TXN2 (thioredoxin 2) - Rat Genome Database

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Gene: TXN2 (thioredoxin 2) Homo sapiens
Analyze
Symbol: TXN2
Name: thioredoxin 2
RGD ID: 737462
HGNC Page HGNC:17772
Description: Predicted to enable peptide-methionine (R)-S-oxide reductase activity; peptide-methionine (S)-S-oxide reductase activity; and protein-disulfide reductase activity. Predicted to be involved in cell redox homeostasis. Located in mitochondrion and nucleolus. Implicated in combined oxidative phosphorylation deficiency 29.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: COXPD29; mitochondrial thioredoxin; MT-TRX; MTRX; thioredoxin, mitochondrial; thioredoxin-2; TRX2; TXN
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: TXN2P1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,467,046 - 36,481,640 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,467,046 - 36,481,640 (-)EnsemblGRCh38hg38GRCh38
GRCh372236,863,093 - 36,877,687 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,193,039 - 35,207,633 (-)NCBINCBI36Build 36hg18NCBI36
Build 342235,187,592 - 35,202,187NCBI
Celera2220,665,238 - 20,679,833 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2219,831,327 - 19,845,504 (-)NCBIHuRef
CHM1_12236,822,047 - 36,836,640 (-)NCBICHM1_1
T2T-CHM13v2.02236,927,219 - 36,941,813 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(E)-cinnamyl alcohol  (EXP)
1,1'-azobis(N,N-dimethylformamide)  (EXP,ISO)
1-chloro-2,4-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (ISO)
abexinostat  (EXP)
acrolein  (EXP)
acrylamide  (ISO)
alpha-hexylcinnamaldehyde  (EXP)
aluminium atom  (EXP)
aluminium(0)  (EXP)
ammonium chloride  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (EXP)
atrazine  (ISO)
auranofin  (EXP,ISO)
Bandrowski's base  (EXP)
benzo[a]pyrene  (ISO)
beta-lapachone  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
bortezomib  (EXP)
bosentan  (EXP)
brilliant green  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
calcium atom  (EXP)
calcium(0)  (EXP)
CGP 52608  (EXP)
chlorpyrifos  (ISO)
chromium(6+)  (EXP,ISO)
cinnamyl alcohol  (EXP)
cisplatin  (EXP)
clofibrate  (ISO)
cobalt dichloride  (EXP)
cocaine  (ISO)
corosolic acid  (EXP)
crystal violet  (EXP)
cyclosporin A  (EXP,ISO)
diarsenic trioxide  (EXP)
Dibutyl phosphate  (EXP)
dibutyl phthalate  (ISO)
diclofenac  (ISO)
dimethylarsinic acid  (ISO)
diquat  (ISO)
disulfiram  (EXP)
doxorubicin  (EXP,ISO)
epoxiconazole  (ISO)
etoposide  (EXP)
eugenol  (EXP)
flavonoids  (ISO)
flutamide  (ISO)
fumonisin B1  (ISO)
furan  (ISO)
gamma-hexachlorocyclohexane  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (EXP,ISO)
iron atom  (EXP)
iron(0)  (EXP)
isoeugenol  (EXP)
isoniazide  (ISO)
L-ascorbic acid  (ISO)
lipopolysaccharide  (EXP)
liquiritigenin  (ISO)
liquiritin  (ISO)
lycopene  (ISO)
mercury dichloride  (EXP)
methylene blue  (ISO)
monocrotaline  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
nickel sulfate  (EXP)
nitrofen  (ISO)
ochratoxin A  (EXP)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
peptidoglycan  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phlorizin  (ISO)
potassium dichromate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
sodium arsenite  (EXP)
sodium azide  (ISO)
sodium chromate  (EXP)
TCEP  (EXP)
tert-butyl hydroperoxide  (EXP)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (EXP)
thioacetamide  (ISO)
thiram  (EXP)
titanium dioxide  (ISO)
toluene  (ISO)
trans-isoeugenol  (EXP)
triapine  (EXP)
trichostatin A  (EXP)
triphenyl phosphate  (EXP)
troglitazone  (EXP,ISO)
tunicamycin  (EXP)
valproic acid  (EXP,ISO)
venlafaxine hydrochloride  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
dendrite  (IEA,ISO)
mitochondrial matrix  (TAS)
mitochondrion  (HTP,IBA,IDA,IEA)
neuronal cell body  (IEA,ISO)
nucleolus  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Redox regulation of resveratrol-mediated switching of death signal into survival signal. Das S, etal., Free Radic Biol Med. 2008 Jan 1;44(1):82-90. Epub 2007 Sep 21.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. Protective effect of tetraethyl pyrazine against focal cerebral ischemia/reperfusion injury in rats: therapeutic time window and its mechanism. Jia J, etal., Thromb Res. 2009 Mar;123(5):727-30. Epub 2009 Jan 6.
