Cabin1 (calcineurin binding protein 1) - Rat Genome Database

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Gene: Cabin1 (calcineurin binding protein 1) Mus musculus
Analyze
Symbol: Cabin1
Name: calcineurin binding protein 1
RGD ID: 736812
MGI Page MGI
Description: Predicted to enable protein domain specific binding activity; protein phosphatase 2B binding activity; and protein phosphatase inhibitor activity. Predicted to contribute to nucleosome binding activity. Predicted to be involved in negative regulation of apoptotic process and nucleosome assembly. Predicted to act upstream of or within signal transduction. Predicted to be located in aggresome; cytosol; and nucleoplasm. Predicted to be active in nucleus. Is expressed in heart. Human ortholog(s) of this gene implicated in ovarian carcinoma. Orthologous to human CABIN1 (calcineurin binding protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A330070M20Rik; C; Cain; calcineurin inhibitor; calcineurin-binding protein cabin-1; P; Ppp3in; protein phosphatase 3 inhibitor
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391075,481,944 - 75,600,194 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1075,481,946 - 75,600,175 (-)EnsemblGRCm39 Ensembl
GRCm381075,646,110 - 75,764,357 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1075,646,112 - 75,764,341 (-)EnsemblGRCm38mm10GRCm38
MGSCv371075,108,855 - 75,227,102 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361075,089,828 - 75,208,073 (-)NCBIMGSCv36mm8
Celera1076,690,803 - 76,809,131 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
aggresome  (ISO)
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. DNA hypermethylation, Her-2/neu overexpression and p53 mutations in ovarian carcinoma. Feng Q, etal., Gynecol Oncol. 2008 Nov;111(2):320-9. doi: 10.1016/j.ygyno.2008.07.036. Epub 2008 Aug 30.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Regulation of inflammatory responses and fibroblast-like synoviocyte apoptosis by calcineurin-binding protein 1 in mice with collagen-induced arthritis. Yi JK, etal., Arthritis Rheum. 2012 Jul;64(7):2191-200. doi: 10.1002/art.34398.
Additional References at PubMed
PMID:8889548   PMID:9655484   PMID:10349636   PMID:10613844   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11714752   PMID:12114545   PMID:12477932  
PMID:12520002   PMID:14610273   PMID:14691545   PMID:15902271   PMID:16141072   PMID:16141073   PMID:17198697   PMID:17967808   PMID:18799693   PMID:19668210   PMID:19717561   PMID:20096683  
PMID:20362541   PMID:20362542   PMID:21267068   PMID:21414300   PMID:21873635   PMID:28462391   PMID:28671696   PMID:30595499   PMID:33835048   PMID:34503492   PMID:35112132  


