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Gene: Nr5a2 (nuclear receptor subfamily 5 group A member 2) Chinchilla lanigera

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Symbol:

Nr5a2

Name:

nuclear receptor subfamily 5 group A member 2

RGD ID:

8784824

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN acinar cell differentiation (ortholog); bile acid metabolic process (ortholog); calcineurin-mediated signaling (ortholog); ASSOCIATED WITH anovulation (ortholog); Chemical and Drug Induced Liver Injury (ortholog); colon cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nuclear receptor subfamily 5, group A, member 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	36,263,184 - 36,415,525 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	36,263,257 - 36,415,494 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nr5a2	Chinchilla	colon cancer		ISO	RGD:68499	9068941	RNA:increased expression:colon (human)	RGD	PMID:28710032\|REF_RGD_ID:153344627
Nr5a2	Chinchilla	hepatitis	treatment	ISO	RGD:68500	9068941		RGD	PMID:28406481\|REF_RGD_ID:14401591

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nr5a2	Chinchilla	gastrointestinal stromal tumor		ISO	RGD:68499	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
Nr5a2	Chinchilla	long QT syndrome		ISO	RGD:68499	8554872	ClinVar Annotator: match by term: Long QT syndrome	ClinVar	PMID:26132555
Nr5a2	Chinchilla	parathyroid carcinoma		ISO	RGD:68499	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532
Nr5a2	Chinchilla	primary ovarian insufficiency		ISO	RGD:68499	8554872	ClinVar Annotator: match by term: Premature ovarian failure	ClinVar	PMID:25741868
Nr5a2	Chinchilla	syndromic microphthalmia 5		ISO	RGD:68499	8554872	ClinVar Annotator: match by term: Anophthalmia-microphthalmia syndrome	ClinVar	PMID:26893459

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nr5a2	Chinchilla	anovulation		ISO	RGD:68499	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:18628394
Nr5a2	Chinchilla	Chemical and Drug Induced Liver Injury		ISO	RGD:68499	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:29515023
Nr5a2	Chinchilla	Dyslipidemias		ISO	RGD:68499	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:29515023
Nr5a2	Chinchilla	Female Infertility		ISO	RGD:68499	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:17409375
Nr5a2	Chinchilla	glucose intolerance		ISO	RGD:68499	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:29515023
Nr5a2	Chinchilla	Hepatomegaly		ISO	RGD:68499	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:29515023
Nr5a2	Chinchilla	metabolic dysfunction-associated steatotic liver disease		ISO	RGD:68499	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:29515023
Nr5a2	Chinchilla	pancreatic cancer		ISO	RGD:68499	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:20101243\|PMID:26098869

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nr5a2	Chinchilla	acinar cell differentiation	acts_upstream_of_or_within	ISO	RGD:68500	9068941	PMID:25063451	MGI	PMID:25063451
Nr5a2	Chinchilla	bile acid metabolic process	acts_upstream_of	ISO	RGD:68500	9068941	PMID:14766742	UniProt	PMID:14766742
Nr5a2	Chinchilla	bile acid metabolic process	acts_upstream_of	ISO	RGD:68499	9068941	PMID:21614002	UniProt	PMID:21614002
Nr5a2	Chinchilla	bile acid metabolic process	acts_upstream_of_or_within	ISO	MGI:3050234	9068941	PMID:15014077	MGI	PMID:15014077
Nr5a2	Chinchilla	bile acid metabolic process	acts_upstream_of	ISO	RGD:68500	9068941	PMID:21614002	UniProt	PMID:21614002
Nr5a2	Chinchilla	calcineurin-mediated signaling		ISO	RGD:68353	9068941		RGD	PMID:25057110\|REF_RGD_ID:12904895
Nr5a2	Chinchilla	cartilage development	involved_in	ISO	RGD:68500	9068941	PMID:36905926	UniProt	PMID:36905926
Nr5a2	Chinchilla	cellular response to leukemia inhibitory factor	acts_upstream_of_or_within	ISO	RGD:68500	9068941	PMID:20439489	MGI	PMID:20439489
Nr5a2	Chinchilla	cholesterol homeostasis	acts_upstream_of_or_within	ISO	MGI:3050234	9068941	PMID:15014077	MGI	PMID:15014077
Nr5a2	Chinchilla	chromatin remodeling	involved_in	ISO	RGD:68500	9068941	PMID:38409506	UniProt	PMID:38409506
Nr5a2	Chinchilla	chromatin remodeling	involved_in	ISO	RGD:68499	9068941	PMID:38409506	UniProt	PMID:38409506