4. Effect of high glucose on gene expression in mesangial cells: upregulation of the thiol pathway is an adaptational response. Morrison J, etal., Physiol Genomics. 2004 May 19;17(3):271-82.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Cloning and expression of a novel mammalian thioredoxin. Spyrou G, etal., J Biol Chem 1997 Jan 31;272(5):2936-41.
8. [The change of thioredoxin system in myocardial tissue of type 2 diabetic rats undergoing myocardial injury]. Zhao XQ, etal., Sheng Li Xue Bao. 2010 Jun 25;62(3):261-8.
Additional References at PubMed
PMID:10591208   PMID:12032145   PMID:12080052   PMID:12477932   PMID:15461802   PMID:15489334   PMID:16424062   PMID:16868544   PMID:17220299   PMID:17548047   PMID:17601350   PMID:17634480  
PMID:17939155   PMID:18029348   PMID:18497292   PMID:18977241   PMID:19124506   PMID:19135121   PMID:19165900   PMID:19570036   PMID:19885567   PMID:20706999   PMID:20819778   PMID:20877624  
PMID:20929858   PMID:21158569   PMID:21327297   PMID:21557999   PMID:21726813   PMID:21800051   PMID:21873635   PMID:21988832   PMID:22658674   PMID:22939629   PMID:23291592   PMID:23485938  
PMID:24295294   PMID:24342608   PMID:24735978   PMID:25416956   PMID:26041303   PMID:26344197   PMID:26763822   PMID:28045936   PMID:28130258   PMID:28356525   PMID:28514442   PMID:28914755  
PMID:29791485   PMID:30021884   PMID:30733849   PMID:31515488   PMID:31536960   PMID:31915282   PMID:32296183   PMID:32814053   PMID:32920833   PMID:33763469   PMID:33961781   PMID:34349018  
PMID:34688818   PMID:34800366   PMID:35271311   PMID:35944360   PMID:38003443  


Genomics

Comparative Map Data
TXN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,467,046 - 36,481,640 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,467,046 - 36,481,640 (-)EnsemblGRCh38hg38GRCh38
GRCh372236,863,093 - 36,877,687 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,193,039 - 35,207,633 (-)NCBINCBI36Build 36hg18NCBI36
Build 342235,187,592 - 35,202,187NCBI
Celera2220,665,238 - 20,679,833 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2219,831,327 - 19,845,504 (-)NCBIHuRef
CHM1_12236,822,047 - 36,836,640 (-)NCBICHM1_1
T2T-CHM13v2.02236,927,219 - 36,941,813 (-)NCBIT2T-CHM13v2.0
Txn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391577,799,251 - 77,813,194 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1577,799,247 - 77,813,206 (-)EnsemblGRCm39 Ensembl
GRCm381577,915,051 - 77,928,994 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,915,047 - 77,929,006 (-)EnsemblGRCm38mm10GRCm38
MGSCv371577,745,481 - 77,759,424 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361577,742,306 - 77,756,249 (-)NCBIMGSCv36mm8
Celera1579,374,296 - 79,388,239 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1536.92NCBI
Txn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,377,338 - 111,390,940 (-)NCBIGRCr8
mRatBN7.27109,496,772 - 109,510,378 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,496,761 - 109,510,359 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,246,688 - 111,260,193 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,470,248 - 113,483,753 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,438,298 - 113,451,891 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,144,350 - 119,158,173 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,144,351 - 119,158,201 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,139,112 - 119,152,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47115,833,695 - 115,847,690 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17115,867,761 - 115,881,914 (-)NCBI
Celera7105,837,884 - 105,851,486 (-)NCBICelera
Cytogenetic Map7q34NCBI
Txn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,041,559 - 23,056,018 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,044,866 - 23,056,017 (-)NCBIChiLan1.0ChiLan1.0
TXN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,323,599 - 46,338,770 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,014,850 - 49,030,016 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,384,017 - 17,398,965 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,220,721 - 35,235,891 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,220,721 - 35,235,877 (-)Ensemblpanpan1.1panPan2
