Dmxl1 (Dmx like 1) - Rat Genome Database

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Gene: Dmxl1 (Dmx like 1) Heterocephalus glaber
Analyze
Symbol: Dmxl1
Name: Dmx like 1
RGD ID: 18920536
Description: INVOLVED IN vacuolar acidification (inferred); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); high grade glioma (ortholog); FOUND IN RAVE complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DmX-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247332,440,068 - 2,610,899 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247332,438,874 - 2,610,987 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
RAVE complex  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dmxl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247332,440,068 - 2,610,899 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247332,438,874 - 2,610,987 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DMXL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385119,071,027 - 119,249,127 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5119,037,772 - 119,249,138 (+)EnsemblGRCh38hg38GRCh38
GRCh375118,406,722 - 118,584,822 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365118,434,983 - 118,612,721 (+)NCBINCBI36Build 36hg18NCBI36
Build 345118,435,083 - 118,612,721NCBI
Celera5114,354,305 - 114,538,495 (+)NCBICelera
Cytogenetic Map5q23.1NCBI
HuRef5113,594,456 - 113,779,935 (+)NCBIHuRef
CHM1_15117,839,648 - 118,017,742 (+)NCBICHM1_1
T2T-CHM13v2.05119,584,012 - 119,769,943 (+)NCBIT2T-CHM13v2.0
Dmxl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391849,965,657 - 50,098,540 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1849,965,737 - 50,098,540 (+)EnsemblGRCm39 Ensembl
GRCm381849,832,590 - 49,965,473 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1849,832,670 - 49,965,473 (+)EnsemblGRCm38mm10GRCm38
MGSCv371849,992,667 - 50,124,739 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361849,958,327 - 50,090,415 (+)NCBIMGSCv36mm8
Celera1851,159,366 - 51,291,703 (+)NCBICelera
Cytogenetic Map18D1NCBI
cM Map1827.12NCBI
Dmxl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81845,179,505 - 45,349,999 (+)NCBIGRCr8
mRatBN7.21842,993,292 - 43,163,457 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1842,993,340 - 43,163,456 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1845,036,322 - 45,206,529 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01845,757,411 - 45,921,796 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01843,542,215 - 43,712,440 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01844,468,762 - 44,644,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1844,468,784 - 44,642,050 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01843,689,005 - 43,866,902 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41844,819,576 - 44,828,508 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11844,857,206 - 44,981,563 (+)NCBI
Celera1841,218,987 - 41,388,761 (+)NCBICelera
Cytogenetic Map18q11NCBI
Dmxl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540838,705,595 - 38,848,874 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540838,705,489 - 38,850,770 (+)NCBIChiLan1.0ChiLan1.0
DMXL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24114,334,243 - 114,525,577 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15112,487,976 - 112,679,240 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05114,443,624 - 114,634,900 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15120,229,732 - 120,420,341 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5120,229,875 - 120,418,440 (+)Ensemblpanpan1.1panPan2
DMXL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1118,435,939 - 8,563,525 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl118,436,322 - 8,561,550 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha119,564,594 - 9,692,262 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0118,522,304 - 8,649,885 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl118,522,766 - 8,649,947 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1118,393,926 - 8,519,212 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0118,449,622 - 8,578,309 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0118,707,210 - 8,835,941 (+)NCBIUU_Cfam_GSD_1.0
Dmxl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213131,454,394 - 131,618,420 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367152,013,722 - 2,179,224 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367152,013,745 - 2,177,418 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DMXL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2123,003,086 - 123,141,060 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12123,003,077 - 123,142,865 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22128,440,506 - 128,543,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DMXL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12322,312,178 - 22,488,151 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2322,312,204 - 22,490,906 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603455,827,070 - 56,008,726 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000021829   ⟹   ENSHGLP00000021619
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247332,440,068 - 2,610,899 (-)Ensembl
RefSeq Acc Id: XM_004836160   ⟹   XP_004836217
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247332,440,068 - 2,610,899 (-)NCBI
RefSeq Acc Id: XM_004836161   ⟹   XP_004836218
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247332,440,068 - 2,610,899 (-)NCBI
RefSeq Acc Id: XM_021238180   ⟹   XP_021093839
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247332,438,874 - 2,610,987 (-)NCBI
RefSeq Acc Id: XM_021238183   ⟹   XP_021093842
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247332,438,874 - 2,610,987 (-)NCBI
RefSeq Acc Id: XM_021238188   ⟹   XP_021093847
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247332,442,468 - 2,610,987 (-)NCBI
RefSeq Acc Id: XM_021238193   ⟹   XP_021093852
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247332,476,520 - 2,610,987 (-)NCBI
RefSeq Acc Id: XM_021238196   ⟹   XP_021093855
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247332,438,874 - 2,610,987 (-)NCBI
RefSeq Acc Id: XP_021093855   ⟸   XM_021238196
- Peptide Label: isoform X7
- UniProtKB: G5C5M7 (UniProtKB/TrEMBL),   A0AAX6R9G0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093842   ⟸   XM_021238183
- Peptide Label: isoform X2
- UniProtKB: G5C5M7 (UniProtKB/TrEMBL),   A0AAX6RB70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093839   ⟸   XM_021238180
- Peptide Label: isoform X1
- UniProtKB: G5C5M7 (UniProtKB/TrEMBL),   A0AAX6RCX1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836218   ⟸   XM_004836161
- Peptide Label: isoform X4
- UniProtKB: G5C5M7 (UniProtKB/TrEMBL),   A0AAX6NT01 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836217   ⟸   XM_004836160
- Peptide Label: isoform X3
- UniProtKB: G5C5M7 (UniProtKB/TrEMBL),   A0AAX6NSY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093847   ⟸   XM_021238188
- Peptide Label: isoform X5
- UniProtKB: G5C5M7 (UniProtKB/TrEMBL),   A0AAX6RDK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093852   ⟸   XM_021238193
- Peptide Label: isoform X6
- UniProtKB: G5C5M7 (UniProtKB/TrEMBL),   A0AAX6R8F2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000021619   ⟸   ENSHGLT00000021829


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015447 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021829 ENTREZGENE
Gene3D-CATH YVTN repeat-like/Quinoprotein amine dehydrogenase UniProtKB/TrEMBL
InterPro DmX-like/RAVE_component UniProtKB/TrEMBL
  Rav1p_C UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Dmxl1 ENTREZGENE
PANTHER DMX-LIKE PROTEIN 1 UniProtKB/TrEMBL
  RABCONNECTIN-RELATED UniProtKB/TrEMBL
Pfam Rav1p_C UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40 repeat-like UniProtKB/TrEMBL
UniProt A0AAX6NSY8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6NT01 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R8F2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R9G0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RB70 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RCX1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RDK2 ENTREZGENE, UniProtKB/TrEMBL
  G5C5M7 ENTREZGENE, UniProtKB/TrEMBL