UBL3 (ubiquitin like 3) - Rat Genome Database

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Gene: UBL3 (ubiquitin like 3) Canis lupus familiaris
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Symbol: UBL3
Name: ubiquitin like 3
RGD ID: 12341023
Description: FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin-like protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12510,100,524 - 10,169,042 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,982,021 - 10,166,750 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2510,145,022 - 10,213,974 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02510,213,367 - 10,282,343 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2510,095,255 - 10,282,334 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12510,107,839 - 10,176,782 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02510,115,261 - 10,184,204 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02510,157,090 - 10,226,057 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
UBL3Dogmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
UBL3Dogplasma membrane located_inIEAUniRule:UR000483753150520179 UniProtGO_REF:0000104
UBL3Dogplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
UBL3Dogplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
UBL3Dogprotein binding enablesISOUniProtKB:P02766 and UniProtKB:P076869068941 PMID:32814053IntActPMID:32814053
UBL3Dogprotein binding enablesISOUniProtKB:Q8TC57 more ...9068941 PMID:32296183IntActPMID:32296183

PMID:22301074  



UBL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12510,100,524 - 10,169,042 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,982,021 - 10,166,750 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2510,145,022 - 10,213,974 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02510,213,367 - 10,282,343 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2510,095,255 - 10,282,334 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12510,107,839 - 10,176,782 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02510,115,261 - 10,184,204 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02510,157,090 - 10,226,057 (+)NCBIUU_Cfam_GSD_1.0
UBL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381329,764,371 - 29,850,617 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1329,764,371 - 29,850,617 (-)EnsemblGRCh38hg38GRCh38
GRCh371330,338,508 - 30,424,754 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361329,236,542 - 29,322,160 (-)NCBINCBI36Build 36hg18NCBI36
Build 341329,236,543 - 29,322,160NCBI
Celera1311,408,157 - 11,494,450 (-)NCBICelera
Cytogenetic Map13q12.3NCBI
HuRef1311,152,796 - 11,238,892 (-)NCBIHuRef
CHM1_11330,306,077 - 30,392,355 (-)NCBICHM1_1
T2T-CHM13v2.01328,987,070 - 29,073,260 (-)NCBIT2T-CHM13v2.0
Ubl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395148,441,441 - 148,489,689 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5148,441,445 - 148,489,599 (-)EnsemblGRCm39 Ensembl
GRCm385148,504,631 - 148,552,879 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5148,504,635 - 148,552,789 (-)EnsemblGRCm38mm10GRCm38
MGSCv375149,316,207 - 149,364,364 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365148,814,996 - 148,862,982 (-)NCBIMGSCv36mm8
Celera5146,505,918 - 146,554,062 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map588.66NCBI
Ubl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,509,912 - 11,554,548 (+)NCBIGRCr8
mRatBN7.2126,473,684 - 6,518,331 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl126,473,460 - 6,518,862 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx127,159,191 - 7,204,106 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,782,324 - 7,827,239 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0126,810,332 - 6,855,256 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0127,865,938 - 7,911,526 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl127,865,938 - 7,911,525 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0129,953,322 - 9,997,648 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4127,019,485 - 7,063,818 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1127,049,412 - 7,093,745 (+)NCBI
Celera128,222,177 - 8,266,763 (+)NCBICelera
Cytogenetic Map12p11NCBI
Ubl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543115,992,353 - 16,046,647 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543115,991,559 - 16,046,647 (+)NCBIChiLan1.0ChiLan1.0
UBL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21429,351,149 - 29,437,420 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11320,457,885 - 20,544,192 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01311,044,601 - 11,130,825 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11329,082,854 - 29,169,035 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1329,082,851 - 29,169,061 (-)Ensemblpanpan1.1panPan2
Ubl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945171,244,403 - 171,304,268 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647224,647,887 - 24,707,758 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647224,647,763 - 24,707,752 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1116,698,003 - 6,763,612 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2116,453,534 - 6,518,347 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.138,706,211 - 8,778,894 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl38,705,131 - 8,778,062 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605735,586,728 - 35,659,815 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247768,594,333 - 8,664,899 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247768,561,188 - 8,662,943 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in UBL3
474 total Variants



adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10


1 to 15 of 15 rows
RefSeq Transcripts XM_005635490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038434943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038509927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038573357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038573358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038637650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 15 of 15 rows

