Dlgap1 (DLG associated protein 1) - Rat Genome Database

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Gene: Dlgap1 (DLG associated protein 1) Chinchilla lanigera
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Symbol: Dlgap1
Name: DLG associated protein 1
RGD ID: 8790610
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); protein-containing complex binding (ortholog); structural constituent of postsynaptic density (ortholog); INVOLVED IN aggresome assembly (ortholog); modulation of chemical synaptic transmission (ortholog); protein localization to synapse (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); Developmental Disease (ortholog); genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog); postsynaptic density, intracellular component (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: discs, large (Drosophila) homolog-associated protein 1; disks large-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554026,451,864 - 7,105,411 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554026,809,126 - 7,105,356 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dlgap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554026,451,864 - 7,105,411 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554026,809,126 - 7,105,356 (+)NCBIChiLan1.0ChiLan1.0
DLGAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38183,496,032 - 4,455,307 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl183,496,032 - 4,455,307 (-)EnsemblGRCh38hg38GRCh38
GRCh37183,496,030 - 4,455,307 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36183,488,837 - 3,870,135 (-)NCBINCBI36Build 36hg18NCBI36
Build 34183,488,836 - 3,870,135NCBI
Celera183,378,465 - 3,763,880 (-)NCBICelera
Cytogenetic Map18p11.31NCBI
HuRef183,460,881 - 4,419,073 (-)NCBIHuRef
CHM1_1183,495,422 - 4,454,644 (-)NCBICHM1_1
T2T-CHM13v2.0183,655,540 - 4,615,578 (-)NCBIT2T-CHM13v2.0
Dlgap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391770,276,068 - 71,128,408 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1770,276,068 - 71,128,408 (+)EnsemblGRCm39 Ensembl
GRCm381769,969,073 - 70,821,413 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1769,969,073 - 70,821,413 (+)EnsemblGRCm38mm10GRCm38
MGSCv371770,774,132 - 71,170,753 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361770,329,694 - 70,724,660 (+)NCBIMGSCv36mm8
Celera1774,693,139 - 75,083,283 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1740.85NCBI
Dlgap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89117,304,144 - 118,173,463 (+)NCBIGRCr8
mRatBN7.29109,857,500 - 110,726,817 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9110,167,448 - 110,726,817 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9118,552,052 - 119,112,749 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09123,681,601 - 124,242,330 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09122,018,001 - 122,578,724 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09118,277,046 - 119,159,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9118,586,179 - 119,158,196 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09118,045,333 - 118,465,513 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.09118,529,341 - 118,613,312 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49109,455,911 - 110,018,738 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19109,665,390 - 110,228,218 (+)NCBI
Celera9107,306,249 - 107,857,474 (+)NCBICelera
Cytogenetic Map9q38NCBI
DLGAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21733,983,009 - 34,944,858 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11819,675,601 - 20,637,449 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0189,816,171 - 10,781,490 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11812,238,808 - 13,091,118 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1812,704,306 - 13,091,118 (+)Ensemblpanpan1.1panPan2
DLGAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1770,082,563 - 70,949,116 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl770,081,885 - 70,406,213 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha769,537,630 - 70,405,158 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0770,141,565 - 71,012,678 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl770,138,396 - 70,467,546 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1769,827,948 - 70,702,420 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0769,847,031 - 70,733,565 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0770,151,371 - 71,022,144 (-)NCBIUU_Cfam_GSD_1.0
Dlgap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494466,447,222 - 67,327,548 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936672731,858 - 1,091,462 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936672610,020 - 1,094,718 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DLGAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6102,642,677 - 103,199,837 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16102,333,088 - 103,199,841 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2696,024,380 - 96,230,412 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DLGAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11862,731,283 - 63,680,849 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1862,730,753 - 63,091,140 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605037,595,779 - 38,546,598 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dlgap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477013,542,680 - 13,841,352 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477013,543,893 - 13,841,213 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000010497   ⟹   ENSCLAP00000010367
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554026,451,864 - 7,105,411 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000010498   ⟹   ENSCLAP00000010368
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554026,451,864 - 7,105,411 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000010499   ⟹   ENSCLAP00000010369
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554026,814,249 - 7,105,411 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000010500   ⟹   ENSCLAP00000010370
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554026,814,820 - 7,105,356 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000010501   ⟹   ENSCLAP00000010371
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554026,846,477 - 7,105,411 (+)Ensembl
RefSeq Acc Id: XM_005372643   ⟹   XP_005372700
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554026,809,126 - 7,105,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372644   ⟹   XP_005372701
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554026,809,126 - 7,105,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372645   ⟹   XP_005372702
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554026,809,126 - 7,105,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372646   ⟹   XP_005372703
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554026,814,398 - 7,105,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372647   ⟹   XP_005372704
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554026,814,820 - 7,105,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517746   ⟹   XP_013373200
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554026,814,820 - 7,105,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517781   ⟹   XP_013373235
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554026,814,820 - 7,105,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517823   ⟹   XP_013373277
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554026,847,058 - 7,105,356 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005372700   ⟸   XM_005372643
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V5A0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005372702   ⟸   XM_005372645
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005372701   ⟸   XM_005372644
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YMW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005372703   ⟸   XM_005372646
- Peptide Label: isoform X4
- UniProtKB: A0A8C2YMW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005372704   ⟸   XM_005372647
- Peptide Label: isoform X8
- UniProtKB: A0A8C2YMW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373200   ⟸   XM_013517746
- Peptide Label: isoform X5
- UniProtKB: A0A8C2YMW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373235   ⟸   XM_013517781
- Peptide Label: isoform X6
- UniProtKB: A0A8C2V5M5 (UniProtKB/TrEMBL),   A0A8C2YMW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373277   ⟸   XM_013517823
- Peptide Label: isoform X7
- UniProtKB: A0A8C2VBM3 (UniProtKB/TrEMBL),   A0A8C2YMW3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000010368   ⟸   ENSCLAT00000010498
Ensembl Acc Id: ENSCLAP00000010369   ⟸   ENSCLAT00000010499
Ensembl Acc Id: ENSCLAP00000010367   ⟸   ENSCLAT00000010497
Ensembl Acc Id: ENSCLAP00000010370   ⟸   ENSCLAT00000010500
Ensembl Acc Id: ENSCLAP00000010371   ⟸   ENSCLAT00000010501


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007165 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010497 ENTREZGENE
  ENSCLAT00000010497.1 UniProtKB/TrEMBL
  ENSCLAT00000010498 ENTREZGENE
  ENSCLAT00000010498.1 UniProtKB/TrEMBL
  ENSCLAT00000010499 ENTREZGENE
  ENSCLAT00000010499.1 UniProtKB/TrEMBL
  ENSCLAT00000010500 ENTREZGENE
  ENSCLAT00000010500.1 UniProtKB/TrEMBL
  ENSCLAT00000010501 ENTREZGENE
  ENSCLAT00000010501.1 UniProtKB/TrEMBL
InterPro SAPAP UniProtKB/TrEMBL
NCBI Gene Dlgap1 ENTREZGENE
PANTHER PTHR12353 UniProtKB/TrEMBL
  PTHR12353:SF7 UniProtKB/TrEMBL
Pfam GKAP UniProtKB/TrEMBL
UniProt A0A8C2V5A0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V5M5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VBM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YMW3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YMW6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Dlgap1  DLG associated protein 1    discs, large (Drosophila) homolog-associated protein 1  Symbol and/or name change 5135510 APPROVED