Nr5a2	Chinchilla	chromatin remodeling	involved_in	ISO	RGD:68500	9068941	PMID:37935903, PMID:39361745	UniProt	PMID:37935903\|PMID:39361745
Nr5a2	Chinchilla	embryonic cleavage	involved_in	ISO	RGD:68500	9068941	PMID:15831456	UniProt	PMID:15831456
Nr5a2	Chinchilla	exocrine pancreas development	involved_in	ISO	RGD:68500	9068941	PMID:21852532, PMID:29443959	UniProt	PMID:21852532\|PMID:29443959
Nr5a2	Chinchilla	inner cell mass cell differentiation	involved_in	ISO	RGD:68500	9068941	PMID:38243114, PMID:38386558	UniProt	PMID:38243114\|PMID:38386558
Nr5a2	Chinchilla	morula formation	involved_in	ISO	RGD:68500	9068941	PMID:37935903, PMID:38243114, PMID:38386558, PMID:39361745	UniProt	PMID:37935903\|PMID:38243114\|PMID:38386558\|PMID:39361745
Nr5a2	Chinchilla	negative regulation of chondrocyte differentiation	involved_in	ISO	RGD:68500	9068941	PMID:36905926	UniProt	PMID:36905926
Nr5a2	Chinchilla	negative regulation of inflammatory response	involved_in	ISO	RGD:68500	9068941	PMID:17670946, PMID:29443959, PMID:30305617	UniProt	PMID:17670946\|PMID:29443959\|PMID:30305617
Nr5a2	Chinchilla	neurogenesis	involved_in	ISO	RGD:68500	9068941	PMID:27447294	UniProt	PMID:27447294
Nr5a2	Chinchilla	pancreas morphogenesis	acts_upstream_of_or_within	ISO	RGD:68500	9068941	PMID:25063451	MGI	PMID:25063451
Nr5a2	Chinchilla	positive regulation of DNA-templated transcription	involved_in	ISO	RGD:68499	9068941	PMID:15143342	BHF-UCL	PMID:15143342
Nr5a2	Chinchilla	positive regulation of DNA-templated transcription	involved_in	ISO	RGD:68500	9068941	PMID:30555544	UniProt	PMID:30555544
Nr5a2	Chinchilla	positive regulation of glucocorticoid biosynthetic process	involved_in	ISO	RGD:68500	9068941	PMID:16923850, PMID:17670946	UniProt	PMID:16923850\|PMID:17670946
Nr5a2	Chinchilla	positive regulation of stem cell differentiation	involved_in	ISO	RGD:68500	9068941	PMID:27447294	UniProt	PMID:27447294
Nr5a2	Chinchilla	positive regulation of T cell activation	involved_in	ISO	RGD:68500	9068941	PMID:31328159	UniProt	PMID:31328159
Nr5a2	Chinchilla	positive regulation of T cell anergy	involved_in	ISO	RGD:68500	9068941	PMID:31328159	UniProt	PMID:31328159
Nr5a2	Chinchilla	positive regulation of T cell proliferation	involved_in	ISO	RGD:68500	9068941	PMID:31328159	UniProt	PMID:31328159
Nr5a2	Chinchilla	positive regulation of tendon cell differentiation	involved_in	ISO	RGD:68500	9068941	PMID:36905926	UniProt	PMID:36905926
Nr5a2	Chinchilla	positive regulation of transcription by RNA polymerase II	involved_in	ISO	RGD:68500	9068941	PMID:20937355	BHF-UCL	PMID:20937355
Nr5a2	Chinchilla	positive regulation of transcription by RNA polymerase II	involved_in	ISO	RGD:68499	9068941	PMID:15205472, PMID:27984042	UniProt	PMID:15205472\|PMID:27984042
Nr5a2	Chinchilla	positive regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	ISO	MGI:3528835	9068941	PMID:15831456	MGI	PMID:15831456
Nr5a2	Chinchilla	positive regulation of transcription by RNA polymerase II	involved_in	ISO	RGD:68500	9068941	PMID:12456679	NTNU_SB	PMID:12456679
Nr5a2	Chinchilla	positive regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	ISO	RGD:68500	9068941	PMID:22977234	MGI	PMID:22977234
Nr5a2	Chinchilla	positive regulation of transcription by RNA polymerase II	involved_in	ISO	UniProtKB:P33242	9068941	PMID:19389484	BHF-UCL	PMID:19389484
Nr5a2	Chinchilla	positive regulation of viral genome replication	involved_in	ISO	RGD:68499	9068941	PMID:19264593	BHF-UCL	PMID:19264593
Nr5a2	Chinchilla	primary ovarian follicle growth	involved_in	ISO	RGD:68500	9068941	PMID:33441767	UniProt	PMID:33441767
Nr5a2	Chinchilla	regulation of cell population proliferation	acts_upstream_of_or_within	ISO	MGI:88039	9068941	PMID:15684064	MGI	PMID:15684064
Nr5a2	Chinchilla	regulation of DNA-templated transcription	involved_in	ISO	RGD:68499	9068941	PMID:15723037	UniProt	PMID:15723037
Nr5a2	Chinchilla	Sertoli cell development	involved_in	ISO	RGD:68500	9068941	PMID:35192609	UniProt	PMID:35192609
Nr5a2	Chinchilla	somatic stem cell population maintenance	involved_in	ISO	RGD:68500	9068941	PMID:34397088	UniProt	PMID:34397088
Nr5a2	Chinchilla	spermatogenesis	involved_in	ISO	RGD:68500	9068941	PMID:35192609	UniProt	PMID:35192609
Nr5a2	Chinchilla	zygotic genome activation	involved_in	ISO	RGD:68500	9068941	PMID:36423263	UniProt	PMID:36423263