TXN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,947,647 - 27,960,634 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,948,571 - 27,959,910 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,901,673 - 27,914,661 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,733,351 - 28,746,338 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11028,461,701 - 28,474,674 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,769,602 - 28,782,587 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,948,151 - 28,961,119 (+)NCBIUU_Cfam_GSD_1.0
Txn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494511,299,941 - 11,310,299 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364924,311,287 - 4,321,763 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364924,310,394 - 4,320,714 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TXN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl511,264,645 - 11,283,395 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1511,264,470 - 11,289,388 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,997,069 - 9,010,525 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TXN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,168,693 - 19,185,898 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,169,286 - 19,185,735 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,687,070 - 106,704,531 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Txn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475211,249,656 - 11,260,118 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475211,248,640 - 11,260,118 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TXN2
46 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 22q12.3-13.1(chr22:35333993-38900177)x1 copy number loss See cases [RCV000051364] Chr22:35333993..38900177 [GRCh38]
Chr22:35729986..39296182 [GRCh37]
Chr22:34059986..37626128 [NCBI36]
Chr22:22q12.3-13.1
pathogenic
GRCh38/hg38 22q12.3-13.1(chr22:36068124-38002382)x3 copy number gain See cases [RCV000051683] Chr22:36068124..38002382 [GRCh38]
Chr22:36464172..38398389 [GRCh37]
Chr22:34794118..36728335 [NCBI36]
Chr22:22q12.3-13.1
pathogenic
GRCh38/hg38 22q12.3-13.33(chr22:33768441-50739977)x3 copy number gain See cases [RCV000051682] Chr22:33768441..50739977 [GRCh38]
Chr22:34164428..51178405 [GRCh37]
Chr22:32494428..49525271 [NCBI36]
Chr22:22q12.3-13.33
pathogenic
GRCh38/hg38 22q12.3(chr22:35753347-36593973)x3 copy number gain See cases [RCV000052854] Chr22:35753347..36593973 [GRCh38]
Chr22:36149394..36990020 [GRCh37]
Chr22:34479340..35319966 [NCBI36]
Chr22:22q12.3
uncertain significance
GRCh38/hg38 22q11.1-13.33(chr22:16916608-50739836)x3 copy number gain See cases [RCV000133646] Chr22:16916608..50739836 [GRCh38]
Chr22:17397498..51178264 [GRCh37]
Chr22:15777498..49525130 [NCBI36]
Chr22:22q11.1-13.33
pathogenic
GRCh38/hg38 22q11.1-13.33(chr22:16916743-50739785)x3 copy number gain See cases [RCV000134730] Chr22:16916743..50739785 [GRCh38]
Chr22:17397633..51178213 [GRCh37]
Chr22:15777633..49525079 [NCBI36]
Chr22:22q11.1-13.33
pathogenic
GRCh38/hg38 22q12.3(chr22:36313122-36561017)x3 copy number gain See cases [RCV000138088] Chr22:36313122..36561017 [GRCh38]
Chr22:36709167..36957064 [GRCh37]
Chr22:35039113..35287010 [NCBI36]
Chr22:22q12.3
uncertain significance
GRCh38/hg38 22q11.21-12.3(chr22:20907226-37187347)x3 copy number gain See cases [RCV000137926] Chr22:20907226..37187347 [GRCh38]
Chr22:21261514..37583387 [GRCh37]
Chr22:19591514..35913333 [NCBI36]
Chr22:22q11.21-12.3
pathogenic
GRCh37/hg19 22q12.3-13.1(chr22:35680095-38098981)x1 copy number loss See cases [RCV000207444] Chr22:35680095..38098981 [GRCh37]
Chr22:22q12.3-13.1
pathogenic
NM_012473.4(TXN2):c.71G>A (p.Trp24Ter) single nucleotide variant Combined oxidative phosphorylation deficiency 29 [RCV000207474] Chr22:36480767 [GRCh38]
Chr22:36876814 [GRCh37]
Chr22:22q12.3
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16054691-51237518)x3 copy number gain See cases [RCV000240091] Chr22:16054691..51237518 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q12.3-13.33(chr22:35728929-51220961)x3 copy number gain See cases [RCV000240469] Chr22:35728929..51220961 [GRCh37]
Chr22:22q12.3-13.33
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16054691-51220902)x3 copy number gain See cases [RCV000446956] Chr22:16054691..51220902 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16054691-51237463)x3 copy number gain See cases [RCV000448847] Chr22:16054691..51237463 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q12.3-13.1(chr22:36877226-38548989)x1 copy number loss See cases [RCV000512008] Chr22:36877226..38548989 [GRCh37]
