Dlgap1 (DLG associated protein 1) - Rat Genome Database

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Gene: Dlgap1 (DLG associated protein 1) Rattus norvegicus
Analyze
Symbol: Dlgap1
Name: DLG associated protein 1
RGD ID: 620223
Description: Enables protein domain specific binding activity. A structural constituent of postsynaptic density. Involved in several processes, including aggresome assembly; protein localization to synapse; and regulation of proteasomal protein catabolic process. Located in postsynaptic density and postsynaptic membrane. Is active in glutamatergic synapse and postsynaptic density, intracellular component. Orthologous to human DLGAP1 (DLG associated protein 1); PARTICIPATES IN glutamate signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DAP-1; discs large homolog associated protein 1; discs, large (Drosophila) homolog-associated protein 1; disks large-associated protein 1; Gkap; GKAP/SAPAP1; guanylate kinase associated protein; guanylate kinase-associated protein; PSD-95/SAP90-binding protein 1; rGKAP; SAP90/PSD-95-associated protein 1; SAPAP1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29109,857,500 - 110,726,817 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9110,167,448 - 110,726,817 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9118,552,052 - 119,112,749 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.09123,681,601 - 124,242,330 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.09122,018,001 - 122,578,724 (+)NCBIRnor_WKY
Rnor_6.09118,277,046 - 119,159,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9118,586,179 - 119,158,196 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09118,045,333 - 118,465,513 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.09118,529,341 - 118,613,312 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49109,455,911 - 110,018,738 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19109,665,390 - 110,228,218 (+)NCBI
Celera9107,306,249 - 107,857,474 (+)NCBICelera
Cytogenetic Map9q38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. The postsynaptic density proteins Homer and Shank form a polymeric network structure. Hayashi MK, etal., Cell. 2009 Apr 3;137(1):159-71. doi: 10.1016/j.cell.2009.01.050.
4. A novel multiple PDZ domain-containing molecule interacting with N-methyl-D-aspartate receptors and neuronal cell adhesion proteins. Hirao K, etal., J Biol Chem 1998 Aug 14;273(33):21105-10.
5. Three isoforms of synaptic scaffolding molecule and their characterization. Multimerization between the isoforms and their interaction with N-methyl-D-aspartate receptors and SAP90/PSD-95-associated protein. Hirao K, etal., J Biol Chem 2000 Jan 28;275(4):2966-72.
6. nArgBP2, a novel neural member of ponsin/ArgBP2/vinexin family that interacts with synapse-associated protein 90/postsynaptic density-95-associated protein (SAPAP). Kawabe H, etal., J Biol Chem 1999 Oct 22;274(43):30914-8.
7. Differential expression of isoforms of PSD-95 binding protein (GKAP/SAPAP1) during rat brain development. Kawashima N, etal., FEBS Lett 1997 Dec 1;418(3):301-4.
8. GKAP, a novel synaptic protein that interacts with the guanylate kinase-like domain of the PSD-95/SAP90 family of channel clustering molecules. Kim E, etal., J Cell Biol 1997 Feb 10;136(3):669-78.
9. Sharpin, a novel postsynaptic density protein that directly interacts with the shank family of proteins. Lim S, etal., Mol Cell Neurosci 2001 Feb;17(2):385-97.
10. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
11. GKAP-DLC2 interaction organizes the postsynaptic scaffold complex to enhance synaptic NMDA receptor activity. Moutin E, etal., J Cell Sci. 2012 Apr 15;125(Pt 8):2030-40. doi: 10.1242/jcs.098160. Epub 2012 Feb 10.
12. Shank, a novel family of postsynaptic density proteins that binds to the NMDA receptor/PSD-95/GKAP complex and cortactin. Naisbitt S, etal., Neuron 1999 Jul;23(3):569-82.
13. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. MPP2 is a postsynaptic MAGUK scaffold protein that links SynCAM1 cell adhesion molecules to core components of the postsynaptic density. Rademacher N, etal., Sci Rep. 2016 Oct 19;6:35283. doi: 10.1038/srep35283.
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. A functional role of postsynaptic density-95-guanylate kinase-associated protein complex in regulating Shank assembly and stability to synapses. Romorini S, etal., J Neurosci. 2004 Oct 20;24(42):9391-404.
19. SAPAPs. A family of PSD-95/SAP90-associated proteins localized at postsynaptic density. Takeuchi M, etal., J Biol Chem 1997 May 2;272(18):11943-51.
20. Differential distribution of Shank and GKAP at the postsynaptic density. Tao-Cheng JH, etal., PLoS One. 2015 Mar 16;10(3):e0118750. doi: 10.1371/journal.pone.0118750. eCollection 2015.
