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Gene: LOC102553276 (uncharacterized LOC102553276) Rattus norvegicus

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Symbol:

LOC102553276

Name:

uncharacterized LOC102553276

RGD ID:

7610401

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	48,359,965 - 48,390,904 (+)	NCBI		GRCr8
mRatBN7.2	19	31,455,247 - 31,487,135 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	19	35,159,691 - 35,191,034 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	19	46,032,283 - 46,063,808 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	19	30,914,851 - 30,944,909 (+)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Variants in LOC102553276
198 total Variants

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31963836	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	1	36824771	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	29322490	57337602	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat
61328	Eae8	Experimental allergic encephalomyelitis QTL 8	4		nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	19	24816041	33061905	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	15114598	34521833	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	1	36824771	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	15605023	46559041	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	24817978	39654489	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	27530207	37947399	Rat
724565	Tcas5	Tongue tumor susceptibility QTL 5	10.04		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	19	9977753	39654489	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	1	36824771	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	7457249	42983518	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10827970	43544039	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	36824771	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	27530207	37947399	Rat
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	27530207	37947399	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XR_001834682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001842293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010060468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010060469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010060470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_342314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_342315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_361812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_597244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_001842293

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	48,360,903 - 48,390,904 (+)	NCBI
mRatBN7.2	19	31,455,305 - 31,486,746 (+)	NCBI
Rnor_6.0	19	35,159,705 - 35,191,034 (+)	NCBI

Sequence:

show sequence

ACACAGGTTATTCAGACAGGTAGACATTGTTGAGAGTCAGGTTTGAGTATAGGACTAAACCCATGCTTCTGATTTTCCTGCCCAGGTAGGAGGAGGCTTCAGTACTGGCAAGAAAATGGCTTTATTAC
CAGCCCCATGTTATATGAATTCTGAATTTTTCTCTTTGCTTTCCAAGACATTGGCTTCTCTGTTGCTTTGTTTGAGTCAGTTTAGTTTAATTTTTCATTATGACAGATTTTCGCCTCCAATTCTTTAT
TTAGAGCATAGCTCTCAAACTTGTTCATTCTGTAATCCCTTTGAGGGTTTGCACAGCCCTCAAACATACCTTGAAACAGTTTGCTACCAAAATAAAAGCACGGAAGAATCATGTGGCTGTTGAGATGA
AAAAAAAAACCACACAGGTAATATTTTTTATTTCGAAGGAAAGCAGTAGGCTCTGAGTGCAGAGGAGGAAAGGGGACAGAAAGGGGAGAAAAGGCATGGTGGTCAGGGCTCTTGGTCTCATAGCTAGA
GAAAATCATCAGAAGGTATTTGTATAAATCCAAAGGCTCCCCGGCCAAGCAGATGTTCAGAGTATCATAGCTCCGGGCTTGGAGTTCTTTCGGATTGTCCCTGGGGAAACGCTACATCGTCTGAGAAA
TAAGAACAGTGATGTGGAAGGAGCAACTCGTTCTTCTTTGTGCGCATTCTCTGCTTTTCTTTCTCCTCTGCCCCAATCCTCTCCTCGCTCCTCTCTCTGGATTGCCCCCATAGGCCTCCTTGCCACTT
GCCCACTCCTTCGGAAGAGATCTGAGGCTCTCGTCCATTTCTTTGTGATTCCTGAAGCCTTCGTGGACTTTTGCCTTCCAACCTGGGCTTGTTATCTCTTACTGGTTAGCAGGGATTGGCGTCCAGTA
AATCCCAGCAGCCGTTCTCTTTAGCCTGTTCATCGTATTTGTACGTGGTTTTCCTGAGTTGATAAACCCGCGGCTGTTTTTCTCTTCAAGTTCCCCCTTCAGTTTCTGTGCTAATGAACAACTTCCTG
CCTTGAGGCTCTGGTAAGTGCAATGAAGGCACCGGGAGTGCAGAGTTTAGCCAGGGCCTTACGAGACCTTAACCCAGCATTGTGTGCCCGTTGGGTGACTCTCCTTTTTGGACTTGGACGAAAGACTT
ATTAATACTTAAGAGTATCAGCTTTTTCCTCATATGAAGACTGTATAGCCACAGGAGGCTCAGCTGCCATCAAGGTTGGCAGTTGTTCCTTCCAAAGTCCTCTCTGATGCCTGATTCTCATTGGGCCA
ACCCTACGACTGCTCGCTTTGTGACACAGCACTAAGAATTCTGTCTGTGCATTCTCCTCAGTCTCCTAGTCTAACAATAGCAGACTCAGTGAATATCTTGTAACAGAAAATGTTAAACTAATTTCCAC
AGTGGCTTCATGTGTTCAAATCCCCATCAACTGCGAACCATCTAGCTTCGTGAGTTTTGCTGTCAACAACTAGAGGTACCCTAAGAAGCAAGAAGTTCAGCTATATGGTGGATCAAGACAATTATTAA
ACTCAGGAAAGAATGAAAT

hide sequence

RefSeq Acc Id:

