Ubl3 (ubiquitin like 3) - Rat Genome Database

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Gene: Ubl3 (ubiquitin like 3) Chinchilla lanigera
Analyze
Symbol: Ubl3
Name: ubiquitin like 3
RGD ID: 8700066
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin-like 3; ubiquitin-like protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543115,992,353 - 16,046,647 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543115,991,559 - 16,046,647 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ubl3Chinchillaprotein binding enablesISOUniProtKB:P02766 and UniProtKB:P076869068941 PMID:32814053IntActPMID:32814053
Ubl3Chinchillaprotein binding enablesISOUniProtKB:Q8TC57 more ...9068941 PMID:32296183IntActPMID:32296183


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:22301074  



Ubl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543115,992,353 - 16,046,647 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543115,991,559 - 16,046,647 (+)NCBIChiLan1.0ChiLan1.0
UBL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381329,764,371 - 29,850,617 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1329,764,371 - 29,850,617 (-)EnsemblGRCh38hg38GRCh38
GRCh371330,338,508 - 30,424,754 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361329,236,542 - 29,322,160 (-)NCBINCBI36Build 36hg18NCBI36
Build 341329,236,543 - 29,322,160NCBI
Celera1311,408,157 - 11,494,450 (-)NCBICelera
Cytogenetic Map13q12.3NCBI
HuRef1311,152,796 - 11,238,892 (-)NCBIHuRef
CHM1_11330,306,077 - 30,392,355 (-)NCBICHM1_1
T2T-CHM13v2.01328,987,070 - 29,073,260 (-)NCBIT2T-CHM13v2.0
Ubl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395148,441,441 - 148,489,689 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5148,441,445 - 148,489,599 (-)EnsemblGRCm39 Ensembl
GRCm385148,504,631 - 148,552,879 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5148,504,635 - 148,552,789 (-)EnsemblGRCm38mm10GRCm38
MGSCv375149,316,207 - 149,364,364 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365148,814,996 - 148,862,982 (-)NCBIMGSCv36mm8
Celera5146,505,918 - 146,554,062 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map588.66NCBI
Ubl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,509,912 - 11,554,548 (+)NCBIGRCr8
mRatBN7.2126,473,684 - 6,518,331 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl126,473,460 - 6,518,862 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx127,159,191 - 7,204,106 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,782,324 - 7,827,239 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0126,810,332 - 6,855,256 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0127,865,938 - 7,911,526 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl127,865,938 - 7,911,525 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0129,953,322 - 9,997,648 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4127,019,485 - 7,063,818 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1127,049,412 - 7,093,745 (+)NCBI
Celera128,222,177 - 8,266,763 (+)NCBICelera
Cytogenetic Map12p11NCBI
UBL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21429,351,149 - 29,437,420 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11320,457,885 - 20,544,192 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01311,044,601 - 11,130,825 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11329,082,854 - 29,169,035 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1329,082,851 - 29,169,061 (-)Ensemblpanpan1.1panPan2
UBL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12510,100,524 - 10,169,042 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,982,021 - 10,166,750 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2510,145,022 - 10,213,974 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02510,213,367 - 10,282,343 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2510,095,255 - 10,282,334 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12510,107,839 - 10,176,782 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02510,115,261 - 10,184,204 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02510,157,090 - 10,226,057 (+)NCBIUU_Cfam_GSD_1.0
Ubl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945171,244,403 - 171,304,268 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647224,647,887 - 24,707,758 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647224,647,763 - 24,707,752 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1116,698,003 - 6,763,612 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2116,453,534 - 6,518,347 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.138,706,211 - 8,778,894 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl38,705,131 - 8,778,062 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605735,586,728 - 35,659,815 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247768,594,333 - 8,664,899 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247768,561,188 - 8,662,943 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Ensembl Acc Id: ENSCLAT00000005409   ⟹   ENSCLAP00000005313
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543115,992,353 - 16,046,647 (+)Ensembl
RefSeq Acc Id: XM_013515870   ⟹   XP_013371324
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543115,991,559 - 16,046,647 (+)NCBI
Sequence:
Protein RefSeqs XP_013371324 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000005313
  ENSCLAP00000005313.1
RefSeq Acc Id: XP_013371324   ⟸   XM_013515870
- UniProtKB: A0A8C2UU12 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000005313   ⟸   ENSCLAT00000005409
Ubiquitin-like



1 to 18 of 18 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000003772 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005409 ENTREZGENE
  ENSCLAT00000005409.1 UniProtKB/TrEMBL
Gene3D-CATH Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
InterPro MUB UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  UBL3-like UniProtKB/TrEMBL
  UBL3-like_ubiquitin_dom UniProtKB/TrEMBL
  UBL3_Ubl_met UniProtKB/TrEMBL
NCBI Gene Ubl3 ENTREZGENE
PANTHER PTHR13169 UniProtKB/TrEMBL
  UBIQUITIN-LIKE PROTEIN 3 UniProtKB/TrEMBL
Pfam Rad60-SLD_2 UniProtKB/TrEMBL
PIRSF MUB UniProtKB/TrEMBL
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A8C2UU12 ENTREZGENE, UniProtKB/TrEMBL
1 to 18 of 18 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ubl3  ubiquitin like 3    ubiquitin-like 3  Symbol and/or name change 5135510 APPROVED