Chr22:22q12.3-13.1
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16888900-51197838) copy number gain See cases [RCV000510873] Chr22:16888900..51197838 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
NM_012473.4(TXN2):c.35C>T (p.Ala12Val) single nucleotide variant not provided [RCV000514791] Chr22:36480803 [GRCh38]
Chr22:36876850 [GRCh37]
Chr22:22q12.3
uncertain significance
GRCh37/hg19 22q12.3-13.1(chr22:35674826-39466442)x3 copy number gain See cases [RCV000512385] Chr22:35674826..39466442 [GRCh37]
Chr22:22q12.3-13.1
likely pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16888900-51197838)x3 copy number gain See cases [RCV000512333] Chr22:16888900..51197838 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
Single allele duplication not provided [RCV000677973] Chr22:36785240..36995848 [GRCh37]
Chr22:22q12.3
uncertain significance
GRCh37/hg19 22q11.1-13.33(chr22:16054667-51243435)x3 copy number gain not provided [RCV000741689] Chr22:16054667..51243435 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q12.3(chr22:36844619-36988654)x3 copy number gain not provided [RCV000741942] Chr22:36844619..36988654 [GRCh37]
Chr22:22q12.3
benign
GRCh37/hg19 22q12.3(chr22:36870845-37007470)x3 copy number gain not provided [RCV000741943] Chr22:36870845..37007470 [GRCh37]
Chr22:22q12.3
benign
GRCh37/hg19 22q11.1-13.33(chr22:16114244-51195728)x3 copy number gain not provided [RCV000741691] Chr22:16114244..51195728 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16114244-51211392)x3 copy number gain not provided [RCV000741692] Chr22:16114244..51211392 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
NM_012473.4(TXN2):c.1-174T>C single nucleotide variant not provided [RCV001609898] Chr22:36481011 [GRCh38]
Chr22:36877058 [GRCh37]
Chr22:22q12.3
benign
NM_012473.4(TXN2):c.33G>A (p.Leu11=) single nucleotide variant not provided [RCV000884916] Chr22:36480805 [GRCh38]
Chr22:36876852 [GRCh37]
Chr22:22q12.3
benign
NM_012473.4(TXN2):c.258C>T (p.His86=) single nucleotide variant not provided [RCV000879202] Chr22:36480580 [GRCh38]
Chr22:36876627 [GRCh37]
Chr22:22q12.3
likely benign
NM_012473.4(TXN2):c.264-10G>A single nucleotide variant not provided [RCV000906502] Chr22:36476866 [GRCh38]
Chr22:36872913 [GRCh37]
Chr22:22q12.3
likely benign
GRCh37/hg19 22q12.3(chr22:36831022-37009180)x4 copy number gain not provided [RCV000848098] Chr22:36831022..37009180 [GRCh37]
Chr22:22q12.3
uncertain significance
GRCh37/hg19 22q12.3(chr22:36831984-37009111)x3 copy number gain not provided [RCV000849512] Chr22:36831984..37009111 [GRCh37]
Chr22:22q12.3
uncertain significance
GRCh37/hg19 22q12.3(chr22:36704833-36911784)x3 copy number gain not provided [RCV000849820] Chr22:36704833..36911784 [GRCh37]
Chr22:22q12.3
uncertain significance
GRCh37/hg19 22q12.3(chr22:36704833-36968932)x3 copy number gain not provided [RCV000847397] Chr22:36704833..36968932 [GRCh37]
Chr22:22q12.3
uncertain significance
GRCh37/hg19 22q12.2-13.33(chr22:30654764-51197838)x3 copy number gain not provided [RCV001007181] Chr22:30654764..51197838 [GRCh37]
Chr22:22q12.2-13.33
pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16888899-51197838)x3 copy number gain not provided [RCV000846344] Chr22:16888899..51197838 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
GRCh37/hg19 22q12.3(chr22:36746223-36971882)x3 copy number gain not provided [RCV000846041] Chr22:36746223..36971882 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.156A>G (p.Ile52Met) single nucleotide variant TXN2-related disorder [RCV003950725]|not provided [RCV000910531] Chr22:36480682 [GRCh38]
Chr22:36876729 [GRCh37]
Chr22:22q12.3
benign|likely benign
NM_012473.4(TXN2):c.294G>A (p.Pro98=) single nucleotide variant Combined oxidative phosphorylation deficiency 29 [RCV002502962]|TXN2-related disorder [RCV003935835]|not provided [RCV000954533] Chr22:36476826 [GRCh38]
Chr22:36872873 [GRCh37]
Chr22:22q12.3
benign|likely benign
NM_012473.4(TXN2):c.345G>A (p.Lys115=) single nucleotide variant not provided [RCV000922115] Chr22:36476775 [GRCh38]
Chr22:36872822 [GRCh37]
Chr22:22q12.3
likely benign