21. Synamon, a novel neuronal protein interacting with synapse-associated protein 90/postsynaptic density-95-associated protein. Yao I, etal., J Biol Chem 1999 Sep 24;274(39):27463-6.
Additional References at PubMed
PMID:9286858   PMID:11122378   PMID:12477932   PMID:12626503   PMID:15024750   PMID:15358237   PMID:15384421   PMID:15673434   PMID:15729360   PMID:17114649   PMID:20352094   PMID:21558424  
PMID:22761992   PMID:22871113   PMID:23143515   PMID:25005096   PMID:29476059   PMID:30053369  


Genomics

Comparative Map Data
Dlgap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29109,857,500 - 110,726,817 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9110,167,448 - 110,726,817 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9118,552,052 - 119,112,749 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.09123,681,601 - 124,242,330 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.09122,018,001 - 122,578,724 (+)NCBIRnor_WKY
Rnor_6.09118,277,046 - 119,159,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9118,586,179 - 119,158,196 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09118,045,333 - 118,465,513 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.09118,529,341 - 118,613,312 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49109,455,911 - 110,018,738 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19109,665,390 - 110,228,218 (+)NCBI
Celera9107,306,249 - 107,857,474 (+)NCBICelera
Cytogenetic Map9q38NCBI
DLGAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38183,496,032 - 4,455,307 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl183,496,032 - 4,455,307 (-)EnsemblGRCh38hg38GRCh38
GRCh37183,496,030 - 4,455,307 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36183,488,837 - 3,870,135 (-)NCBINCBI36Build 36hg18NCBI36
Build 34183,488,836 - 3,870,135NCBI
Celera183,378,465 - 3,763,880 (-)NCBICelera
Cytogenetic Map18p11.31NCBI
HuRef183,460,881 - 4,419,073 (-)NCBIHuRef
CHM1_1183,495,422 - 4,454,644 (-)NCBICHM1_1
T2T-CHM13v2.0183,655,540 - 4,615,578 (-)NCBIT2T-CHM13v2.0
Dlgap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391770,276,068 - 71,128,408 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1770,276,068 - 71,128,408 (+)EnsemblGRCm39 Ensembl
GRCm381769,969,073 - 70,821,413 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1769,969,073 - 70,821,413 (+)EnsemblGRCm38mm10GRCm38
MGSCv371770,774,132 - 71,170,753 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361770,329,694 - 70,724,660 (+)NCBIMGSCv36mm8
Celera1774,693,139 - 75,083,283 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1740.85NCBI
Dlgap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554026,451,864 - 7,105,411 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554026,809,126 - 7,105,356 (+)NCBIChiLan1.0ChiLan1.0
DLGAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11812,238,808 - 13,091,118 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1812,704,306 - 13,091,118 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0189,816,171 - 10,781,490 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
DLGAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1770,082,563 - 70,949,116 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl770,081,885 - 70,406,213 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha769,537,630 - 70,405,158 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0770,141,565 - 71,012,678 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl770,138,396 - 70,467,546 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1769,827,948 - 70,702,420 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0769,847,031 - 70,733,565 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0770,151,371 - 71,022,144 (-)NCBIUU_Cfam_GSD_1.0
Dlgap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494466,447,222 - 67,327,548 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936672731,858 - 1,091,462 (+)EnsemblSpeTri2.0
SpeTri2.0NW_004936672610,020 - 1,094,718 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DLGAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6102,642,677 - 103,199,837 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16102,333,088 - 103,199,841 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2696,024,380 - 96,230,412 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DLGAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11862,731,283 - 63,680,849 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1862,730,753 - 63,091,140 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605037,595,779 - 38,546,598 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dlgap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477013,542,680 - 13,841,352 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477013,543,893 - 13,841,213 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dlgap1