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nr5a2	Chinchilla	cytoplasm	located_in	ISO	RGD:68499	9068941	PMID:15205472	BHF-UCL	PMID:15205472
Nr5a2	Chinchilla	nucleus	located_in	ISO	RGD:68499	9068941	PMID:15143342, PMID:15205472	BHF-UCL	PMID:15143342\|PMID:15205472
Nr5a2	Chinchilla	nucleus	is_active_in	ISO	RGD:68499	9068941	PMID:28642062	UniProt	PMID:28642062
Nr5a2	Chinchilla	nucleus	located_in	ISO	RGD:68500	9068941	PMID:19796622	MGI	PMID:19796622
Nr5a2	Chinchilla	nucleus	is_active_in	ISO	RGD:68500	9068941	PMID:36423263	UniProt	PMID:36423263
Nr5a2	Chinchilla	nucleus	is_active_in	ISO	RGD:68500	9068941	PMID:33441767	UniProt	PMID:33441767
Nr5a2	Chinchilla	RNA polymerase II transcription regulator complex	part_of	ISO	RGD:68500	9068941	PMID:19389484	BHF-UCL	PMID:19389484

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nr5a2	Chinchilla	chromatin binding	enables	ISO	RGD:68500	9068941	PMID:19389484	BHF-UCL	PMID:19389484
Nr5a2	Chinchilla	DNA binding	enables	ISO	RGD:68499	9068941	PMID:16289203	UniProt	PMID:16289203
Nr5a2	Chinchilla	DNA binding	enables	ISO	RGD:68500	9068941	PMID:15014077, PMID:16912278	MGI	PMID:15014077\|PMID:16912278
Nr5a2	Chinchilla	DNA-binding transcription activator activity, RNA polymerase II-specific	enables	ISO	RGD:68500	9068941	PMID:12456679	NTNU_SB	PMID:12456679
Nr5a2	Chinchilla	DNA-binding transcription factor activity	enables	ISO	RGD:68499	9068941	PMID:15205472, PMID:15723037, PMID:16289203	UniProt	PMID:15205472\|PMID:15723037\|PMID:16289203
Nr5a2	Chinchilla	double-stranded DNA binding		ISO	RGD:68353	9068941		RGD	PMID:8668203\|REF_RGD_ID:68248
Nr5a2	Chinchilla	nuclear receptor activity		ISO	RGD:68353	9068941		RGD	PMID:8668203\|REF_RGD_ID:68248
Nr5a2	Chinchilla	nuclear receptor activity	enables	ISO	RGD:68499	9068941	PMID:15205472, PMID:18410128, PMID:21614002, PMID:22187462, PMID:22504882, PMID:23737522, PMID:26416531, PMID:26553876, PMID:27984042, PMID:32433991, PMID:38409506	UniProt	PMID:15205472\|PMID:18410128\|PMID:21614002\|PMID:22187462\|PMID:22504882\|PMID:23737522\|PMID:26416531\|PMID:26553876\|PMID:27984042\|PMID:32433991\|PMID:38409506
Nr5a2	Chinchilla	nuclear receptor activity	enables	ISO	RGD:68500	9068941	PMID:19015525, PMID:21614002, PMID:27447294, PMID:38409506, PMID:39361745	UniProt	PMID:19015525\|PMID:21614002\|PMID:27447294\|PMID:38409506\|PMID:39361745
Nr5a2	Chinchilla	nuclear receptor activity	enables	ISO	RGD:68500	9068941	PMID:15831456, PMID:34397088, PMID:36423263, PMID:37935903, PMID:38243114, PMID:38386558	UniProt	PMID:15831456\|PMID:34397088\|PMID:36423263\|PMID:37935903\|PMID:38243114\|PMID:38386558
Nr5a2	Chinchilla	phospholipid binding	enables	ISO	RGD:68499	9068941	PMID:15723037	UniProt	PMID:15723037
Nr5a2	Chinchilla	protein binding	enables	ISO	UniProtKB:Q92786	9068941	PMID:15143342, PMID:15205472, PMID:19264593	BHF-UCL	PMID:15143342\|PMID:15205472\|PMID:19264593
Nr5a2	Chinchilla	protein binding	enables	ISO	UniProtKB:Q15466\|UniProtKB:Q15596	9068941	PMID:22504882	IntAct	PMID:22504882
Nr5a2	Chinchilla	protein binding	enables	ISO	UniProtKB:Q6P1K8	9068941	PMID:32296183	IntAct	PMID:32296183
Nr5a2	Chinchilla	protein binding	enables	ISO	UniProtKB:P35222	9068941	PMID:22187462	IntAct	PMID:22187462
Nr5a2	Chinchilla	protein binding	enables	ISO	UniProtKB:O60869	9068941	PMID:12040021	UniProt	PMID:12040021
Nr5a2	Chinchilla	protein binding	enables	ISO	UniProtKB:Q92830	9068941	PMID:17664281	UniProt	PMID:17664281
Nr5a2	Chinchilla	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	ISO	RGD:68500	9068941	PMID:12456679, PMID:15831456, PMID:19389484	BHF-UCL	PMID:12456679\|PMID:15831456\|PMID:19389484
Nr5a2	Chinchilla	sequence-specific DNA binding	enables	ISO	RGD:68499	9068941	PMID:16289203	UniProt	PMID:16289203
Nr5a2	Chinchilla	sequence-specific double-stranded DNA binding	enables	ISO	RGD:68499	9068941	PMID:28473536	ARUK-UCL	PMID:28473536
Nr5a2	Chinchilla	transcription cis-regulatory region binding	enables	ISO	RGD:68499	9068941	PMID:15205472	BHF-UCL	PMID:15205472
Nr5a2	Chinchilla	transcription coregulator binding	enables	ISO	UniProtKB:Q6STE5	9068941	PMID:14701856	UniProt	PMID:14701856

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

PMID:22301074	PMID:30032202

Nr5a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	36,263,184 - 36,415,525 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	36,263,257 - 36,415,494 (+)	NCBI	ChiLan1.0	ChiLan1.0

NR5A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	200,027,710 - 200,177,415 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	200,027,614 - 200,177,420 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	199,996,838 - 200,146,543 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	198,263,393 - 198,413,175 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	196,728,426 - 196,878,205	NCBI
Celera	1	173,119,461 - 173,269,192 (+)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	171,163,369 - 171,312,952 (+)	NCBI		HuRef
CHM1_1	1	201,419,353 - 201,569,071 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	199,284,725 - 199,434,351 (+)	NCBI		T2T-CHM13v2.0

Nr5a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	136,770,300 - 136,888,186 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	136,770,309 - 136,888,186 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	136,842,562 - 136,960,448 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	136,842,571 - 136,960,448 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	138,740,161 - 138,857,025 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	138,660,687 - 138,776,859 (-)	NCBI		MGSCv36	mm8
Celera	1	139,488,247 - 139,612,651 (-)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	59.98	NCBI

Nr5a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	50,865,253 - 50,985,107 (-)	NCBI		GRCr8
mRatBN7.2	13	48,313,634 - 48,433,494 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	48,316,301 - 48,433,326 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	50,924,322 - 51,041,371 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	52,212,210 - 52,329,237 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	49,479,256 - 49,596,284 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	53,750,470 - 53,870,288 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	53,750,473 - 53,870,428 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	58,791,496 - 58,910,967 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	49,931,592 - 50,048,756 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	49,945,671 - 50,062,836 (-)	NCBI
Celera	13	48,623,262 - 48,740,634 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

NR5A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	49,206,752 - 49,357,599 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	49,168,065 - 49,318,860 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	175,625,140 - 175,775,955 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	179,934,573 - 180,083,607 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	179,934,573 - 180,083,607 (+)	Ensembl	panpan1.1		panPan2

NR5A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	2,925,915 - 3,062,118 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	2,927,326 - 3,062,348 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	2,609,186 - 2,746,673 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	2,572,723 - 2,710,945 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	2,575,836 - 2,711,009 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	2,555,273 - 2,692,729 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	2,656,611 - 2,794,291 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	2,688,192 - 2,825,725 (-)	NCBI		UU_Cfam_GSD_1.0

Nr5a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	74,848,490 - 74,960,157 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	4,084,608 - 4,212,854 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	4,084,161 - 4,194,858 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NR5A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	22,715,735 - 22,865,364 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	22,727,865 - 22,866,905 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	27,281,190 - 27,424,774 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NR5A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	29,230,358 - 29,380,617 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	29,233,558 - 29,379,922 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	30,239,494 - 30,260,729 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nr5a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624798	356,953 - 494,877 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005375135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005375136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005375137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005375138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013521988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013521997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01006551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01006552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01006553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01006554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01006555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01014182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000022422 ⟹ ENSCLAP00000022217

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955406	36,263,184 - 36,415,525 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000022423 ⟹ ENSCLAP00000022218

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955406	36,263,184 - 36,415,525 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000022424 ⟹ ENSCLAP00000022219

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955406	36,263,184 - 36,415,525 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000022425 ⟹ ENSCLAP00000022220

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955406	36,271,811 - 36,412,470 (+)	Ensembl

RefSeq Acc Id:

XM_005375135 ⟹ XP_005375192

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955406	36,263,292 - 36,415,494 (+)	NCBI

