Dmxl1 (Dmx like 1) - Rat Genome Database

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Gene: Dmxl1 (Dmx like 1) Chinchilla lanigera
Analyze
Symbol: Dmxl1
Name: Dmx like 1
RGD ID: 8762574
Description: ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Dmx-like 1; dmX-like protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540838,705,595 - 38,848,874 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540838,705,489 - 38,850,770 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dmxl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540838,705,595 - 38,848,874 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540838,705,489 - 38,850,770 (+)NCBIChiLan1.0ChiLan1.0
DMXL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385119,071,027 - 119,249,127 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5119,037,772 - 119,249,138 (+)EnsemblGRCh38hg38GRCh38
GRCh375118,406,722 - 118,584,822 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365118,434,983 - 118,612,721 (+)NCBINCBI36Build 36hg18NCBI36
Build 345118,435,083 - 118,612,721NCBI
Celera5114,354,305 - 114,538,495 (+)NCBICelera
Cytogenetic Map5q23.1NCBI
HuRef5113,594,456 - 113,779,935 (+)NCBIHuRef
CHM1_15117,839,648 - 118,017,742 (+)NCBICHM1_1
T2T-CHM13v2.05119,584,012 - 119,769,943 (+)NCBIT2T-CHM13v2.0
Dmxl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391849,965,657 - 50,098,540 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1849,965,737 - 50,098,540 (+)EnsemblGRCm39 Ensembl
GRCm381849,832,590 - 49,965,473 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1849,832,670 - 49,965,473 (+)EnsemblGRCm38mm10GRCm38
MGSCv371849,992,667 - 50,124,739 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361849,958,327 - 50,090,415 (+)NCBIMGSCv36mm8
Celera1851,159,366 - 51,291,703 (+)NCBICelera
Cytogenetic Map18D1NCBI
cM Map1827.12NCBI
Dmxl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81845,179,505 - 45,349,999 (+)NCBIGRCr8
mRatBN7.21842,993,292 - 43,163,457 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1842,993,340 - 43,163,456 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1845,036,322 - 45,206,529 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01845,757,411 - 45,921,796 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01843,542,215 - 43,712,440 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01844,468,762 - 44,644,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1844,468,784 - 44,642,050 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01843,689,005 - 43,866,902 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41844,819,576 - 44,828,508 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11844,857,206 - 44,981,563 (+)NCBI
Celera1841,218,987 - 41,388,761 (+)NCBICelera
Cytogenetic Map18q11NCBI
DMXL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24114,334,243 - 114,525,577 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15112,487,976 - 112,679,240 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05114,443,624 - 114,634,900 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15120,229,732 - 120,420,341 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5120,229,875 - 120,418,440 (+)Ensemblpanpan1.1panPan2
DMXL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1118,435,939 - 8,563,525 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl118,436,322 - 8,561,550 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha119,564,594 - 9,692,262 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0118,522,304 - 8,649,885 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl118,522,766 - 8,649,947 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1118,393,926 - 8,519,212 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0118,449,622 - 8,578,309 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0118,707,210 - 8,835,941 (+)NCBIUU_Cfam_GSD_1.0
Dmxl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213131,454,394 - 131,618,420 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367152,013,722 - 2,179,224 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367152,013,745 - 2,177,418 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DMXL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2123,003,086 - 123,141,060 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12123,003,077 - 123,142,865 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22128,440,506 - 128,543,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DMXL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12322,312,178 - 22,488,151 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2322,312,204 - 22,490,906 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603455,827,070 - 56,008,726 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dmxl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247332,440,068 - 2,610,899 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247332,438,874 - 2,610,987 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000024864   ⟹   ENSCLAP00000024626
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540838,705,595 - 38,848,874 (+)Ensembl
RefSeq Acc Id: XM_005376544   ⟹   XP_005376601
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540838,705,489 - 38,850,770 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506996   ⟹   XP_013362450
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540838,705,489 - 38,850,770 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507007   ⟹   XP_013362461
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540838,705,500 - 38,790,506 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005376601 (Get FASTA)   NCBI Sequence Viewer  
  XP_013362450 (Get FASTA)   NCBI Sequence Viewer  
  XP_013362461 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024626
  ENSCLAP00000024626.1
Reference Protein Sequences
RefSeq Acc Id: XP_005376601   ⟸   XM_005376544
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013362450   ⟸   XM_013506996
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W671 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362461   ⟸   XM_013507007
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000024626   ⟸   ENSCLAT00000024864
Protein Domains
RAVE complex protein Rav1 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016911 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024864 ENTREZGENE
  ENSCLAT00000024864.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Rav1p_C UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Dmxl1 ENTREZGENE
PANTHER DMX-LIKE PROTEIN 1 UniProtKB/TrEMBL
  RABCONNECTIN-RELATED UniProtKB/TrEMBL
Pfam Rav1p_C UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A8C2W671 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Dmxl1  Dmx like 1    Dmx-like 1  Symbol and/or name change 5135510 APPROVED