3480 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:611
Count of miRNA genes:259
Interacting mature miRNAs:333
Transcripts:ENSRNOT00000022351
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat

Markers in Region
D9Rat48  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29110,199,119 - 110,199,326 (+)MAPPERmRatBN7.2
Rnor_6.09118,618,200 - 118,618,406NCBIRnor6.0
Rnor_5.09118,077,347 - 118,077,553UniSTSRnor5.0
RGSC_v3.49109,487,385 - 109,487,789RGDRGSC3.4
RGSC_v3.49109,487,520 - 109,487,726UniSTSRGSC3.4
RGSC_v3.19109,697,000 - 109,697,206RGD
Celera9107,337,779 - 107,338,559UniSTS
RH 3.4 Map9867.8RGD
RH 3.4 Map9867.8UniSTS
RH 2.0 Map91037.6RGD
FHH x ACI Map985.77RGD
Cytogenetic Map9q38UniSTS
D9Got127  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29110,235,618 - 110,235,790 (+)MAPPERmRatBN7.2
Rnor_6.09118,660,970 - 118,661,141NCBIRnor6.0
Rnor_5.09118,111,914 - 118,112,085UniSTSRnor5.0
RGSC_v3.49109,524,903 - 109,525,074RGDRGSC3.4
RGSC_v3.49109,524,903 - 109,525,074UniSTSRGSC3.4
RGSC_v3.19109,734,383 - 109,734,554RGD
Celera9107,372,841 - 107,373,012UniSTS
RH 3.4 Map9869.2RGD
RH 3.4 Map9869.2UniSTS
RH 2.0 Map91039.2RGD
Cytogenetic Map9q38UniSTS
D9Got220  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29110,235,676 - 110,235,757 (+)MAPPERmRatBN7.2
Rnor_6.09118,661,028 - 118,661,108NCBIRnor6.0
Rnor_5.09118,111,972 - 118,112,052UniSTSRnor5.0
RGSC_v3.49109,524,961 - 109,525,041UniSTSRGSC3.4
Celera9107,372,899 - 107,372,979UniSTS
Cytogenetic Map9q38UniSTS
RH142992  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29110,658,044 - 110,658,154 (+)MAPPERmRatBN7.2
Rnor_6.09119,091,046 - 119,091,155NCBIRnor6.0
Rnor_5.09118,546,456 - 118,546,565UniSTSRnor5.0
RGSC_v3.49109,951,078 - 109,951,187UniSTSRGSC3.4
Celera9107,788,817 - 107,788,926UniSTS
RH 3.4 Map9867.7UniSTS
Cytogenetic Map9q38UniSTS
RH144687  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29110,694,367 - 110,694,521 (+)MAPPERmRatBN7.2
Rnor_6.09119,127,365 - 119,127,518NCBIRnor6.0
Rnor_5.09118,583,113 - 118,583,266UniSTSRnor5.0
RGSC_v3.49109,987,425 - 109,987,578UniSTSRGSC3.4
Celera9107,825,124 - 107,825,277UniSTS
RH 3.4 Map9869.3UniSTS
Cytogenetic Map9q38UniSTS
BF388187  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29110,300,683 - 110,300,875 (+)MAPPERmRatBN7.2
Rnor_6.09118,727,072 - 118,727,263NCBIRnor6.0
Rnor_5.09118,177,723 - 118,177,914UniSTSRnor5.0
RGSC_v3.49109,591,910 - 109,592,101UniSTSRGSC3.4
Celera9107,438,063 - 107,438,254UniSTS
RH 3.4 Map9869.2UniSTS
Cytogenetic Map9q38UniSTS
BE120950  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29110,618,214 - 110,618,392 (+)MAPPERmRatBN7.2
Rnor_6.09119,051,213 - 119,051,390NCBIRnor6.0
Rnor_5.09118,495,765 - 118,495,942UniSTSRnor5.0
RGSC_v3.49109,911,243 - 109,911,420UniSTSRGSC3.4
Celera9107,754,396 - 107,754,573UniSTS
RH 3.4 Map9869.2UniSTS
Cytogenetic Map9q38UniSTS
RH138004  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29110,720,952 - 110,721,126 (+)MAPPERmRatBN7.2
Rnor_6.09119,153,943 - 119,154,116NCBIRnor6.0
Rnor_5.09118,609,691 - 118,609,864UniSTSRnor5.0
RGSC_v3.49110,015,117 - 110,015,290UniSTSRGSC3.4
Celera9107,851,610 - 107,851,783UniSTS
RH 3.4 Map9868.4UniSTS
Cytogenetic Map9q38UniSTS
RH138110  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29110,724,913 - 110,725,051 (+)MAPPERmRatBN7.2
Rnor_6.09119,157,904 - 119,158,041NCBIRnor6.0
Rnor_5.09118,613,652 - 118,613,789UniSTSRnor5.0
RGSC_v3.49110,019,078 - 110,019,215UniSTSRGSC3.4
Celera9107,855,571 - 107,855,708UniSTS
RH 3.4 Map9868.2UniSTS
Cytogenetic Map9q38UniSTS
RH139942  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29110,659,291 - 110,659,473 (+)MAPPERmRatBN7.2
Rnor_6.09119,092,293 - 119,092,474NCBIRnor6.0
Rnor_5.09118,547,703 - 118,547,884UniSTSRnor5.0
RGSC_v3.49109,952,325 - 109,952,506UniSTSRGSC3.4
Celera9107,790,064 - 107,790,245UniSTS
RH 3.4 Map9868.7UniSTS
Cytogenetic Map9q38UniSTS
BE119986  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29110,681,429 - 110,681,585 (+)MAPPERmRatBN7.2
Rnor_6.09119,114,457 - 119,114,612NCBIRnor6.0
Rnor_5.09118,569,867 - 118,570,022UniSTSRnor5.0
RGSC_v3.49109,974,489 - 109,974,644UniSTSRGSC3.4
Celera9107,812,228 - 107,812,383UniSTS
RH 3.4 Map9853.6UniSTS
Cytogenetic Map9q38UniSTS
G47017  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29110,324,526 - 110,324,709 (+)MAPPERmRatBN7.2
