-phosphate phosphatase activity enablesISORGD:7330129068941 PMID:24209621, PMID:27044890, PMID:30659099UniProtPMID:24209621|PMID:27044890|PMID:30659099
Sacm1lChinchillaphosphatidylinositol-4-phosphate phosphatase activity enablesISORGD:7330129068941 PMID:29461204UniProtPMID:29461204
Sacm1lChinchillaphosphatidylinositol-4-phosphate phosphatase activity enablesISORGD:692239068941PMID:27044890UniProtPMID:27044890|REF_RGD_ID:25671387
Sacm1lChinchillaphosphatidylinositol-4-phosphate phosphatase activity  ISORGD:692239068941 RGDPMID:10887188|REF_RGD_ID:68842
Sacm1lChinchillaprotein binding enablesISOUniProtKB:A0A0F6B423|UniProtKB:A0A0F6B5H59068941 PMID:34237247IntActPMID:34237247
Sacm1lChinchillaprotein binding enablesISOUniProtKB:O00590|UniProtKB:O15552|UniProtKB:O95197-3|UniProtKB:P11912|UniProtKB:P30825|UniProtKB:P31513|UniProtKB:Q13520|UniProtKB:Q14973|UniProtKB:Q15125|UniProtKB:Q2M2E3|UniProtKB:Q3KNW5|UniProtKB:Q3SXY8|UniProtKB:Q49AM1|UniProtKB:Q5SR56|UniProtKB:Q5T4F4|UniProtKB:Q6ZMZ0|UniProtKB:Q7Z5P4|UniProtKB:Q8N5M9|UniProtKB:Q8TDT2|UniProtKB:Q8TDV0|UniProtKB:Q96BA8|UniProtKB:Q9BS91|UniProtKB:Q9GZY8-5|UniProtKB:Q9NQQ7-3|UniProtKB:Q9NRX6|UniProtKB:Q9NY72|UniProtKB:Q9Y320|UniProtKB:Q9Y3949068941 PMID:32296183IntActPMID:32296183
Sacm1lChinchillaprotein binding enablesISOUniProtKB:O95486|UniProtKB:Q15436|UniProtKB:Q9NV649068941 PMID:31806350UniProtPMID:31806350
Sacm1lChinchillaprotein binding enablesISOUniProtKB:O95292|UniProtKB:Q9HB20|UniProtKB:Q9P0L09068941 PMID:30659099UniProtPMID:30659099
Sacm1lChinchillaprotein binding enablesISOUniProtKB:Q9Y6789068941 PMID:14527956, PMID:33961781IntActPMID:14527956|PMID:33961781
1 to 12 of 12 rows


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:30032202  



Sacm1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,229,840 - 26,280,516 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542026,231,597 - 26,280,516 (-)NCBIChiLan1.0ChiLan1.0
SACM1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38345,689,396 - 45,745,409 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl345,689,056 - 45,745,412 (+)EnsemblGRCh38hg38GRCh38
GRCh37345,730,888 - 45,786,901 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36345,705,947 - 45,761,905 (+)NCBINCBI36Build 36hg18NCBI36
Build 34345,705,946 - 45,761,904NCBI
Celera345,668,700 - 45,724,522 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef345,775,115 - 45,830,941 (+)NCBIHuRef
CHM1_1345,680,731 - 45,736,559 (+)NCBICHM1_1
T2T-CHM13v2.0345,705,375 - 45,761,083 (+)NCBIT2T-CHM13v2.0
Sacm1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399123,358,818 - 123,421,665 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9123,358,824 - 123,421,665 (+)EnsemblGRCm39 Ensembl
GRCm389123,529,753 - 123,592,600 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9123,529,759 - 123,592,600 (+)EnsemblGRCm38mm10GRCm38
MGSCv379123,439,000 - 123,501,716 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369123,378,580 - 123,441,296 (+)NCBIMGSCv36mm8
Celera9123,982,316 - 124,047,496 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map974.08NCBI
Sacm1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88132,053,465 - 132,109,857 (+)NCBIGRCr8
mRatBN7.28123,176,017 - 123,232,413 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8123,172,536 - 123,232,413 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8128,765,500 - 128,828,247 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08126,964,469 - 127,027,208 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08124,793,995 - 124,856,731 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08132,607,166 - 132,663,502 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8132,607,166 - 132,663,502 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08131,759,866 - 131,816,202 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48128,302,927 - 128,359,950 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18128,322,663 - 128,379,687 (+)NCBI
Celera8122,286,384 - 122,342,572 (+)NCBICelera
Cytogenetic Map8q32NCBI
SACM1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2245,653,967 - 45,709,677 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1345,658,749 - 45,714,444 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0345,596,775 - 45,652,482 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1346,704,539 - 46,760,105 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl346,704,565 - 46,760,104 (+)Ensemblpanpan1.1panPan2
SACM1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12042,731,674 - 42,791,455 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2042,720,249 - 42,791,402 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2042,648,744 - 42,708,307 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02043,216,790 - 43,276,240 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2043,216,794 - 43,276,251 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12042,457,062 - 42,516,486 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02042,864,579 - 42,923,977 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02043,139,544 - 43,199,143 (-)NCBIUU_Cfam_GSD_1.0
Sacm1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118197,843,903 - 197,900,798 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936695196,238 - 253,128 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SACM1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1328,817,132 - 28,891,685 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11328,816,977 - 28,906,503 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21331,719,695 - 31,794,148 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SACM1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1227,159,701 - 7,214,368 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl227,159,809 - 7,214,555 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041159,951,795 - 160,006,471 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sacm1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473075,113,012 - 75,169,561 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473075,107,294 - 75,169,527 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Ensembl Acc Id: ENSCLAT00000020822   ⟹   ENSCLAP00000020624
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542026,229,840 - 26,280,516 (-)Ensembl
RefSeq Acc Id: XM_005383470   ⟹   XP_005383527
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542026,231,597 - 26,280,516 (-)NCBI
Sequence:
Protein RefSeqs XP_005383527 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020624
  ENSCLAP00000020624.1
RefSeq Acc Id: XP_005383527   ⟸   XM_005383470
- UniProtKB: A0A8C2W1M9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000020624   ⟸   ENSCLAT00000020822
SAC



1 to 10 of 10 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000014127 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020822 ENTREZGENE
  ENSCLAT00000020822.1 UniProtKB/TrEMBL
InterPro SAC_dom UniProtKB/TrEMBL
NCBI Gene Sacm1l ENTREZGENE
PANTHER PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 UniProtKB/TrEMBL
  PHOSPHATIDYLINOSITOL-3-PHOSPHATASE SAC1 UniProtKB/TrEMBL
Pfam Syja_N UniProtKB/TrEMBL
PROSITE SAC UniProtKB/TrEMBL
UniProt A0A8C2W1M9 ENTREZGENE, UniProtKB/TrEMBL
1 to 10 of 10 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-06 Sacm1l  SAC1 like phosphatidylinositide phosphatase    SAC1 suppressor of actin mutations 1 like (yeast)  Symbol and/or name change 5135510 APPROVED
2017-02-28 Sacm1l  SAC1 suppressor of actin mutations 1 like (yeast)    SAC1 suppressor of actin mutations 1-like (yeast)  Symbol and/or name change 5135510 APPROVED