NM_012473.4(TXN2):c.469T>C (p.Leu157=) single nucleotide variant not provided [RCV000933767] Chr22:36467836 [GRCh38]
Chr22:36863883 [GRCh37]
Chr22:22q12.3
likely benign
NM_012473.4(TXN2):c.387+30A>C single nucleotide variant Combined oxidative phosphorylation deficiency 29 [RCV002243424]|not provided [RCV001688688] Chr22:36476703 [GRCh38]
Chr22:36872750 [GRCh37]
Chr22:22q12.3
benign
NM_012473.4(TXN2):c.*173AG[1] microsatellite not provided [RCV001595875] Chr22:36467628..36467629 [GRCh38]
Chr22:36863675..36863676 [GRCh37]
Chr22:22q12.3
benign
NC_000022.11:g.36481648_36481649insGA insertion not provided [RCV001720402] Chr22:36481648..36481649 [GRCh38]
Chr22:36877695..36877696 [GRCh37]
Chr22:22q12.3
benign
NM_012473.4(TXN2):c.388-99C>A single nucleotide variant not provided [RCV001680639] Chr22:36468016 [GRCh38]
Chr22:36864063 [GRCh37]
Chr22:22q12.3
benign
GRCh37/hg19 22q11.1-13.33(chr22:16197005-51224252)x3 copy number gain See cases [RCV001263056] Chr22:16197005..51224252 [GRCh37]
Chr22:22q11.1-13.33
pathogenic
NM_012473.4(TXN2):c.376A>G (p.Ile126Val) single nucleotide variant Combined oxidative phosphorylation deficiency 29 [RCV001332968]|not provided [RCV003546704]|not specified [RCV004035755] Chr22:36476744 [GRCh38]
Chr22:36872791 [GRCh37]
Chr22:22q12.3
uncertain significance
GRCh37/hg19 22q12.3(chr22:36831028-37009180)x3 copy number gain not provided [RCV001825267] Chr22:36831028..37009180 [GRCh37]
Chr22:22q12.3
not provided
NC_000022.10:g.(?_36876602)_(36876884_?)dup duplication not provided [RCV002003281] Chr22:36876602..36876884 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.334G>C (p.Val112Leu) single nucleotide variant not provided [RCV002001306] Chr22:36476786 [GRCh38]
Chr22:36872833 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.238C>T (p.Pro80Ser) single nucleotide variant not provided [RCV001932253] Chr22:36480600 [GRCh38]
Chr22:36876647 [GRCh37]
Chr22:22q12.3
uncertain significance
NC_000022.11:g.36481648_36481649insGGGA insertion not provided [RCV003437552] Chr22:36481648..36481649 [GRCh38]
Chr22:36877695..36877696 [GRCh37]
Chr22:22q12.3
benign
NM_012473.4(TXN2):c.429C>T (p.Asp143=) single nucleotide variant not provided [RCV003116908] Chr22:36467876 [GRCh38]
Chr22:36863923 [GRCh37]
Chr22:22q12.3
likely benign
NC_000022.10:g.(?_35776672)_(42486826_?)dup duplication Adenylosuccinate lyase deficiency [RCV003119093] Chr22:35776672..42486826 [GRCh37]
Chr22:22q12.3-13.2
uncertain significance
GRCh37/hg19 22q12.3(chr22:36693899-36963432)x3 copy number gain not provided [RCV002472427] Chr22:36693899..36963432 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.140A>C (p.Asn47Thr) single nucleotide variant not specified [RCV004159219] Chr22:36480698 [GRCh38]
Chr22:36876745 [GRCh37]
Chr22:22q12.3
uncertain significance
GRCh37/hg19 22q12.3(chr22:36751242-36971521)x3 copy number gain not provided [RCV002473502] Chr22:36751242..36971521 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.313G>T (p.Ala105Ser) single nucleotide variant not specified [RCV004245687] Chr22:36476807 [GRCh38]
Chr22:36872854 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.494T>C (p.Ile165Thr) single nucleotide variant not provided [RCV003073693]|not specified [RCV004070222] Chr22:36467811 [GRCh38]
Chr22:36863858 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.119G>C (p.Gly40Ala) single nucleotide variant not provided [RCV003015214] Chr22:36480719 [GRCh38]
Chr22:36876766 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.480C>T (p.Phe160=) single nucleotide variant not provided [RCV002726237] Chr22:36467825 [GRCh38]
Chr22:36863872 [GRCh37]
Chr22:22q12.3
likely benign
NM_012473.4(TXN2):c.129_130delinsAC (p.Val44Leu) indel not provided [RCV002622019] Chr22:36480708..36480709 [GRCh38]
Chr22:36876755..36876756 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.157T>C (p.Tyr53His) single nucleotide variant not provided [RCV002690986] Chr22:36480681 [GRCh38]
Chr22:36876728 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.264-10_264-9delinsCT indel not provided [RCV002571739] Chr22:36476865..36476866 [GRCh38]
Chr22:36872912..36872913 [GRCh37]
Chr22:22q12.3
likely benign
NM_012473.4(TXN2):c.30C>G (p.Phe10Leu) single nucleotide variant not provided [RCV002871285] Chr22:36480808 [GRCh38]
Chr22:36876855 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.293C>T (p.Pro98Leu) single nucleotide variant not provided [RCV003080535] Chr22:36476827 [GRCh38]