Sequence:

show sequence

AAGACTTGCTCGTAACTTTCTGAATTCTGATTTTTTTAAAAAAAACTTTTTCTTAACTTTCACTGAGGAAATACAGGTTACTGTAGTCTGATGTTTGCTCCCCAAGGTCACAAAATATGACAAGCAGC
AGTTTTTCTTATGCTCAATGATTTCTACCTTAACCCAAAGGACTGCCTATAATTTCACTAAGAATGTCTTCTTATTCCGATACTGGGGATATACAAGAATCTCTAAAGCGTGGATTTACACCTATTGG
TGCTGGGCTTCCGGAGCGACACCGACCCCCCGTTCCCGCCCGCGGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAAGCCCTAGGACTGGCTCGATCGCATGGGGAACAGGGGCAGATGCCGGAAA
ACATGCAAGTGTCTCAGTTTAAAATGGTGAATTACTCCTATGATGAAGATCTTGAAGAGCTTTGTCCCGTGTGTGGCGATAAAGTGTCTGGGTACCATTATGGGCTCCTCACCTGTGAAAGCTGCAAG
GGATTTTTTAAGCGAACAGTCCAAAACAATAAAAGGTATACATGTATAGAAAACCAGAATTGCCAAATTGACAAAACCCAGAGAAAACGTTGTCCTTACTGTCGATTTCAAAAATGTCTGAGTGTTGG
AATGAAGCTAGAAGCGGTAAGGGCCGACCGAATGCGTGGAGGCAGGAATAAGTTTGGGCCAATGTATAAGAGAGACAGGGCTCTGAAGCAACAGAAAAAAGCCCTCATCCGGGCCAATGGACTTAAGC
TAGAAGCCATGTCTCAGGTGATCCAAGCGATGCCCTCTGACCTGAGCATCTCTGCGATTCAGAACATCCACTCAGCCTCCAAAGGCCTACCTCTGAACCACGCTGCCTTGCCTCCCACAGACTACGAC
AGAAGTCCTTTTGTAACGTCCCCCATTAGCATGACAATGCCACCTCATGGCAGCCTGCAGGGTTACCAAACATATGGCCATTTTCCTAGCCGGGCCATCAAGTCCGAGTACCCAGACCCCTACACCAG
CTCGCCTGAGTCGATCATGGGCTACTCCTATATGGATGGTTACCAGACCAGCTCTCCAGCCAGCATCCCACATCTGATACTGGAACTTTTAAAGTGCGAGCCAGATGAGCCTCAAGTGCAAGCCAAAA
TCATGGCCTATTTGCAGCAAGAGCAGGCGAACCGGAGCAAGCACGAAAAGCTGAGCACGTTCGGGCTCATGTGCAAAATGGCAGACCAAACCCTCTTCTCCATCGTGGAGTGGGCGAGGAGTAGCATC
TTCTTCCGGGAACTGAAGGTTGATGACCAAATGAAGCTGCTTCAGAACTGCTGGAGCGAGCTCTTAATCCTCGACCACATTTACCGACAAGTGGTGCATGGGAAGGAAGGCTCGATCTTCCTGGTTAC
TGGGCAACAAGTGGACTATTCTATAATCGCATCACAAGCTGGCGCCACCCTCAACAACCTCATGAGTCATGCACAGGAGCTAGTGGCAAAACTTCGGTCCCTGCAGCTTGATCAGCGAGAGTTTGTGT
GTCTAAAGTTCTTGGTGCTCTTTAGTTTAGATGTCAAAAACCTTGAGAACTTCCAGCTGGTCGAAGGTGTCCAGGAACAAGTCAACTCGGCCCTGCTGGACTATACACTTTGCAACTACCCGCAGCAA
GCAGAGAAATTCGGGCAGCTACTACGTGGACTACCAGAAATCCGAGCAATTAGCATGCAGGCTGAAGAATACCTCTATTACAAGCACCTGAATGGAGATGTCCCCTATAATAACCTTCTCATCGAAAT
GTTGCATGCCAAAAGAGCTACTCTTCACTGAAATTAAACCTGAAAAATATCACATACTGCTATGCTGTTCACCAGGTGGCTTACACCCTGAGAGTGGTTCGCAAGTCAGGCAACACAGTCATATCCAT
ACTGCTGGTGAAACCATGGGCGGAAGCCGATGAGCAGGACAGTGTGACAGCTGCCTGTGGCCCTTCAGAAATTGGCCAGTGAATTTTTCTGCTGTGAATTGTTAATCAGTTTGTAACCAGACATTGGC
CTAGCCAACTGCCTTATCAATACAGGACTTATTAGTACAAGCAGACTCAAATATAAAGGTTTTTGGCTTAGTTTCGTTTACTAGAGCTGGTCTATGTTGGTTATCAGACAATCTGTCATGTCTGGATA
TTTATATTACAGATCGCGCAATGTTTAGAGTGTGAAGTCAGTTACGCATTGACATTTTCTTACTGTATCAGTGAAATACATATTGTCATGTCAGTTCTTGCCAGAAATTTCTCACCAAAATGGAATTT
TTTTTTCAGTATTTCAATAAATATTGATATGCCCA

hide sequence

RefSeq Acc Id:

XM_005375136 ⟹ XP_005375193

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955406	36,274,159 - 36,415,494 (+)	NCBI

Sequence:

show sequence

CTCCCCCACCCCAGCCCCCGGCCCTACTTACCTCCCTTCTCGCCTTCCCCCTTCTTTCCCAGCG
CCGCACCCTCGGGGCTGGAGCGGGCCGCTCCGGACGCGCGCGGAGTACCGAGGCGGAGAGGGAGGTGCTGGGCTTCCGGAGCGACACCGACCCCCCGTTCCCGCCCGCGGCCGCCTTGTCATGCTGCC
CAAAGTGGAGACGGAAGCCCTAGGACTGGCTCGATCGCATGGGGAACAGGGGCAGATGCCGGAAAACATGCAAGTGTCTCAGTTTAAAATGGTGAATTACTCCTATGATGAAGATCTTGAAGAGCTTT
GTCCCGTGTGTGGCGATAAAGTGTCTGGGTACCATTATGGGCTCCTCACCTGTGAAAGCTGCAAGGGATTTTTTAAGCGAACAGTCCAAAACAATAAAAGGTATACATGTATAGAAAACCAGAATTGC
CAAATTGACAAAACCCAGAGAAAACGTTGTCCTTACTGTCGATTTCAAAAATGTCTGAGTGTTGGAATGAAGCTAGAAGCGGTAAGGGCCGACCGAATGCGTGGAGGCAGGAATAAGTTTGGGCCAAT
GTATAAGAGAGACAGGGCTCTGAAGCAACAGAAAAAAGCCCTCATCCGGGCCAATGGACTTAAGCTAGAAGCCATGTCTCAGGTGATCCAAGCGATGCCCTCTGACCTGAGCATCTCTGCGATTCAGA
ACATCCACTCAGCCTCCAAAGGCCTACCTCTGAACCACGCTGCCTTGCCTCCCACAGACTACGACAGAAGTCCTTTTGTAACGTCCCCCATTAGCATGACAATGCCACCTCATGGCAGCCTGCAGGGT
TACCAAACATATGGCCATTTTCCTAGCCGGGCCATCAAGTCCGAGTACCCAGACCCCTACACCAGCTCGCCTGAGTCGATCATGGGCTACTCCTATATGGATGGTTACCAGACCAGCTCTCCAGCCAG
CATCCCACATCTGATACTGGAACTTTTAAAGTGCGAGCCAGATGAGCCTCAAGTGCAAGCCAAAATCATGGCCTATTTGCAGCAAGAGCAGGCGAACCGGAGCAAGCACGAAAAGCTGAGCACGTTCG
GGCTCATGTGCAAAATGGCAGACCAAACCCTCTTCTCCATCGTGGAGTGGGCGAGGAGTAGCATCTTCTTCCGGGAACTGAAGGTTGATGACCAAATGAAGCTGCTTCAGAACTGCTGGAGCGAGCTC
TTAATCCTCGACCACATTTACCGACAAGTGGTGCATGGGAAGGAAGGCTCGATCTTCCTGGTTACTGGGCAACAAGTGGACTATTCTATAATCGCATCACAAGCTGGCGCCACCCTCAACAACCTCAT
GAGTCATGCACAGGAGCTAGTGGCAAAACTTCGGTCCCTGCAGCTTGATCAGCGAGAGTTTGTGTGTCTAAAGTTCTTGGTGCTCTTTAGTTTAGATGTCAAAAACCTTGAGAACTTCCAGCTGGTCG
AAGGTGTCCAGGAACAAGTCAACTCGGCCCTGCTGGACTATACACTTTGCAACTACCCGCAGCAAGCAGAGAAATTCGGGCAGCTACTACGTGGACTACCAGAAATCCGAGCAATTAGCATGCAGGCT
GAAGAATACCTCTATTACAAGCACCTGAATGGAGATGTCCCCTATAATAACCTTCTCATCGAAATGTTGCATGCCAAAAGAGCTACTCTTCACTGAAATTAAACCTGAAAAATATCACATACTGCTAT
GCTGTTCACCAGGTGGCTTACACCCTGAGAGTGGTTCGCAAGTCAGGCAACACAGTCATATCCATACTGCTGGTGAAACCATGGGCGGAAGCCGATGAGCAGGACAGTGTGACAGCTGCCTGTGGCCC
TTCAGAAATTGGCCAGTGAATTTTTCTGCTGTGAATTGTTAATCAGTTTGTAACCAGACATTGGCCTAGCCAACTGCCTTATCAATACAGGACTTATTAGTACAAGCAGACTCAAATATAAAGGTTTT
TGGCTTAGTTTCGTTTACTAGAGCTGGTCTATGTTGGTTATCAGACAATCTGTCATGTCTGGATATTTATATTACAGATCGCGCAATGTTTAGAGTGTGAAGTCAGTTACGCATTGACATTTTCTTAC
TGTATCAGTGAAATACATATTGTCATGTCAGTTCTTGCCAGAAATTTCTCACCAAAATGGAATTTTTTTTTCAGTATTTCAATAAATATTGATATGCCCA

hide sequence

RefSeq Acc Id:

XM_005375137 ⟹ XP_005375194

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955406	36,270,433 - 36,415,494 (+)	NCBI

Sequence:

show sequence

TCTAGGTTTCTTCAAGGGGCGGAAAAATAGAAACGCGCGGGACGAGAAAGGTGCTGGGCTTCCGGAGCGACACCGACCCCCCGTTCCCGCCCGCGGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGG
AAGCCCTAGGACTGGCTCGATCGCATGGGGAACAGGGGCAGATGCCGGAAAACATGCAAGTGTCTCAGTTTAAAATGGTGAATTACTCCTATGATGAAGATCTTGAAGAGCTTTGTCCCGTGTGTGGC
GATAAAGTGTCTGGGTACCATTATGGGCTCCTCACCTGTGAAAGCTGCAAGGGATTTTTTAAGCGAACAGTCCAAAACAATAAAAGGTATACATGTATAGAAAACCAGAATTGCCAAATTGACAAAAC
CCAGAGAAAACGTTGTCCTTACTGTCGATTTCAAAAATGTCTGAGTGTTGGAATGAAGCTAGAAGCGGTAAGGGCCGACCGAATGCGTGGAGGCAGGAATAAGTTTGGGCCAATGTATAAGAGAGACA
GGGCTCTGAAGCAACAGAAAAAAGCCCTCATCCGGGCCAATGGACTTAAGCTAGAAGCCATGTCTCAGGTGATCCAAGCGATGCCCTCTGACCTGAGCATCTCTGCGATTCAGAACATCCACTCAGCC
TCCAAAGGCCTACCTCTGAACCACGCTGCCTTGCCTCCCACAGACTACGACAGAAGTCCTTTTGTAACGTCCCCCATTAGCATGACAATGCCACCTCATGGCAGCCTGCAGGGTTACCAAACATATGG
CCATTTTCCTAGCCGGGCCATCAAGTCCGAGTACCCAGACCCCTACACCAGCTCGCCTGAGTCGATCATGGGCTACTCCTATATGGATGGTTACCAGACCAGCTCTCCAGCCAGCATCCCACATCTGA
TACTGGAACTTTTAAAGTGCGAGCCAGATGAGCCTCAAGTGCAAGCCAAAATCATGGCCTATTTGCAGCAAGAGCAGGCGAACCGGAGCAAGCACGAAAAGCTGAGCACGTTCGGGCTCATGTGCAAA
ATGGCAGACCAAACCCTCTTCTCCATCGTGGAGTGGGCGAGGAGTAGCATCTTCTTCCGGGAACTGAAGGTTGATGACCAAATGAAGCTGCTTCAGAACTGCTGGAGCGAGCTCTTAATCCTCGACCA
CATTTACCGACAAGTGGTGCATGGGAAGGAAGGCTCGATCTTCCTGGTTACTGGGCAACAAGTGGACTATTCTATAATCGCATCACAAGCTGGCGCCACCCTCAACAACCTCATGAGTCATGCACAGG
AGCTAGTGGCAAAACTTCGGTCCCTGCAGCTTGATCAGCGAGAGTTTGTGTGTCTAAAGTTCTTGGTGCTCTTTAGTTTAGATGTCAAAAACCTTGAGAACTTCCAGCTGGTCGAAGGTGTCCAGGAA
CAAGTCAACTCGGCCCTGCTGGACTATACACTTTGCAACTACCCGCAGCAAGCAGAGAAATTCGGGCAGCTACTACGTGGACTACCAGAAATCCGAGCAATTAGCATGCAGGCTGAAGAATACCTCTA
TTACAAGCACCTGAATGGAGATGTCCCCTATAATAACCTTCTCATCGAAATGTTGCATGCCAAAAGAGCTACTCTTCACTGAAATTAAACCTGAAAAATATCACATACTGCTATGCTGTTCACCAGGT
GGCTTACACCCTGAGAGTGGTTCGCAAGTCAGGCAACACAGTCATATCCATACTGCTGGTGAAACCATGGGCGGAAGCCGATGAGCAGGACAGTGTGACAGCTGCCTGTGGCCCTTCAGAAATTGGCC
AGTGAATTTTTCTGCTGTGAATTGTTAATCAGTTTGTAACCAGACATTGGCCTAGCCAACTGCCTTATCAATACAGGACTTATTAGTACAAGCAGACTCAAATATAAAGGTTTTTGGCTTAGTTTCGT
TTACTAGAGCTGGTCTATGTTGGTTATCAGACAATCTGTCATGTCTGGATATTTATATTACAGATCGCGCAATGTTTAGAGTGTGAAGTCAGTTACGCATTGACATTTTCTTACTGTATCAGTGAAAT
ACATATTGTCATGTCAGTTCTTGCCAGAAATTTCTCACCAAAATGGAATTTTTTTTTCAGTATTTCAATAAATATTGATATGCCCA

