LOC102551534 (uncharacterized LOC102551534) - Rat Genome Database

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Gene: LOC102551534 (uncharacterized LOC102551534) Rattus norvegicus
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Symbol: LOC102551534
Name: uncharacterized LOC102551534
RGD ID: 7646732
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85163,802,267 - 163,809,476 (+)NCBIGRCr8
mRatBN7.25158,519,138 - 158,525,313 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.05164,898,531 - 164,902,797 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05168,556,664 - 168,561,901 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5156,798,976 - 156,803,900 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in LOC102551534
22 total Variants

1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat

1 to 10 of 24 rows





1 to 19 of 19 rows
RefSeq Transcripts XR_001843796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_592777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_592778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 19 of 19 rows

RefSeq Acc Id: XR_005505087
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,802,280 - 163,809,476 (+)NCBI
mRatBN7.25158,519,143 - 158,523,778 (+)NCBI
RefSeq Acc Id: XR_005505088
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,802,277 - 163,809,476 (+)NCBI
mRatBN7.25158,519,139 - 158,523,778 (+)NCBI
RefSeq Acc Id: XR_005505089
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,802,279 - 163,809,476 (+)NCBI
mRatBN7.25158,519,142 - 158,523,778 (+)NCBI
RefSeq Acc Id: XR_005505090
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,802,279 - 163,809,476 (+)NCBI
mRatBN7.25158,519,141 - 158,523,778 (+)NCBI
RefSeq Acc Id: XR_005505092
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,802,278 - 163,809,476 (+)NCBI
mRatBN7.25158,519,142 - 158,523,778 (+)NCBI
RefSeq Acc Id: XR_005505093
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,802,279 - 163,809,476 (+)NCBI
mRatBN7.25158,519,142 - 158,523,778 (+)NCBI
RefSeq Acc Id: XR_005505094
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,802,279 - 163,809,476 (+)NCBI
mRatBN7.25158,519,142 - 158,523,778 (+)NCBI
RefSeq Acc Id: XR_010066728
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,802,271 - 163,809,476 (+)NCBI
RefSeq Acc Id: XR_010066729
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,802,271 - 163,809,476 (+)NCBI
RefSeq Acc Id: XR_010066730
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,802,267 - 163,809,476 (+)NCBI
RefSeq Acc Id: XR_010066731
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,802,279 - 163,809,476 (+)NCBI
RefSeq Acc Id: XR_010066732
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,802,267 - 163,809,476 (+)NCBI
RefSeq Acc Id: XR_010066733
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,802,276 - 163,809,476 (+)NCBI


Database
Acc Id
Source(s)
BioCyc Gene G2FUF-39185 BioCyc
NCBI Gene LOC102551534 ENTREZGENE
PhenoGen LOC102551534 PhenoGen
RNAcentral URS0000CCE2FB RNACentral
  URS0000CCF1B5 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102551534  uncharacterized LOC102551534      Symbol and Name status set to provisional 70820 PROVISIONAL