Izumo1r (IZUMO1 receptor, JUNO) - Rat Genome Database

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Gene: Izumo1r (IZUMO1 receptor, JUNO) Chinchilla lanigera
Analyze
Symbol: Izumo1r
Name: IZUMO1 receptor, JUNO
RGD ID: 8711549
Description: ENCODES a protein that exhibits folic acid binding (ortholog); protein binding involved in heterotypic cell-cell adhesion (ortholog); signaling receptor activity (ortholog); INVOLVED IN cell adhesion (ortholog); fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); single fertilization (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: folate receptor 4, delta (putative); Folr4; sperm-egg fusion protein Juno
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955414283,630 - 287,433 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955414283,646 - 287,422 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Izumo1r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955414283,630 - 287,433 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955414283,646 - 287,422 (-)NCBIChiLan1.0ChiLan1.0
IZUMO1R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381194,304,580 - 94,308,146 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1194,304,580 - 94,308,146 (+)EnsemblGRCh38hg38GRCh38
GRCh371194,037,746 - 94,041,312 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361193,678,451 - 93,680,506 (+)NCBINCBI36Build 36hg18NCBI36
Celera1191,326,626 - 91,328,681 (+)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1190,108,391 - 90,110,446 (+)NCBIHuRef
CHM1_11193,921,817 - 93,923,872 (+)NCBICHM1_1
T2T-CHM13v2.01194,311,597 - 94,315,165 (+)NCBIT2T-CHM13v2.0
Izumo1r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39914,797,110 - 14,815,247 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl914,797,110 - 14,815,245 (-)EnsemblGRCm39 Ensembl
GRCm38914,885,814 - 14,903,951 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl914,885,814 - 14,903,949 (-)EnsemblGRCm38mm10GRCm38
MGSCv37914,690,258 - 14,708,395 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36914,636,207 - 14,654,325 (-)NCBIMGSCv36mm8
Celera912,166,552 - 12,184,689 (-)NCBICelera
Cytogenetic Map9A2NCBI
cM Map94.42NCBI
Izumo1r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,025,830 - 20,030,829 (-)NCBIGRCr8
mRatBN7.2811,744,384 - 11,748,131 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl811,725,863 - 11,748,465 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx815,729,242 - 15,733,012 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0814,026,986 - 14,030,756 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0812,002,693 - 12,006,472 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0813,416,418 - 13,418,907 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl813,416,393 - 13,420,439 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0813,358,388 - 13,362,662 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4811,697,856 - 11,703,408 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera813,213,994 - 13,216,483 (-)NCBICelera
Cytogenetic Map8q12NCBI
IZUMO1R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2995,158,740 - 95,162,308 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11196,250,459 - 96,254,027 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01189,318,370 - 89,322,004 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11192,805,614 - 92,807,669 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1192,805,614 - 92,807,669 (+)Ensemblpanpan1.1panPan2
IZUMO1R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1216,597,039 - 6,599,484 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl216,596,141 - 6,599,840 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha216,607,027 - 6,609,932 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0216,777,138 - 6,780,041 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl216,777,062 - 6,784,386 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1216,557,952 - 6,560,822 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0216,626,822 - 6,629,712 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0216,676,910 - 6,679,760 (-)NCBIUU_Cfam_GSD_1.0
Izumo1r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494779,274,912 - 79,277,682 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936674595,106 - 616,513 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936674614,455 - 616,513 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IZUMO1R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl926,517,292 - 26,520,860 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1926,516,091 - 26,520,949 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2930,211,999 - 30,215,363 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IZUMO1R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1185,527,589 - 85,532,968 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl185,527,999 - 85,530,703 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604340,253,230 - 40,259,153 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Izumo1r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473538,968,803 - 38,971,518 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473538,967,522 - 38,971,049 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000022259   ⟹   ENSCLAP00000022055
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955414283,630 - 287,433 (-)Ensembl
RefSeq Acc Id: XM_005379681   ⟹   XP_005379738
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955414283,646 - 287,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511756   ⟹   XP_013367210
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955414283,646 - 287,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511758   ⟹   XP_013367212
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955414283,646 - 287,422 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379738 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367210 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367212 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022055
  ENSCLAP00000022055.1
Reference Protein Sequences
RefSeq Acc Id: XP_005379738   ⟸   XM_005379681
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W4F0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367212   ⟸   XM_013511758
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013367210   ⟸   XM_013511756
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000022055   ⟸   ENSCLAT00000022259
Protein Domains
Folate receptor-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015110 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022259 ENTREZGENE
  ENSCLAT00000022259.1 UniProtKB/TrEMBL
InterPro Folate_rcpt UniProtKB/TrEMBL
  Folate_rcpt-like UniProtKB/TrEMBL
NCBI Gene Folr4 ENTREZGENE
PANTHER PTHR10517 UniProtKB/TrEMBL
  SPERM-EGG FUSION PROTEIN JUNO UniProtKB/TrEMBL
Pfam Folate_rec UniProtKB/TrEMBL
UniProt A0A8C2W4F0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Izumo1r  IZUMO1 receptor, JUNO  Folr4  folate receptor 4, delta (putative)  Symbol and/or name change 5135510 APPROVED