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Gene: LOC102551884 (uncharacterized LOC102551884) Rattus norvegicus

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Symbol:

LOC102551884

Name:

uncharacterized LOC102551884

RGD ID:

7594145

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	69,252,821 - 69,274,033 (-)	NCBI		GRCr8
mRatBN7.2	11	55,746,807 - 55,767,560 (-)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	11	60,706,788 - 60,729,470 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	11	64,808,902 - 64,830,261 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	11	55,312,181 - 55,334,044 (-)	NCBI		Celera
Cytogenetic Map	11	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC102551884
87 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	1	69446234	Rat
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	18976208	86241447	Rat
70180	BpQTLcluster10	Blood pressure QTL cluster 10	3.19		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	11	34918041	79918041	Rat
1581565	Pur10	Proteinuria QTL 10		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	44803318	82846466	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	45459323	75190161	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	19456205	76331918	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	22959403	67959403	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	29528418	60324829	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	1041931	66113562	Rat
2298551	Neuinf10	Neuroinflammation QTL 10	3.7		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	11	31239134	78851519	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	40946188	82566702	Rat
2312566	Glom20	Glomerulus QTL 20	3.6	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	44285759	82566702	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	27672410	82846715	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	23280456	68280456	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	54457534	86241447	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	23280456	68280456	Rat
4889521	Gluco62	Glucose level QTL 62	2.82	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	55136729	82993457	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
1581572	Uae35	Urinary albumin excretion QTL 35		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	44803318	82846466	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	29528418	82566702	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_005491330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005491331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005491332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005491333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005491334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_339186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_358274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_005491330

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	69,252,821 - 69,274,033 (-)	NCBI
mRatBN7.2	11	55,746,807 - 55,767,560 (-)	NCBI

RefSeq Acc Id:

XR_005491331

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	69,252,821 - 69,274,013 (-)	NCBI
mRatBN7.2	11	55,746,807 - 55,767,513 (-)	NCBI

RefSeq Acc Id:

XR_005491332

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	69,252,821 - 69,274,002 (-)	NCBI
mRatBN7.2	11	55,746,807 - 55,767,498 (-)	NCBI

RefSeq Acc Id:

XR_005491333

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	69,252,821 - 69,273,956 (-)	NCBI
mRatBN7.2	11	55,746,807 - 55,767,435 (-)	NCBI

RefSeq Acc Id:

XR_005491334

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	69,260,452 - 69,273,989 (-)	NCBI
mRatBN7.2	11	55,755,763 - 55,767,471 (-)	NCBI

RefSeq Acc Id:

XR_010056139

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	69,252,821 - 69,274,033 (-)	NCBI

RefSeq Acc Id:

XR_358274

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	69,252,821 - 69,273,984 (-)	NCBI
mRatBN7.2	11	55,746,807 - 55,767,441 (-)	NCBI
Rnor_6.0	11	60,706,788 - 60,729,470 (-)	NCBI
Rnor_5.0	11	64,808,902 - 64,830,261 (-)	NCBI

Sequence:

