Acox1 (acyl-CoA oxidase 1) - Rat Genome Database

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Gene: Acox1 (acyl-CoA oxidase 1) Chinchilla lanigera
Analyze
Symbol: Acox1
Name: acyl-CoA oxidase 1
RGD ID: 8793820
Description: ENCODES a protein that exhibits acyl-CoA oxidase activity (ortholog); FAD binding (ortholog); fatty acid binding (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); fatty acid beta-oxidation using acyl-CoA oxidase (ortholog); fatty acid catabolic process (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2K (ortholog); Charcot-Marie-Tooth disease recessive intermediate A (ortholog); Charcot-Marie-Tooth Disease Type 4A, Axonal Form (ortholog); FOUND IN cytoplasm (ortholog); peroxisomal membrane (ortholog); peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acyl-CoA oxidase 1, palmitoyl; peroxisomal acyl-coenzyme A oxidase 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,286,648 - 6,312,716 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555066,286,824 - 6,309,764 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Acox1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,286,648 - 6,312,716 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555066,286,824 - 6,309,764 (+)NCBIChiLan1.0ChiLan1.0
ACOX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,941,507 - 75,979,166 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,941,507 - 75,979,177 (-)EnsemblGRCh38hg38GRCh38
GRCh371773,937,588 - 73,975,247 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,449,183 - 71,487,039 (-)NCBINCBI36Build 36hg18NCBI36
Build 341771,453,259 - 71,487,020NCBI
Celera1770,527,638 - 70,565,551 (-)NCBICelera
Cytogenetic Map17q25.1ENTREZGENE
HuRef1769,363,233 - 69,401,119 (-)NCBIHuRef
CHM1_11774,002,525 - 74,040,340 (-)NCBICHM1_1
T2T-CHM13v2.01776,834,659 - 76,872,295 (-)NCBIT2T-CHM13v2.0
Acox1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911116,062,714 - 116,089,605 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11116,062,714 - 116,089,871 (-)EnsemblGRCm39 Ensembl
GRCm3811116,171,883 - 116,199,045 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,171,888 - 116,199,045 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711116,033,202 - 116,060,359 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,987,978 - 116,015,135 (-)NCBIMGSCv36mm8
Celera11127,936,007 - 127,963,704 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.96NCBI
Acox1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,905,083 - 101,930,136 (-)NCBIGRCr8
mRatBN7.210101,406,197 - 101,431,252 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,406,197 - 101,431,232 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10106,470,116 - 106,493,643 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,933,212 - 105,956,739 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,328,652 - 101,352,160 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010104,724,534 - 104,748,003 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,722,958 - 104,748,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010103,537,761 - 103,561,087 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,281,977 - 106,319,382 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110106,294,947 - 106,310,607 (-)NCBI
Celera1099,981,033 - 100,004,515 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
ACOX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,985,727 - 92,022,709 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,810,438 - 96,847,726 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,890,817 - 69,928,342 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,441,856 - 75,479,568 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,445,923 - 75,479,571 (-)Ensemblpanpan1.1panPan2
ACOX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,658,692 - 4,682,667 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,658,090 - 4,679,096 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,338,792 - 5,363,123 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,328,698 - 5,353,076 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,328,746 - 5,392,641 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,368,568 - 5,392,890 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,478,345 - 5,502,565 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,538,510 - 5,562,844 (+)NCBIUU_Cfam_GSD_1.0
Acox1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,272,135 - 5,296,650 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,112,565 - 1,140,228 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365941,115,607 - 1,140,085 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACOX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,439,361 - 5,479,546 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,450,913 - 5,479,550 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,472,406 - 5,484,941 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACOX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,706,009 - 45,745,564 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,706,360 - 45,740,247 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607716,459,017 - 16,498,942 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acox1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248015,846,729 - 5,867,427 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248015,844,824 - 5,867,439 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000024600   ⟹   ENSCLAP00000024365
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555066,286,648 - 6,312,716 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000024601   ⟹   ENSCLAP00000024366
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555066,286,879 - 6,312,716 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000024602   ⟹   ENSCLAP00000024367
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555066,292,089 - 6,312,716 (+)Ensembl
RefSeq Acc Id: XM_005407465   ⟹   XP_005407522
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555066,286,824 - 6,309,764 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407522 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024365
  ENSCLAP00000024365.1
  ENSCLAP00000024366.1
  ENSCLAP00000024367.1
RefSeq Acc Id: XP_005407522   ⟸   XM_005407465
- UniProtKB: A0A8C2W2W3 (UniProtKB/TrEMBL),   A0A8C2W3I7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000024367   ⟸   ENSCLAT00000024602
Ensembl Acc Id: ENSCLAP00000024365   ⟸   ENSCLAT00000024600
Ensembl Acc Id: ENSCLAP00000024366   ⟸   ENSCLAT00000024601

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016733 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024600 ENTREZGENE
  ENSCLAT00000024600.1 UniProtKB/TrEMBL
  ENSCLAT00000024601.1 UniProtKB/TrEMBL
  ENSCLAT00000024602.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.540.10 UniProtKB/TrEMBL
  2.40.110.10 UniProtKB/TrEMBL
  Butyryl-CoA Dehydrogenase, subunit A, domain 3 UniProtKB/TrEMBL
InterPro ACO UniProtKB/TrEMBL
  ACOX_C_alpha1 UniProtKB/TrEMBL
  Acyl-CoA_ox_N UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_mid-dom UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_mid-dom_sf UniProtKB/TrEMBL
  Acyl-CoA_oxidase UniProtKB/TrEMBL
  Acyl-CoA_oxidase_C UniProtKB/TrEMBL
  AcylCo_DH-like_C UniProtKB/TrEMBL
  AcylCoA_DH/ox_N_sf UniProtKB/TrEMBL
  AcylCoA_DH/oxidase_NM_dom UniProtKB/TrEMBL
NCBI Gene Acox1 ENTREZGENE
PANTHER PEROXISOMAL ACYL-COENZYME A OXIDASE 1 UniProtKB/TrEMBL
  PTHR10909 UniProtKB/TrEMBL
Pfam ACOX UniProtKB/TrEMBL
  ACOX_C_alpha1 UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/TrEMBL
  Acyl-CoA_ox_N UniProtKB/TrEMBL
PIRSF Acyl-CoA_oxidase UniProtKB/TrEMBL
Superfamily-SCOP SSF47203 UniProtKB/TrEMBL
  SSF56645 UniProtKB/TrEMBL
UniProt A0A8C2W2W3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W3I7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YUK0_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Acox1  acyl-CoA oxidase 1    acyl-CoA oxidase 1, palmitoyl  Symbol and/or name change 5135510 APPROVED