Chr22:36872874 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.496G>A (p.Gly166Ser) single nucleotide variant not specified [RCV004148357] Chr22:36467809 [GRCh38]
Chr22:36863856 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.50G>C (p.Arg17Thr) single nucleotide variant not provided [RCV002851183] Chr22:36480788 [GRCh38]
Chr22:36876835 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.388-15G>A single nucleotide variant not provided [RCV002663330] Chr22:36467932 [GRCh38]
Chr22:36863979 [GRCh37]
Chr22:22q12.3
likely benign
NM_012473.4(TXN2):c.242T>A (p.Val81Glu) single nucleotide variant not specified [RCV004142468] Chr22:36480596 [GRCh38]
Chr22:36876643 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.149G>A (p.Arg50Gln) single nucleotide variant not provided [RCV002628016] Chr22:36480689 [GRCh38]
Chr22:36876736 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.86C>G (p.Ser29Cys) single nucleotide variant not provided [RCV003108163]|not specified [RCV004083841] Chr22:36480752 [GRCh38]
Chr22:36876799 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.307A>G (p.Met103Val) single nucleotide variant not provided [RCV002582666] Chr22:36476813 [GRCh38]
Chr22:36872860 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.223G>A (p.Val75Ile) single nucleotide variant not provided [RCV002587593] Chr22:36480615 [GRCh38]
Chr22:36876662 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.324C>T (p.His108=) single nucleotide variant not provided [RCV002587315] Chr22:36476796 [GRCh38]
Chr22:36872843 [GRCh37]
Chr22:22q12.3
likely benign
NM_012473.4(TXN2):c.303G>A (p.Glu101=) single nucleotide variant not provided [RCV002604984] Chr22:36476817 [GRCh38]
Chr22:36872864 [GRCh37]
Chr22:22q12.3
likely benign
NM_012473.4(TXN2):c.53A>G (p.Lys18Arg) single nucleotide variant not specified [RCV004281269] Chr22:36480785 [GRCh38]
Chr22:36876832 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.388-1G>A single nucleotide variant not specified [RCV003324163] Chr22:36467918 [GRCh38]
Chr22:36863965 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.261A>C (p.Ala87=) single nucleotide variant not provided [RCV003334246] Chr22:36480577 [GRCh38]
Chr22:36876624 [GRCh37]
Chr22:22q12.3
likely benign
NC_000022.10:g.(?_36863092)_(36877688_?)dup duplication not specified [RCV003388464] Chr22:36863092..36877688 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.387+8T>C single nucleotide variant not provided [RCV003827673] Chr22:36476725 [GRCh38]
Chr22:36872772 [GRCh37]
Chr22:22q12.3
likely benign
NM_012473.4(TXN2):c.264-11C>T single nucleotide variant not provided [RCV003881329] Chr22:36476867 [GRCh38]
Chr22:36872914 [GRCh37]
Chr22:22q12.3
likely benign
NM_012473.4(TXN2):c.38C>G (p.Ser13Cys) single nucleotide variant not provided [RCV003548535] Chr22:36480800 [GRCh38]
Chr22:36876847 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.165G>C (p.Thr55=) single nucleotide variant TXN2-related disorder [RCV003956532]|not provided [RCV003726963] Chr22:36480673 [GRCh38]
Chr22:36876720 [GRCh37]
Chr22:22q12.3
likely benign
NM_012473.4(TXN2):c.108A>G (p.Gln36=) single nucleotide variant not provided [RCV003819602] Chr22:36480730 [GRCh38]
Chr22:36876777 [GRCh37]
Chr22:22q12.3
likely benign
NM_012473.4(TXN2):c.501A>C (p.Ter167Cys) single nucleotide variant not provided [RCV003710797] Chr22:36467804 [GRCh38]
Chr22:36863851 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.344A>G (p.Lys115Arg) single nucleotide variant not specified [RCV004483985] Chr22:36476776 [GRCh38]
Chr22:36872823 [GRCh37]
Chr22:22q12.3
uncertain significance
NC_000022.10:g.(?_36701956)_(36876884_?)dup duplication not provided [RCV004579251] Chr22:36701956..36876884 [GRCh37]
Chr22:22q12.3
uncertain significance
NC_000022.10:g.(?_36863851)_(36876884_?)dup duplication not provided [RCV004579283] Chr22:36863851..36876884 [GRCh37]
Chr22:22q12.3
uncertain significance
NC_000022.10:g.(?_36694945)_(36876884_?)dup duplication not provided [RCV004579262] Chr22:36694945..36876884 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.121G>A (p.Gly41Ser) single nucleotide variant not specified [RCV004683097] Chr22:36480717 [GRCh38]
Chr22:36876764 [GRCh37]
Chr22:22q12.3
uncertain significance
NM_012473.4(TXN2):c.445G>T (p.Val149Leu) single nucleotide variant not specified [RCV004683098] Chr22:36467860 [GRCh38]