show sequence

CTTATCTGAAAACTTCAGAAATGTGGTCAATAAATTGCTTTATAATCTCATTTACAAGAAAACT
CCACCTTCCTTAGATAAGCATACCAAAACATCGGGTTATTTTGTTTTTTGTTTTTTGTACTTAA
ACCTTAATTTAGCTGTAAAGTGGTTTTAACAGTGCAATTCAAAAGCCAAACGTTCTATGGTGAA
ATATGCACAGTCTCACGGGAAATAAATCTCATTCTCTCTGTCTTTGCAGCAACGGTGTGTACCA
ATCCCTTGGATGCACACTCTTATCCTTTACTTCAGGTTTATCTTGAAATATTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTATCAAGCTCCTGGTTCTACCGGAGTGGTGGTTCTGGAAGT
GCAGGTCGCAGAGCTGGCGGAGTTGTGTTGGGTTTTCTGCTATTGCTGACCACGGAAGGTGAAG
AAAATGAAGAGGACATTAAGAAACCCATCTGACCACTTCAAAGAGTTTTACTCACCTTTTCCCC
TGCATGAGAAAGTACCAAATTTTGTAAAAGTAAGAATTTTAAGTTCTTACGTTTTCCTTTCAGT
ATTTACAACCCACTATGTGTAATGGTGTGTGTTCGTGAGGGTACTTAAAATGTTCACCAAATAA
GAAAATGGCCAGTCTAGAAAAGAGAAATAATTAAAAATACTTGAGTAAGCTGTGAGCAAATCCT
GTAACTTCCTTGGACTCTAACAGTTGCAAGGTTTTATTGCCTCACAGTAAACATTGTGATCATA
CCTAGACAGCTGCCAAGTAACACTGTCTGAGGCCTGGGCCAGATAGGGATTGAATTTATTGCAT
TAGAGCAGGTCCCTAGGGTGCTTCTATTCTGAATTCTGAGTTTTCAGCCAACAACTTGGTGGGA
CTTTTGTTGTTCTGCAAATTTCCACCACACTTCAGAAGCACATCGGTTTTTACCAGCTGAGTTT
TAACTAGATGTGAATTCTGTGAGGCAAACAGTTCTCCTATCCACTGCTGGAGGCAGCTTTCTCT
CCTTGGATGATTTAATAAATAGGAGGGTTGACCACAGGAAAGTGTCTCAAGCTCTTGTGAAACA
GGGCCCTGTTGTGCCCTTCCTTCCTGGGTGACATAGTTGGAAATGGTTGCTGTGGAGACAAGCC
TCCCCAGAAATCAGTTTATGCCTGTTCTACCTTCATTTCTCACCCAGGTGTGGTGATTTAAATA
AACTCTTTGGTAGGATTAGAAGGATTAGGAAGCCTTGCTGCACTTTCAAAAACCCAAGGCCAGG
CTAGTCTCCACACCAACCCCCCTGCCCCCAATGGATTAGCATGTAGAACTCTTAGTACTGTGTC
TGCCTGCCTGCCACTATGCTCCCAACCAAGATGATAATGGACTAACCTCTGAAATGCAATAGAA
CAGTGACTGACCCCTGGCAAGTTTCAGGCTTCAGGAAAAGGCTGAAGAAAGAGTGTTCTGCAGT
AGAAATGGGGACAGAACCTGTTGATGCTTCGGTCTGGGTAGCTTGAAGACTCCATTCTGAGTGC
AGAATTCAGCACCTATGAAGATTTGAGGGGAAATGATGGATGATGCATCTCTCTGGAAAGTCTT
GGAAGGGCCCTTGTATCTTGGGGCTTTTCTGTGCCTGATGTGACCCAGGTCCTCTGGACTACAT
TTCTAATTTTGGTGCCTGAATCAATGGACCTGCTTCTAGAGGTGTGGCTGCTAAGCTTGGACAA
TTTAGGATATTGAAAGGTGGAAAAGGGAAGAGCTAATGAAATGCGTGTTGACTAGATTTCATAT
AGGAAGATGAAGAATGTAAAGAAAACAAAATCCTCCACCATTAGAAATGCAGCCACCTCTTCCT
AGCTGATTTGAATGATGTAAAACAGCATCTACAAAGCATCGTACACATAGACACGGCATTCCCA
ACGATCTATGGAGTTCACATGCCCGGAACTGGGGATCCTTTCACTCCAACACAGAAGTGAAGGC
ACTCTTCCAGATGACCAGAGTTAAACAGTTTGTGGTCTTGGGCAGGAAACTTCTACAAGAACCA
AACTCTAGCTACAAAGCTTCAAAGAATTCCCCGGCCACCTGGATAAAAACTTGACAGAAGCCAG
AGTCAGCTTGCACTTAGGTGTGGTATGCTCAGCTTGTCAACATCAATAAACTGCAAATGCAAAT
GAAATGAAATGCATTCCCTCATATGATGCAATAAACTGCAAATGCAAATGAAATGAAATGCATT
CCCTCATATGATGCAATAAAATGGGAAATTAGACCATGAGGGCTCTGTCTTTATGAATGTCCTT
CTAAGAGAGGTTGGAGGCAAGATTGGACGTTAGTACCCTATTGTGGAAAGGGGAGGAACTGACA
GGCCCTCTCCTTTTTGAAGATTTAGATGCAGTTAATAGTTAAGGGGGGAGAAAGGGACAGCAGT
GTAACTTCTTCAGTAGTGTAGCTGCTGGGTATGTGCCCGAGTTTCTTTAAAAGCCCCAAGCAGG
AGGTGGAGCAAAGGCTCAGCAGTACGAGCAGTAACTACTTGCTACCAGTTACTGCATGATACCC
CGGCTTGTTTGCCAGTAATCATATCAGGCTGCTCACAACTGCCTATAACTCCTGTTCCAGGAAT
CAGGAACCCTGTGCCATATATACATATACGGTGCACATAAACTCTCATAGGCGC

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Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-21362	BioCyc
NCBI Gene	LOC102551884	ENTREZGENE
PhenoGen	LOC102551884	PhenoGen
RNAcentral	URS0000CD0338	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-18	LOC102551884	uncharacterized LOC102551884			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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