Rnor_6.09118,751,061 - 118,751,243NCBIRnor6.0
Rnor_5.09118,201,712 - 118,201,894UniSTSRnor5.0
RGSC_v3.49109,615,753 - 109,615,935UniSTSRGSC3.4
Celera9107,461,893 - 107,462,075UniSTS
Cytogenetic Map9q38UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 60 8 1
Low 1 42 16 8 5 5 14 35 33 10 5
Below cutoff 2 1 33 33 11 33 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001304287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_022946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB003594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB005146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC141200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U67137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U67987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000022351   ⟹   ENSRNOP00000022351
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9110,167,448 - 110,726,817 (+)Ensembl
Rnor_6.0 Ensembl9118,586,179 - 119,157,564 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087592   ⟹   ENSRNOP00000072852
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9110,417,823 - 110,726,817 (+)Ensembl
Rnor_6.0 Ensembl9118,849,302 - 119,156,706 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090512   ⟹   ENSRNOP00000073938
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9110,167,448 - 110,726,817 (+)Ensembl
Rnor_6.0 Ensembl9118,842,787 - 119,158,196 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110426   ⟹   ENSRNOP00000084169
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9110,417,482 - 110,726,817 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119591   ⟹   ENSRNOP00000090776
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9110,455,674 - 110,726,817 (+)Ensembl
RefSeq Acc Id: NM_001304287   ⟹   NP_001291216
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29110,417,823 - 110,726,817 (+)NCBI
Rnor_6.09118,849,186 - 119,159,807 (+)NCBI
Celera9107,555,288 - 107,857,474 (+)NCBI
Sequence:
RefSeq Acc Id: NM_022946   ⟹   NP_075235
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29110,167,448 - 110,726,817 (+)NCBI
Rnor_6.09118,586,186 - 119,159,807 (+)NCBI
Rnor_5.09118,045,333 - 118,465,513 (+)NCBI
Rnor_5.09118,529,341 - 118,613,312 (+)NCBI
RGSC_v3.49109,455,911 - 110,018,738 (+)RGD
Celera9107,306,249 - 107,857,474 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767429   ⟹   XP_008765651
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29110,417,167 - 110,726,817 (+)NCBI
Rnor_6.09118,848,511 - 119,159,807 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767430   ⟹   XP_008765652
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29110,417,640 - 110,726,817 (+)NCBI
Rnor_6.09118,848,962 - 119,159,807 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767432   ⟹   XP_008765654
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29110,455,605 - 110,726,817 (+)NCBI
Rnor_6.09118,885,740 - 119,159,807 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767433   ⟹   XP_008765655
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29110,477,651 - 110,726,817 (+)NCBI
Rnor_6.09118,910,408 - 119,159,807 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596627   ⟹   XP_017452116
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,857,501 - 110,726,817 (+)NCBI
Rnor_6.09118,277,046 - 119,159,807 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596628   ⟹   XP_017452117
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,857,501 - 110,726,817 (+)NCBI
Rnor_6.09118,277,046 - 119,159,807 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596630   ⟹   XP_017452119
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,857,501 - 110,726,817 (+)NCBI
Rnor_6.09118,277,047 - 119,159,807 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596631   ⟹   XP_017452120
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29110,417,640 - 110,726,817 (+)NCBI
Rnor_6.09118,848,963 - 119,159,807 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039084188   ⟹   XP_038940116
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,857,501 - 110,726,817 (+)NCBI
RefSeq Acc Id: XM_039084189   ⟹   XP_038940117
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,857,501 - 110,726,817 (+)NCBI
RefSeq Acc Id: XM_039084190   ⟹   XP_038940118
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,857,500 - 110,726,817 (+)NCBI
RefSeq Acc Id: XM_039084191   ⟹   XP_038940119
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29109,857,501 - 110,726,817 (+)NCBI
RefSeq Acc Id: XM_039084192   ⟹   XP_038940120