Chr22:36863907 [GRCh37]
Chr22:22q12.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2202
Count of miRNA genes:769
Interacting mature miRNAs:884
Transcripts:ENST00000216185, ENST00000403313, ENST00000411915, ENST00000416967, ENST00000487725
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581529BP71_HBlood pressure QTL 71 (human)20.001Blood pressurepulse pressure221109496637094966Human
406924771GWAS573747_H6-bromotryptophan measurement QTL GWAS573747 (human)2e-126-bromotryptophan measurement223647168936471690Human
2289428BW313_HBody weight QTL 313 (human)2.090.0015Body weightBMI221134428437344284Human
407329466GWAS978442_H6-bromotryptophan measurement QTL GWAS978442 (human)3e-146-bromotryptophan measurement223647855236478553Human

Markers in Region
RH75085  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372236,863,454 - 36,863,682UniSTSGRCh37
Build 362235,193,400 - 35,193,628RGDNCBI36
Celera2220,665,599 - 20,665,827RGD
Cytogenetic Map22q13.1UniSTS
HuRef2219,831,688 - 19,831,916UniSTS
RH70707  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372236,863,693 - 36,863,848UniSTSGRCh37
Build 362235,193,639 - 35,193,794RGDNCBI36
Celera2220,665,838 - 20,665,993RGD
Cytogenetic Map22q13.1UniSTS
HuRef2219,831,927 - 19,832,082UniSTS
GeneMap99-GB4 RH Map22111.71UniSTS
PMC193924P2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372236,863,620 - 36,863,858UniSTSGRCh37
Build 362235,193,566 - 35,193,804RGDNCBI36
Celera2220,665,765 - 20,666,003RGD
Cytogenetic Map22q13.1UniSTS
HuRef2219,831,854 - 19,832,092UniSTS
TXN2_1115  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372236,862,993 - 36,863,808UniSTSGRCh37
Build 362235,192,939 - 35,193,754RGDNCBI36
Celera2220,665,138 - 20,665,953RGD
HuRef2219,831,227 - 19,832,042UniSTS
RH68054  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372236,863,099 - 36,863,342UniSTSGRCh37
Build 362235,193,045 - 35,193,288RGDNCBI36
Celera2220,665,244 - 20,665,487RGD
Cytogenetic Map22q13.1UniSTS
HuRef2219,831,333 - 19,831,576UniSTS
GeneMap99-GB4 RH Map22112.0UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5q14.2UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map16p13.3UniSTS
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Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q16.1-q16.3UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map7q31.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3q25.2UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map22q12-q13UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map1q24.3UniSTS
Cytogenetic Map9q33.1UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2p16.2UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_046718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_012473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006724226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011530111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054325489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF276920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF480262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK130187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL022313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR456601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR541896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR541917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX533493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U78678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000216185   ⟹   ENSP00000216185
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2236,467,046 - 36,481,640 (-)Ensembl
Ensembl Acc Id: ENST00000403313   ⟹   ENSP00000385393
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2236,467,591 - 36,481,340 (-)Ensembl
Ensembl Acc Id: ENST00000411915   ⟹   ENSP00000409407
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2236,467,884 - 36,481,596 (-)Ensembl
Ensembl Acc Id: ENST00000416967   ⟹   ENSP00000469160
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2236,467,046 - 36,481,634 (-)Ensembl
Ensembl Acc Id: ENST00000487725
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2236,467,549 - 36,481,632 (-)Ensembl
RefSeq Acc Id: NM_012473   ⟹   NP_036605
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382236,467,046 - 36,481,640 (-)NCBI
