LOC102551771 (keratin-associated protein 20-2-like) - Rat Genome Database

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Gene: LOC102551771 (keratin-associated protein 20-2-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC102551771
Name: keratin-associated protein 20-2-like
RGD ID: 7700217
Description: Predicted to be located in cytosol and intermediate filament. Orthologous to human KRTAP20-1 (keratin associated protein 20-1).
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81141,928,299 - 41,928,475 (+)NCBIGRCr8
mRatBN7.21128,438,073 - 28,443,053 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1128,442,092 - 28,442,268 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01129,092,172 - 29,092,348 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01132,710,659 - 32,710,835 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1128,150,102 - 28,150,278 (+)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC102551771Ratcytosol located_inIEAARBA:ARBA000292431600115GO_REF:0000117UniProtGO_REF:0000117
LOC102551771Ratintermediate filament located_inIEAUniProtKB-KW:KW-04161600115GO_REF:0000043UniProtGO_REF:0000043



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Variants in LOC102551771
94 total Variants

1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat

1 to 10 of 13 rows






RefSeq Acc Id: XM_063270965   ⟹   XP_063127035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81141,928,299 - 41,928,475 (+)NCBI
Protein RefSeqs XP_063127035 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065917
  ENSRNOP00000065917.3
RefSeq Acc Id: XP_063127035   ⟸   XM_063270965
- UniProtKB: M0R8W2 (UniProtKB/TrEMBL)


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 10 of 10 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-21992 BioCyc
Ensembl Genes ENSRNOG00000050693 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000073385 ENTREZGENE
  ENSRNOT00000073385.3 UniProtKB/TrEMBL
InterPro KRTAP_type6/8/16/19/20/21 UniProtKB/TrEMBL
NCBI Gene LOC102551771 ENTREZGENE
Pfam KRTAP UniProtKB/TrEMBL
PhenoGen LOC102551771 PhenoGen
RatGTEx ENSRNOG00000050693 RatGTEx
UniProt M0R8W2 ENTREZGENE, UniProtKB/TrEMBL
1 to 10 of 10 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102551771  keratin-associated protein 20-2-like      Symbol and Name status set to provisional 70820 PROVISIONAL