XR_005496785

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	48,361,952 - 48,390,904 (+)	NCBI
mRatBN7.2	19	31,457,883 - 31,486,746 (+)	NCBI

RefSeq Acc Id:

XR_005496786

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	48,359,965 - 48,390,904 (+)	NCBI
mRatBN7.2	19	31,457,913 - 31,486,746 (+)	NCBI

RefSeq Acc Id:

XR_005496787

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	48,359,967 - 48,390,904 (+)	NCBI
mRatBN7.2	19	31,455,273 - 31,486,746 (+)	NCBI

RefSeq Acc Id:

XR_005496788

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	48,359,965 - 48,390,904 (+)	NCBI
mRatBN7.2	19	31,457,913 - 31,487,135 (+)	NCBI

RefSeq Acc Id:

XR_005496789

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	48,359,967 - 48,390,904 (+)	NCBI
mRatBN7.2	19	31,455,247 - 31,487,135 (+)	NCBI

RefSeq Acc Id:

XR_010060468

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	48,360,913 - 48,390,904 (+)	NCBI

RefSeq Acc Id:

XR_010060469

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	48,359,965 - 48,390,904 (+)	NCBI

RefSeq Acc Id:

XR_010060470

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	48,360,913 - 48,390,904 (+)	NCBI

RefSeq Acc Id:

XR_361812

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	48,360,892 - 48,390,904 (+)	NCBI
mRatBN7.2	19	31,455,261 - 31,487,123 (+)	NCBI
Rnor_6.0	19	35,159,691 - 35,191,034 (+)	NCBI
Rnor_5.0	19	46,032,283 - 46,063,808 (+)	NCBI

Sequence:

show sequence

ATACTCATTCACTCACACAGGTTATTCAGACAGGTAGACATTGTTGAGAGTCAGGTTTGAGTAT
AGGACTAAACCCATGCTTCTGATTTTCCTGCCCAGGTAGGAGGAGGCTTCAGTACTGGCAAGAAAATGGCTTTATTACCAGCCCCATGTTATATGAATTCTGAATTTTTCTCTTTGCTTTCCAAGACA
TTGGCTTCTCTGTTGCTTTGTTTGAGTCAGTTTAGTTTAATTTTTCATTATGACAGATTTTCGCCTCCAATTCTTTATTTAGAGCATAGCTCTCAAACTTGTTCATTCTGTAATCCCTTTGAGGGTTT
GCACAGCCCTCAAACATACCTTGAAACAGTTTGCTACCAAAATAAAAGCACGGAAGAATCATGTGGCTGTTGAGATGAAAAAAAAAACCACACAGGTAATATTTTTTATTTCGAAGGAAAGCAGTAGG
CTCTGAGTGCAGAGGAGGAAAGGGGACAGAAAGGGGAGAAAAGGCATGGTGGTCAGGGCTCTTGGTCTCATAGCTAGAGAAAATCATCAGAAGGTATTTGTATAAATCCAAAGGCTCCCCGGCCAAGC
AGATGTTCAGAGTATCATAGCTCCGGGCTTGGAGTTCTTTCGGATTGTCCCTGGGGAAACGCTACATCGTCTGAGAAATAAGAACAGTGATGTGGAAGGAGCAACTCGTTCTTCTTTGTGCGCATTCT
CTGCTTTTCTTTCTCCTCTGCCCCAATCCTCTCCTCGCTCCTCTCTCTGGATTGCCCCCATAGGCCTCCTTGCCACTTGCCCACTCCTTCGGAAGAGATCTGAGGCTCTCGTCCATTTCTTTGTGATT
CCTGAAGCCTTCGTGGACTTTTGCCTTCCAACCTGGGCTTGTTATCTCTTACTGGTTAGCAGGGATTGGCGTCCAGTAAATCCCAGCAGCCGTTCTCTTTAGCCTGTTCATCGTATTTGTACGTGGTT
TTCCTGAGTTGATAAACCCGCGGCTGTTTTTCTCTTCAAGTTCCCCCTTCAGTTTCTGTGCTAATGAACAACTTCCTGCCTTGAGGCTCTGGTAAGTGCAATGAAGGCACCGGGAGTGCAGAGTTTAG
CCAGGGCCTTACGAGACCTTAACCCAGCATTGTGTGCCCGTTGGGTGACTCTCCTTTTTGGACTTGGACGAAAGACTTATTAATACTTAAGAGTATCAGCTTTTTCCTCATATGAAGACTGTATAGCC
ACAGGAGGCTCAGCTGCCATCAAGGTTGGCAGTTGTTCCTTCCAAAGTCCTCTCTGATGCCTGATTCTCATTGGGCCAACCCTACGACTGCTCGCTTTGTGACACAGCACTAAGAATTCTGTCTGTGC
ATTCTCCTCAGTCTCCTAGTCTAACAATAGCAGACTCAGTGAATATCTTGTAACAGAAAATGTTAAACTAATTTCCACAGTGGCTTCATGTGTTCAAATCCCCATCAACTGCGAACCATCTAGCTTCG
TGAGTTTTGCTGTCAACAACTAGAGGGTACACGAATCTCTCGGTAATTACAGAGCTAGCCTCCTGAACGACTTCCATGATTAAAAAATTTCATCATCAAAGGTACCCTAAGAAGCAAGAAGTTCAGCT
ATATGGTGGATCAAGACAATTATTAAACTCAGGAAAGAATGAAAT

