Nr5a2 (nuclear receptor subfamily 5 group A member 2) - Rat Genome Database

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Gene: Nr5a2 (nuclear receptor subfamily 5 group A member 2) Heterocephalus glaber
Analyze
Symbol: Nr5a2
Name: nuclear receptor subfamily 5 group A member 2
RGD ID: 18934510
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN acinar cell differentiation (ortholog); bile acid metabolic process (ortholog); calcineurin-mediated signaling (ortholog); ASSOCIATED WITH anovulation (ortholog); Chemical and Drug Induced Liver Injury (ortholog); colon cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624798356,953 - 494,877 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nr5a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624798356,953 - 494,877 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NR5A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381200,027,710 - 200,177,415 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1200,027,614 - 200,177,420 (+)EnsemblGRCh38hg38GRCh38
GRCh371199,996,838 - 200,146,543 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361198,263,393 - 198,413,175 (+)NCBINCBI36Build 36hg18NCBI36
Build 341196,728,426 - 196,878,205NCBI
Celera1173,119,461 - 173,269,192 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1171,163,369 - 171,312,952 (+)NCBIHuRef
CHM1_11201,419,353 - 201,569,071 (+)NCBICHM1_1
T2T-CHM13v2.01199,284,725 - 199,434,351 (+)NCBIT2T-CHM13v2.0
Nr5a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391136,770,300 - 136,888,186 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1136,770,309 - 136,888,186 (-)EnsemblGRCm39 Ensembl
GRCm381136,842,562 - 136,960,448 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1136,842,571 - 136,960,448 (-)EnsemblGRCm38mm10GRCm38
MGSCv371138,740,161 - 138,857,025 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361138,660,687 - 138,776,859 (-)NCBIMGSCv36mm8
Celera1139,488,247 - 139,612,651 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map159.98NCBI
Nr5a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81350,865,253 - 50,985,107 (-)NCBIGRCr8
mRatBN7.21348,313,634 - 48,433,494 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1348,316,301 - 48,433,326 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1350,924,322 - 51,041,371 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01352,212,210 - 52,329,237 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01349,479,256 - 49,596,284 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01353,750,470 - 53,870,288 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1353,750,473 - 53,870,428 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01358,791,496 - 58,910,967 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41349,931,592 - 50,048,756 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11349,945,671 - 50,062,836 (-)NCBI
Celera1348,623,262 - 48,740,634 (-)NCBICelera
Cytogenetic Map13q13NCBI
Nr5a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540636,263,184 - 36,415,525 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540636,263,257 - 36,415,494 (+)NCBIChiLan1.0ChiLan1.0
NR5A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2149,206,752 - 49,357,599 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1149,168,065 - 49,318,860 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01175,625,140 - 175,775,955 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11179,934,573 - 180,083,607 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1179,934,573 - 180,083,607 (+)Ensemblpanpan1.1panPan2
NR5A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.172,925,915 - 3,062,118 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl72,927,326 - 3,062,348 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha72,609,186 - 2,746,673 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.072,572,723 - 2,710,945 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl72,575,836 - 2,711,009 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.172,555,273 - 2,692,729 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.072,656,611 - 2,794,291 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.072,688,192 - 2,825,725 (-)NCBIUU_Cfam_GSD_1.0
Nr5a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934474,848,490 - 74,960,157 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365674,084,608 - 4,212,854 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365674,084,161 - 4,194,858 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR5A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1022,715,735 - 22,865,364 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11022,727,865 - 22,866,905 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21027,281,190 - 27,424,774 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103230356
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12529,230,358 - 29,380,617 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2529,233,558 - 29,379,922 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605530,239,494 - 30,260,729 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004860118   ⟹   XP_004860175
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624798356,953 - 494,876 (-)NCBI
RefSeq Acc Id: XM_004860119   ⟹   XP_004860176
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624798356,962 - 494,873 (-)NCBI
RefSeq Acc Id: XM_004860120   ⟹   XP_004860177
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624798356,962 - 483,861 (-)NCBI
RefSeq Acc Id: XM_004860121   ⟹   XP_004860178
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624798356,962 - 480,628 (-)NCBI
RefSeq Acc Id: XM_021240654   ⟹   XP_021096313
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624798356,962 - 494,877 (-)NCBI
RefSeq Acc Id: XM_021240655   ⟹   XP_021096314
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624798356,962 - 480,378 (-)NCBI
RefSeq Acc Id: XP_004860175   ⟸   XM_004860118
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021096313   ⟸   XM_021240654
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004860176   ⟸   XM_004860119
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004860177   ⟸   XM_004860120
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004860178   ⟸   XM_004860121
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021096314   ⟸   XM_021240655
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004403 ENTREZGENE
Ensembl Transcript ENSHGLT00000006096 ENTREZGENE
NCBI Gene Nr5a2 ENTREZGENE