hide sequence

RefSeq Acc Id:

XM_005375138 ⟹ XP_005375195

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955406	36,263,292 - 36,415,494 (+)	NCBI

Sequence:

show sequence

AAGACTTGCTCGTAACTTTCTGAATTCTGATTTTTTTAAAAAAAACTTTTTCTTAACTTTCACTGAGGAAATACAGGTTACTGTAGTCTGATGTTTGCTCCCCAAGGTCACAAAATATGACAAGCAGC
AGTTTTTCTTATGCTCAATGATTTCTACCTTAACCCAAAGGACTGCCTATAATTTCACTAAGAATGTCTTCTTATTCCGATACTGGGGATATACAAGAATCTCTAAAGCGTGGATTTACACCTATTGT
GTCTCAGTTTAAAATGGTGAATTACTCCTATGATGAAGATCTTGAAGAGCTTTGTCCCGTGTGTGGCGATAAAGTGTCTGGGTACCATTATGGGCTCCTCACCTGTGAAAGCTGCAAGGGATTTTTTA
AGCGAACAGTCCAAAACAATAAAAGGTATACATGTATAGAAAACCAGAATTGCCAAATTGACAAAACCCAGAGAAAACGTTGTCCTTACTGTCGATTTCAAAAATGTCTGAGTGTTGGAATGAAGCTA
GAAGCGGTAAGGGCCGACCGAATGCGTGGAGGCAGGAATAAGTTTGGGCCAATGTATAAGAGAGACAGGGCTCTGAAGCAACAGAAAAAAGCCCTCATCCGGGCCAATGGACTTAAGCTAGAAGCCAT
GTCTCAGGTGATCCAAGCGATGCCCTCTGACCTGAGCATCTCTGCGATTCAGAACATCCACTCAGCCTCCAAAGGCCTACCTCTGAACCACGCTGCCTTGCCTCCCACAGACTACGACAGAAGTCCTT
TTGTAACGTCCCCCATTAGCATGACAATGCCACCTCATGGCAGCCTGCAGGGTTACCAAACATATGGCCATTTTCCTAGCCGGGCCATCAAGTCCGAGTACCCAGACCCCTACACCAGCTCGCCTGAG
TCGATCATGGGCTACTCCTATATGGATGGTTACCAGACCAGCTCTCCAGCCAGCATCCCACATCTGATACTGGAACTTTTAAAGTGCGAGCCAGATGAGCCTCAAGTGCAAGCCAAAATCATGGCCTA
TTTGCAGCAAGAGCAGGCGAACCGGAGCAAGCACGAAAAGCTGAGCACGTTCGGGCTCATGTGCAAAATGGCAGACCAAACCCTCTTCTCCATCGTGGAGTGGGCGAGGAGTAGCATCTTCTTCCGGG
AACTGAAGGTTGATGACCAAATGAAGCTGCTTCAGAACTGCTGGAGCGAGCTCTTAATCCTCGACCACATTTACCGACAAGTGGTGCATGGGAAGGAAGGCTCGATCTTCCTGGTTACTGGGCAACAA
GTGGACTATTCTATAATCGCATCACAAGCTGGCGCCACCCTCAACAACCTCATGAGTCATGCACAGGAGCTAGTGGCAAAACTTCGGTCCCTGCAGCTTGATCAGCGAGAGTTTGTGTGTCTAAAGTT
CTTGGTGCTCTTTAGTTTAGATGTCAAAAACCTTGAGAACTTCCAGCTGGTCGAAGGTGTCCAGGAACAAGTCAACTCGGCCCTGCTGGACTATACACTTTGCAACTACCCGCAGCAAGCAGAGAAAT
TCGGGCAGCTACTACGTGGACTACCAGAAATCCGAGCAATTAGCATGCAGGCTGAAGAATACCTCTATTACAAGCACCTGAATGGAGATGTCCCCTATAATAACCTTCTCATCGAAATGTTGCATGCC
AAAAGAGCTACTCTTCACTGAAATTAAACCTGAAAAATATCACATACTGCTATGCTGTTCACCAGGTGGCTTACACCCTGAGAGTGGTTCGCAAGTCAGGCAACACAGTCATATCCATACTGCTGGTG
AAACCATGGGCGGAAGCCGATGAGCAGGACAGTGTGACAGCTGCCTGTGGCCCTTCAGAAATTGGCCAGTGAATTTTTCTGCTGTGAATTGTTAATCAGTTTGTAACCAGACATTGGCCTAGCCAACT
GCCTTATCAATACAGGACTTATTAGTACAAGCAGACTCAAATATAAAGGTTTTTGGCTTAGTTTCGTTTACTAGAGCTGGTCTATGTTGGTTATCAGACAATCTGTCATGTCTGGATATTTATATTAC
AGATCGCGCAATGTTTAGAGTGTGAAGTCAGTTACGCATTGACATTTTCTTACTGTATCAGTGAAATACATATTGTCATGTCAGTTCTTGCCAGAAATTTCTCACCAAAATGGAATTTTTTTTTCAGT
ATTTCAATAAATATTGATATGCCCA

hide sequence

RefSeq Acc Id:

XM_013521988 ⟹ XP_013377442

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955406	36,273,969 - 36,415,494 (+)	NCBI