GRCh372236,863,083 - 36,878,072 (-)NCBI
Build 362235,193,039 - 35,207,633 (-)NCBI Archive
HuRef2219,831,327 - 19,845,504 (-)ENTREZGENE
CHM1_12236,822,047 - 36,836,640 (-)NCBI
T2T-CHM13v2.02236,927,219 - 36,941,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006724226   ⟹   XP_006724289
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382236,467,046 - 36,481,640 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054325489   ⟹   XP_054181464
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02236,927,219 - 36,941,742 (-)NCBI
RefSeq Acc Id: NP_036605   ⟸   NM_012473
- Peptide Label: precursor
- UniProtKB: Q6FH60 (UniProtKB/Swiss-Prot),   Q5JZA0 (UniProtKB/Swiss-Prot),   Q9UH29 (UniProtKB/Swiss-Prot),   Q99757 (UniProtKB/Swiss-Prot),   B4DX69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006724289   ⟸   XM_006724226
- Peptide Label: isoform X1
- UniProtKB: Q6FH60 (UniProtKB/Swiss-Prot),   Q5JZA0 (UniProtKB/Swiss-Prot),   Q9UH29 (UniProtKB/Swiss-Prot),   Q99757 (UniProtKB/Swiss-Prot),   B4DX69 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000409407   ⟸   ENST00000411915
Ensembl Acc Id: ENSP00000216185   ⟸   ENST00000216185
Ensembl Acc Id: ENSP00000469160   ⟸   ENST00000416967
Ensembl Acc Id: ENSP00000385393   ⟸   ENST00000403313
RefSeq Acc Id: XP_054181464   ⟸   XM_054325489
- Peptide Label: isoform X1
- UniProtKB: Q9UH29 (UniProtKB/Swiss-Prot),   Q99757 (UniProtKB/Swiss-Prot),   Q6FH60 (UniProtKB/Swiss-Prot),   Q5JZA0 (UniProtKB/Swiss-Prot)
Protein Domains
Thioredoxin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99757-F1-model_v2 AlphaFold Q99757 1-166 view protein structure

Promoters
RGD ID:6814707
Promoter ID:HG_XEF:5252
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:NM_001031410,   NM_205641
Position:
Human AssemblyChrPosition (strand)Source
Build 362235,206,111 - 35,206,611 (-)MPROMDB
RGD ID:6800462
Promoter ID:HG_KWN:42608
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000403313,   OTTHUMT00000319016,   OTTHUMT00000319018,   OTTHUMT00000319019,   UC003APL.1
Position:
Human AssemblyChrPosition (strand)Source
Build 362235,207,496 - 35,208,347 (-)MPROMDB
RGD ID:6852658
Promoter ID:EP74141
Type:multiple initiation site
Name:HS_TXN2
Description:Thioredoxin 2.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 362235,207,633 - 35,207,693EPD
RGD ID:13603896
Promoter ID:EPDNEW_H28132
Type:initiation region
Name:TXN2_1
Description:thioredoxin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H28133  EPDNEW_H28152  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382236,481,617 - 36,481,677EPDNEW
RGD ID:13603898
Promoter ID:EPDNEW_H28133
Type:initiation region
Name:TXN2_2
Description:thioredoxin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H28132  EPDNEW_H28152  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382236,481,967 - 36,482,027EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:17772 AgrOrtholog
COSMIC TXN2 COSMIC
Ensembl Genes ENSG00000100348 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000216185 ENTREZGENE
  ENST00000216185.7 UniProtKB/Swiss-Prot
  ENST00000403313 ENTREZGENE
  ENST00000403313.5 UniProtKB/Swiss-Prot
  ENST00000411915.1 UniProtKB/TrEMBL
  ENST00000416967.1 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000100348 GTEx
HGNC ID HGNC:17772 ENTREZGENE
Human Proteome Map TXN2 Human Proteome Map
InterPro Thioredoxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:25828 UniProtKB/Swiss-Prot
NCBI Gene 25828 ENTREZGENE
OMIM 609063 OMIM
PANTHER THIOREDOXIN, MITOCHONDRIAL UniProtKB/Swiss-Prot
  THIOREDOXIN, MITOCHONDRIAL UniProtKB/Swiss-Prot
  THIOREDOXIN, MITOCHONDRIAL UniProtKB/TrEMBL
  THIOREDOXIN, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Thioredoxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA38245 PharmGKB
PRINTS THIOREDOXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE THIOREDOXIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  THIOREDOXIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B4DX69 ENTREZGENE, UniProtKB/TrEMBL
  F8WDN2_HUMAN UniProtKB/TrEMBL
  M0QXH0_HUMAN UniProtKB/TrEMBL
  Q5JZA0 ENTREZGENE
  Q6FH60 ENTREZGENE
  Q99757 ENTREZGENE
  Q9UH29 ENTREZGENE
  THIOM_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q5JZA0 UniProtKB/Swiss-Prot
  Q6FH60 UniProtKB/Swiss-Prot
  Q9UH29 UniProtKB/Swiss-Prot