Ensembl Acc Id: ENSCAFT00000010690   ⟹   ENSCAFP00000009911
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl259,982,021 - 10,165,880 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000047678   ⟹   ENSCAFP00000035954
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2510,100,587 - 10,166,750 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845039183   ⟹   ENSCAFP00845030688
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2510,095,255 - 10,279,181 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845039224   ⟹   ENSCAFP00845030722
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2510,213,054 - 10,282,334 (+)Ensembl
RefSeq Acc Id: XM_005635490   ⟹   XP_005635547
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12510,100,524 - 10,169,042 (+)NCBI
Dog10K_Boxer_Tasha2510,145,022 - 10,213,974 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038434942   ⟹   XP_038290870
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02510,213,367 - 10,282,343 (+)NCBI
RefSeq Acc Id: XM_038434943   ⟹   XP_038290871
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02510,257,785 - 10,282,343 (+)NCBI
RefSeq Acc Id: XM_038458419   ⟹   XP_038314347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2510,189,416 - 10,213,974 (+)NCBI
RefSeq Acc Id: XM_038509926   ⟹   XP_038365854
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12510,107,839 - 10,176,782 (+)NCBI
RefSeq Acc Id: XM_038509927   ⟹   XP_038365855
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12510,152,228 - 10,176,782 (+)NCBI
RefSeq Acc Id: XM_038573357   ⟹   XP_038429285
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02510,157,090 - 10,226,057 (+)NCBI
RefSeq Acc Id: XM_038573358   ⟹   XP_038429286
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02510,201,498 - 10,226,057 (+)NCBI
RefSeq Acc Id: XM_038637649   ⟹   XP_038493577
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02510,115,261 - 10,184,204 (+)NCBI
RefSeq Acc Id: XM_038637650   ⟹   XP_038493578
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02510,159,644 - 10,184,204 (+)NCBI
1 to 5 of 14 rows
1 to 5 of 14 rows
RefSeq Acc Id: XP_005635547   ⟸   XM_005635490
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PE62 (UniProtKB/TrEMBL),   A0A8C0R7J7 (UniProtKB/TrEMBL),   A0A8I3PJ86 (UniProtKB/TrEMBL),   A0A8C0Z0H3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000009911   ⟸   ENSCAFT00000010690
Ensembl Acc Id: ENSCAFP00000035954   ⟸   ENSCAFT00000047678
RefSeq Acc Id: XP_038365854   ⟸   XM_038509926
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038365855   ⟸   XM_038509927
- Peptide Label: isoform X2
Ubiquitin-like



1 to 33 of 33 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCAFG00000032748 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030022077 UniProtKB/TrEMBL
  ENSCAFG00040017109 UniProtKB/TrEMBL
  ENSCAFG00845022214 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010690.5 UniProtKB/TrEMBL
  ENSCAFT00000105662.1 UniProtKB/TrEMBL
  ENSCAFT00030040529.1 UniProtKB/TrEMBL
  ENSCAFT00040031691.1 UniProtKB/TrEMBL
  ENSCAFT00845039183.1 UniProtKB/TrEMBL
  ENSCAFT00845039224 ENTREZGENE
  ENSCAFT00845039224.1 UniProtKB/TrEMBL
Gene3D-CATH Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
InterPro MUB UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  UBL3-like UniProtKB/TrEMBL
  UBL3-like_ubiquitin_dom UniProtKB/TrEMBL
  UBL3_Ubl_met UniProtKB/TrEMBL
KEGG Report cfa:607436 UniProtKB/TrEMBL
NCBI Gene UBL3 ENTREZGENE
PANTHER PTHR13169 UniProtKB/TrEMBL
  UBIQUITIN-LIKE PROTEIN 3 UniProtKB/TrEMBL
Pfam Rad60-SLD_2 UniProtKB/TrEMBL
PIRSF MUB UniProtKB/TrEMBL
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A8C0PE62 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R7J7 ENTREZGENE
  A0A8C0Z0H3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PJ86 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PQE1_CANLF UniProtKB/TrEMBL
  A0A8P0N919_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:48076 ENTREZGENE
1 to 33 of 33 rows