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29110,417,161 - 110,726,817 (+)NCBI
RefSeq Acc Id: XM_039084193   ⟹   XP_038940121
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29110,417,638 - 110,726,817 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_075235   ⟸   NM_022946
- Peptide Label: isoform 1
- UniProtKB: G3V849 (UniProtKB/TrEMBL),   A0A0G2K6T7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765651   ⟸   XM_008767429
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008765652   ⟸   XM_008767430
- Peptide Label: isoform X6
- UniProtKB: P97836 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008765654   ⟸   XM_008767432
- Peptide Label: isoform X7
- UniProtKB: P97836 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008765655   ⟸   XM_008767433
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: NP_001291216   ⟸   NM_001304287
- Peptide Label: isoform 2
- UniProtKB: P97836 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017452117   ⟸   XM_017596628
- Peptide Label: isoform X1
- UniProtKB: G3V849 (UniProtKB/TrEMBL),   A0A0G2K6T7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452116   ⟸   XM_017596627
- Peptide Label: isoform X1
- UniProtKB: G3V849 (UniProtKB/TrEMBL),   A0A0G2K6T7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452119   ⟸   XM_017596630
- Peptide Label: isoform X2
- UniProtKB: G3V849 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452120   ⟸   XM_017596631
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSRNOP00000072852   ⟸   ENSRNOT00000087592
RefSeq Acc Id: ENSRNOP00000073938   ⟸   ENSRNOT00000090512
RefSeq Acc Id: ENSRNOP00000022351   ⟸   ENSRNOT00000022351
RefSeq Acc Id: XP_038940118   ⟸   XM_039084190
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038940117   ⟸   XM_039084189
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6T7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940116   ⟸   XM_039084188
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6T7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940119   ⟸   XM_039084191
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038940120   ⟸   XM_039084192
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038940121   ⟸   XM_039084193
- Peptide Label: isoform X11
RefSeq Acc Id: ENSRNOP00000084169   ⟸   ENSRNOT00000110426
RefSeq Acc Id: ENSRNOP00000090776   ⟸   ENSRNOT00000119591

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97836-F1-model_v2 AlphaFold P97836 1-992 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620223 AgrOrtholog
BioCyc Gene G2FUF-26367 BioCyc
Ensembl Genes ENSRNOG00000016196 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000022351 ENTREZGENE
  ENSRNOP00000022351.8 UniProtKB/TrEMBL
  ENSRNOP00000072852 ENTREZGENE
  ENSRNOP00000072852.1 UniProtKB/Swiss-Prot
  ENSRNOP00000073938 ENTREZGENE
  ENSRNOP00000073938.1 UniProtKB/TrEMBL
  ENSRNOP00000084169 ENTREZGENE
  ENSRNOP00000084169.1 UniProtKB/TrEMBL
  ENSRNOP00000090776 ENTREZGENE
  ENSRNOP00000090776.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022351 ENTREZGENE
  ENSRNOT00000022351.8 UniProtKB/TrEMBL
  ENSRNOT00000087592 ENTREZGENE
  ENSRNOT00000087592.2 UniProtKB/Swiss-Prot
  ENSRNOT00000090512 ENTREZGENE
  ENSRNOT00000090512.2 UniProtKB/TrEMBL
  ENSRNOT00000110426 ENTREZGENE
  ENSRNOT00000110426.1 UniProtKB/TrEMBL
  ENSRNOT00000119591 ENTREZGENE
  ENSRNOT00000119591.1 UniProtKB/TrEMBL
InterPro SAPAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:65040 UniProtKB/Swiss-Prot
NCBI Gene 65040 ENTREZGENE
PANTHER PTHR12353 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12353:SF7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GKAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dlgap1 PhenoGen
UniProt A0A0G2K6T7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZYB2_RAT UniProtKB/TrEMBL
  A0A8I6AE66_RAT UniProtKB/TrEMBL
  DLGP1_RAT UniProtKB/Swiss-Prot
  G3V849 ENTREZGENE, UniProtKB/TrEMBL
  P97836 ENTREZGENE
UniProt Secondary O54773 UniProtKB/Swiss-Prot
  P97841 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-01 Dlgap1  DLG associated protein 1  Dlgap1  discs large homolog associated protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-01-27 Dlgap1  discs large homolog associated protein 1  Dlgap1  discs, large (Drosophila) homolog-associated protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Dlgap1  discs, large (Drosophila) homolog-associated protein 1    guanylate kinase associated protein  Name updated 1299863 APPROVED
2002-08-07 Dlgap1  guanylate kinase associated protein      Symbol and Name status set to provisional 70820 PROVISIONAL