hide sequence

RefSeq Acc Id:

XR_597244

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	48,359,965 - 48,390,904 (+)	NCBI
mRatBN7.2	19	31,457,883 - 31,487,128 (+)	NCBI
Rnor_6.0	19	35,161,105 - 35,191,034 (+)	NCBI

Sequence:

show sequence

AGTTTTACAAGCTTTCTGGGATTCTGTTGTTTGTTTGATAGATTTTTTTTTTAAGTCCAGTTTG
GGGATGATGTTTTCTCTGCTTATTTCAAACTTCTGATTAGTTGCCTTAACCTCAATTTCTTTCTACTTGTATTGATGGCTTAAAATTATTCACCTTCCCCCACTGTCCCTCTGTCCTGTACAGTGAGT
CAGATCGCATGCCCTCCCCCATCCCCGGCTCTATCTAAGTGGTCCAATTTTCTGGTTTTTACTGGAAGTCAGATCAAAACTACTTTTCCCCCCTTGAGATCTAACTCTAACCCTCTGGGAGATGTAAG
TGTGATAGAGTCTTATTATTAATTTGTCCCACAGGTAGGCTTTGATTTATTTTCCCCTTTCCTTAACATTTCGTTATTCTTTCAAACCTATTCTATCTAGCAATTGATGTCCCCACCTGTGTGCACTA
CTCCTAGTACTTGAAGTTAATAGCAAAATCTAGTTCATCTTATTTCACATGCAACGTCAATTCCCAATTCTCAATAACAGGAAATTCAACATCAAACACCCATGTACAAACTTTAAATCAGCCTGAAA
ATCTACATGGATGGCCATCTTAAGGAAGTTCCTCTCATTTCCCACTCATTGAATAATTCTTTAAAATGATCAATTTCCCAAGACTCTAGCTGACTTGTTTGGCATAAACAATTACCTGCGTGGATGGA
GGATAGTTTCTCTAAACCATCAAACCAATACATTATCAAGTACATCTGGATGCTGGTCAACAGACTGACTTAGATACACAATACAAGGACAACTGGCTTTCCATTCCAGAGATGATGCAGATTTTTCT
GCTTTTGCAAGATTAAACAGAAATATGAACTTCTGCCGCAACCTCAAAGGTTTGCAGACAAGCAGGTGCGGGGACCTCGCTGATCTTGCTCTAAGTCGAAAGGAGGAGTAGAAATTGTGCCATAAACA
ATTCTCTATTGTTTGCATTTCCACACAACCACTGTCGTTGGAACACAGAATGCAGAAAGTAAAAGCATCTCAGAATTCCTGTAAGGTTTATAAGCCCCTCTGTTAGGCTTTGTCCTTTTGTGCGGAGT
TTCCTTTATCACAGTCACTATCATTTTCTCAATGTAATGATTACCTTTGAAGAAGTTGGTGGTGTGTGTGTGGGAAGAGCTGAACTTTGAAGTCCCATAGCTTGAGAAAATGTTAAACTAATTTCCAC
AGTGGCTTCATGTGTTCAAATCCCCATCAACTGCGAACCATCTAGCTTCGTGAGTTTTGCTGTCAACAACTAGAGGGTACACGAATCTCTCGGTAATTACAGAGCTAGCCTCCTGAACGACTTCCATG
ATTAAAAAATTTCATCATCAAAGGTACCCTAAGAAGCAAGAAGTTCAGCTATATGGTGGATCAAGACAATTATTAAACTCAGGAAAGAATGAAAT

hide sequence

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-5885	BioCyc
NCBI Gene	LOC102553276	ENTREZGENE
PhenoGen	LOC102553276	PhenoGen
RNAcentral	URS0000CCE974	RNACentral
	URS0000CCF3AA	RNACentral
	URS0000CCF51D	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-18	LOC102553276	uncharacterized LOC102553276			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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