Sequence:

show sequence

TCAGCTGTGAGACCCGGCAGCCTGTTCATCCCCCGCCCCGGGCCGCGGTGCTGGGCTTCCGGAG
CGACACCGACCCCCCGTTCCCGCCCGCGGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAAGCCCTAGGACTGGCTCGATCGCATGGGGAACAGGGGCAGATGCCGGAAAACATGCAAGTGTCTCA
GTTTAAAATGGTGAATTACTCCTATGATGAAGATCTTGAAGAGCTTTGTCCCGTGTGTGGCGATAAAGTGTCTGGGTACCATTATGGGCTCCTCACCTGTGAAAGCTGCAAGGGATTTTTTAAGCGAA
CAGTCCAAAACAATAAAAGGTATACATGTATAGAAAACCAGAATTGCCAAATTGACAAAACCCAGAGAAAACGTTGTCCTTACTGTCGATTTCAAAAATGTCTGAGTGTTGGAATGAAGCTAGAAGCG
GTAAGGGCCGACCGAATGCGTGGAGGCAGGAATAAGTTTGGGCCAATGTATAAGAGAGACAGGGCTCTGAAGCAACAGAAAAAAGCCCTCATCCGGGCCAATGGACTTAAGCTAGAAGCCATGTCTCA
GGTGATCCAAGCGATGCCCTCTGACCTGAGCATCTCTGCGATTCAGAACATCCACTCAGCCTCCAAAGGCCTACCTCTGAACCACGCTGCCTTGCCTCCCACAGACTACGACAGAAGTCCTTTTGTAA
CGTCCCCCATTAGCATGACAATGCCACCTCATGGCAGCCTGCAGGGTTACCAAACATATGGCCATTTTCCTAGCCGGGCCATCAAGTCCGAGTACCCAGACCCCTACACCAGCTCGCCTGAGTCGATC
ATGGGCTACTCCTATATGGATGGTTACCAGACCAGCTCTCCAGCCAGCATCCCACATCTGATACTGGAACTTTTAAAGTGCGAGCCAGATGAGCCTCAAGTGCAAGCCAAAATCATGGCCTATTTGCA
GCAAGAGCAGGCGAACCGGAGCAAGCACGAAAAGCTGAGCACGTTCGGGCTCATGTGCAAAATGGCAGACCAAACCCTCTTCTCCATCGTGGAGTGGGCGAGGAGTAGCATCTTCTTCCGGGAACTGA
AGGTTGATGACCAAATGAAGCTGCTTCAGAACTGCTGGAGCGAGCTCTTAATCCTCGACCACATTTACCGACAAGTGGTGCATGGGAAGGAAGGCTCGATCTTCCTGGTTACTGGGCAACAAGTGGAC
TATTCTATAATCGCATCACAAGCTGGCGCCACCCTCAACAACCTCATGAGTCATGCACAGGAGCTAGTGGCAAAACTTCGGTCCCTGCAGCTTGATCAGCGAGAGTTTGTGTGTCTAAAGTTCTTGGT
GCTCTTTAGTTTAGATGTCAAAAACCTTGAGAACTTCCAGCTGGTCGAAGGTGTCCAGGAACAAGTCAACTCGGCCCTGCTGGACTATACACTTTGCAACTACCCGCAGCAAGCAGAGAAATTCGGGC
AGCTACTACGTGGACTACCAGAAATCCGAGCAATTAGCATGCAGGCTGAAGAATACCTCTATTACAAGCACCTGAATGGAGATGTCCCCTATAATAACCTTCTCATCGAAATGTTGCATGCCAAAAGA
GCTACTCTTCACTGAAATTAAACCTGAAAAATATCACATACTGCTATGCTGTTCACCAGGTGGCTTACACCCTGAGAGTGGTTCGCAAGTCAGGCAACACAGTCATATCCATACTGCTGGTGAAACCA
TGGGCGGAAGCCGATGAGCAGGACAGTGTGACAGCTGCCTGTGGCCCTTCAGAAATTGGCCAGTGAATTTTTCTGCTGTGAATTGTTAATCAGTTTGTAACCAGACATTGGCCTAGCCAACTGCCTTA
TCAATACAGGACTTATTAGTACAAGCAGACTCAAATATAAAGGTTTTTGGCTTAGTTTCGTTTACTAGAGCTGGTCTATGTTGGTTATCAGACAATCTGTCATGTCTGGATATTTATATTACAGATCG
CGCAATGTTTAGAGTGTGAAGTCAGTTACGCATTGACATTTTCTTACTGTATCAGTGAAATACATATTGTCATGTCAGTTCTTGCCAGAAATTTCTCACCAAAATGGAATTTTTTTTTCAGTATTTCA
ATAAATATTGATATGCCCA

hide sequence

RefSeq Acc Id:

XM_013521997 ⟹ XP_013377451

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955406	36,263,257 - 36,415,494 (+)	NCBI

Sequence:

show sequence

GTCACAGATGCTGGAAAAGTGTCTCAGTTTAAAATGGTGAATTACTCCTATGATGAAGATCTTG
AAGAGCTTTGTCCCGTGTGTGGCGATAAAGTGTCTGGGTACCATTATGGGCTCCTCACCTGTGAAAGCTGCAAGGGATTTTTTAAGCGAACAGTCCAAAACAATAAAAGGTATACATGTATAGAAAAC
CAGAATTGCCAAATTGACAAAACCCAGAGAAAACGTTGTCCTTACTGTCGATTTCAAAAATGTCTGAGTGTTGGAATGAAGCTAGAAGCGGTAAGGGCCGACCGAATGCGTGGAGGCAGGAATAAGTT
TGGGCCAATGTATAAGAGAGACAGGGCTCTGAAGCAACAGAAAAAAGCCCTCATCCGGGCCAATGGACTTAAGCTAGAAGCCATGTCTCAGGTGATCCAAGCGATGCCCTCTGACCTGAGCATCTCTG
CGATTCAGAACATCCACTCAGCCTCCAAAGGCCTACCTCTGAACCACGCTGCCTTGCCTCCCACAGACTACGACAGAAGTCCTTTTGTAACGTCCCCCATTAGCATGACAATGCCACCTCATGGCAGC
CTGCAGGGTTACCAAACATATGGCCATTTTCCTAGCCGGGCCATCAAGTCCGAGTACCCAGACCCCTACACCAGCTCGCCTGAGTCGATCATGGGCTACTCCTATATGGATGGTTACCAGACCAGCTC
TCCAGCCAGCATCCCACATCTGATACTGGAACTTTTAAAGTGCGAGCCAGATGAGCCTCAAGTGCAAGCCAAAATCATGGCCTATTTGCAGCAAGAGCAGGCGAACCGGAGCAAGCACGAAAAGCTGA
GCACGTTCGGGCTCATGTGCAAAATGGCAGACCAAACCCTCTTCTCCATCGTGGAGTGGGCGAGGAGTAGCATCTTCTTCCGGGAACTGAAGGTTGATGACCAAATGAAGCTGCTTCAGAACTGCTGG
AGCGAGCTCTTAATCCTCGACCACATTTACCGACAAGTGGTGCATGGGAAGGAAGGCTCGATCTTCCTGGTTACTGGGCAACAAGTGGACTATTCTATAATCGCATCACAAGCTGGCGCCACCCTCAA
CAACCTCATGAGTCATGCACAGGAGCTAGTGGCAAAACTTCGGTCCCTGCAGCTTGATCAGCGAGAGTTTGTGTGTCTAAAGTTCTTGGTGCTCTTTAGTTTAGATGTCAAAAACCTTGAGAACTTCC
AGCTGGTCGAAGGTGTCCAGGAACAAGTCAACTCGGCCCTGCTGGACTATACACTTTGCAACTACCCGCAGCAAGCAGAGAAATTCGGGCAGCTACTACGTGGACTACCAGAAATCCGAGCAATTAGC
ATGCAGGCTGAAGAATACCTCTATTACAAGCACCTGAATGGAGATGTCCCCTATAATAACCTTCTCATCGAAATGTTGCATGCCAAAAGAGCTACTCTTCACTGAAATTAAACCTGAAAAATATCACA
TACTGCTATGCTGTTCACCAGGTGGCTTACACCCTGAGAGTGGTTCGCAAGTCAGGCAACACAGTCATATCCATACTGCTGGTGAAACCATGGGCGGAAGCCGATGAGCAGGACAGTGTGACAGCTGC
CTGTGGCCCTTCAGAAATTGGCCAGTGAATTTTTCTGCTGTGAATTGTTAATCAGTTTGTAACCAGACATTGGCCTAGCCAACTGCCTTATCAATACAGGACTTATTAGTACAAGCAGACTCAAATAT
AAAGGTTTTTGGCTTAGTTTCGTTTACTAGAGCTGGTCTATGTTGGTTATCAGACAATCTGTCATGTCTGGATATTTATATTACAGATCGCGCAATGTTTAGAGTGTGAAGTCAGTTACGCATTGACA
TTTTCTTACTGTATCAGTGAAATACATATTGTCATGTCAGTTCTTGCCAGAAATTTCTCACCAAAATGGAATTTTTTTTTCAGTATTTCAATAAATATTGATATGCCCA

hide sequence


Protein RefSeqs	XP_005375192	(Get FASTA)	NCBI Sequence Viewer
	XP_005375193	(Get FASTA)	NCBI Sequence Viewer
	XP_005375194	(Get FASTA)	NCBI Sequence Viewer
	XP_005375195	(Get FASTA)	NCBI Sequence Viewer
	XP_013377442	(Get FASTA)	NCBI Sequence Viewer
	XP_013377451	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000022217.1
	ENSCLAP00000022218
	ENSCLAP00000022218.1
	ENSCLAP00000022219
	ENSCLAP00000022219.1
	ENSCLAP00000022220
	ENSCLAP00000022220.1

RefSeq Acc Id:	XP_005375192 ⟸ XM_005375135
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YTI8 (UniProtKB/TrEMBL), A0A8C2YTI9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSYSDTGDIQESLKRGFTPIGAGLPERHRPPVPARGRLVMLPKVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNC QIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLSISAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQG YQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDGYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSEL LILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQLDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNSALLDYTLCNYPQQAEKFGQLLRGLPEIRAISMQA EEYLYYKHLNGDVPYNNLLIEMLHAKRATLH hide sequence

RefSeq Acc Id:	XP_005375195 ⟸ XM_005375138
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2VXS5 (UniProtKB/TrEMBL), A0A8C2YTI9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSYSDTGDIQESLKRGFTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFF KRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLSISAIQNIHSASKGLPLNHAALPPTDYDRSP FVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDGYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFR ELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQLDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNSALLDYTLCNYPQQAEK FGQLLRGLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRATLH hide sequence

RefSeq Acc Id:	XP_005375194 ⟸ XM_005375137
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2W5F4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPKVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCE SCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLSISAIQNIHSASKGLPLNHAALPPT DYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDGYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWAR SSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQLDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNSALLDYTLCNY PQQAEKFGQLLRGLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRATLH hide sequence

RefSeq Acc Id:	XP_005375193 ⟸ XM_005375136
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2W5F4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPKVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCE SCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLSISAIQNIHSASKGLPLNHAALPPT DYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDGYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWAR SSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQLDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNSALLDYTLCNY PQQAEKFGQLLRGLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRATLH hide sequence

RefSeq Acc Id:	XP_013377451 ⟸ XM_013521997
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C2W5F4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRK RCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLSISAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFP SRAIKSEYPDPYTSSPESIMGYSYMDGYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYR QVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQLDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNSALLDYTLCNYPQQAEKFGQLLRGLPEIRAISMQAEEYLYYKH LNGDVPYNNLLIEMLHAKRATLH hide sequence

Protein Domains

NR LBD Nuclear receptor

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000015239	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000022422.1	UniProtKB/TrEMBL
	ENSCLAT00000022423	ENTREZGENE
	ENSCLAT00000022423.1	UniProtKB/TrEMBL
	ENSCLAT00000022424	ENTREZGENE
	ENSCLAT00000022424.1	UniProtKB/TrEMBL
	ENSCLAT00000022425	ENTREZGENE
	ENSCLAT00000022425.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.565.10	UniProtKB/TrEMBL
	3.30.50.10	UniProtKB/TrEMBL
InterPro	NHR-like_dom_sf	UniProtKB/TrEMBL
	NR5_fam	UniProtKB/TrEMBL
	Nucl_hrmn_rcpt_lig-bd	UniProtKB/TrEMBL
	Nuclear_hrmn_rcpt	UniProtKB/TrEMBL
	Znf_hrmn_rcpt	UniProtKB/TrEMBL
	Znf_NHR/GATA	UniProtKB/TrEMBL
NCBI Gene	Nr5a2	ENTREZGENE
PANTHER	NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A MEMBER 2	UniProtKB/TrEMBL
	PTHR24086	UniProtKB/TrEMBL
Pfam	Hormone_recep	UniProtKB/TrEMBL
	zf-C4	UniProtKB/TrEMBL
PIRSF	Nuc_orph_FTZ-F1	UniProtKB/TrEMBL
PRINTS	STRDHORMONER	UniProtKB/TrEMBL
	STROIDFINGER	UniProtKB/TrEMBL
PROSITE	NR_LBD	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_1	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_2	UniProtKB/TrEMBL
SMART	HOLI	UniProtKB/TrEMBL
	ZnF_C4	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	SSF48508	UniProtKB/TrEMBL
UniProt	A0A8C2VXS5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2W5F4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2YTI8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2YTI9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Nr5a2	nuclear receptor subfamily 5 group A member 2		nuclear receptor subfamily 5, group A, member 2	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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