Genomics

Comparative Map Data
Cabin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391075,481,944 - 75,600,194 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1075,481,946 - 75,600,175 (-)EnsemblGRCm39 Ensembl
GRCm381075,646,110 - 75,764,357 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1075,646,112 - 75,764,341 (-)EnsemblGRCm38mm10GRCm38
MGSCv371075,108,855 - 75,227,102 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361075,089,828 - 75,208,073 (-)NCBIMGSCv36mm8
Celera1076,690,803 - 76,809,131 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.56NCBI
CABIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382224,011,304 - 24,178,628 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2224,011,192 - 24,178,628 (+)EnsemblGRCh38hg38GRCh38
GRCh372224,407,754 - 24,574,596 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362222,737,765 - 22,904,596 (+)NCBINCBI36Build 36hg18NCBI36
Build 342222,732,318 - 22,899,150NCBI
Celera228,207,658 - 8,374,995 (+)NCBICelera
Cytogenetic Map22q11.23NCBI
HuRef227,355,977 - 7,523,706 (+)NCBIHuRef
CHM1_12224,366,024 - 24,533,337 (+)NCBICHM1_1
T2T-CHM13v2.02224,472,930 - 24,640,242 (+)NCBIT2T-CHM13v2.0
Cabin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82012,892,750 - 13,014,801 (+)NCBIGRCr8
mRatBN7.22012,893,314 - 13,015,357 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2012,893,358 - 13,015,357 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2013,599,937 - 13,721,941 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02012,960,879 - 13,082,888 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02013,432,984 - 13,555,133 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02013,836,032 - 13,963,003 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2013,836,030 - 13,963,003 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02016,025,717 - 16,151,225 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02015,924,052 - 15,942,759 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42013,444,801 - 13,569,453 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12013,445,046 - 13,569,680 (-)NCBI
Celera2014,383,605 - 14,503,982 (+)NCBICelera
Cytogenetic Map20p12NCBI
Cabin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554558,162,315 - 8,312,909 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554558,162,365 - 8,312,932 (-)NCBIChiLan1.0ChiLan1.0
CABIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22333,795,295 - 33,963,647 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12236,529,019 - 36,697,375 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0224,816,411 - 4,984,760 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12222,902,776 - 23,070,598 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2222,927,572 - 23,070,165 (+)Ensemblpanpan1.1panPan2
CABIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12628,366,264 - 28,517,570 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2628,366,265 - 28,517,656 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2627,440,625 - 27,591,723 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02629,770,268 - 29,921,946 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2629,770,270 - 29,921,917 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12627,854,246 - 28,005,988 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02627,470,762 - 27,622,599 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02628,460,896 - 28,611,816 (-)NCBIUU_Cfam_GSD_1.0
Cabin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118141,723,046 - 141,863,600 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936619890,299 - 1,030,899 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936619890,474 - 1,030,914 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CABIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1449,686,196 - 49,787,688 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11449,686,196 - 49,787,723 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,128,158 - 53,229,937 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CABIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1197,127,370 - 7,289,054 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl197,127,401 - 7,289,050 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366610073,032 - 234,603 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cabin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474710,110,370 - 10,257,276 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474710,110,476 - 10,257,165 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cabin1
3214 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:199
Count of miRNA genes:161
Interacting mature miRNAs:177
Transcripts:ENSMUST00000001712
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse

Markers in Region
MHAa38d3.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381075,721,972 - 75,722,042UniSTSGRCm38
MGSCv371075,184,717 - 75,184,787UniSTSGRCm37
Celera1076,766,762 - 76,766,832UniSTS
Cytogenetic Map10C1UniSTS
cM Map1040.7UniSTS
Whitehead_YAC10 UniSTS
D10Mit186  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381075,681,135 - 75,681,262UniSTSGRCm38
MGSCv371075,143,880 - 75,144,007UniSTSGRCm37
Celera1076,725,825 - 76,725,952UniSTS
Cytogenetic Map10C1UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1036.1UniSTS
D10Jhu70  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381075,743,211 - 75,743,506UniSTSGRCm38
MGSCv371075,205,956 - 75,206,251UniSTSGRCm37
Celera1076,787,985 - 76,788,280UniSTS
Cytogenetic Map10C1UniSTS
cM Map1040.7UniSTS
Cabin1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10C1UniSTS
cM Map1040.7UniSTS
UniSTS:236393  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381075,746,483 - 75,746,700UniSTSGRCm38
MGSCv371075,209,228 - 75,209,445UniSTSGRCm37
Celera1076,791,257 - 76,791,474UniSTS
Cytogenetic Map10C1UniSTS
cM Map1040.7UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_172549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_380334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC009361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC087540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC142499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ714836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU705499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN722898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV884170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ541075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000001712   ⟹   ENSMUSP00000001712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,481,946 - 75,600,150 (-)Ensembl
GRCm38.p6 Ensembl1075,646,112 - 75,764,316 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,493,630 - 75,503,928 (-)Ensembl
GRCm38.p6 Ensembl1075,657,796 - 75,668,094 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217810   ⟹   ENSMUSP00000152043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,552,463 - 75,569,605 (-)Ensembl
GRCm38.p6 Ensembl1075,716,629 - 75,733,771 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218469   ⟹   ENSMUSP00000151933
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,590,687 - 75,600,104 (-)Ensembl
GRCm38.p6 Ensembl1075,754,853 - 75,764,270 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,597,081 - 75,600,175 (-)Ensembl
GRCm38.p6 Ensembl1075,761,247 - 75,764,341 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218486
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,520,209 - 75,536,209 (-)Ensembl
GRCm38.p6 Ensembl1075,684,375 - 75,700,375 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218790   ⟹   ENSMUSP00000151436
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,557,153 - 75,562,784 (-)Ensembl
GRCm38.p6 Ensembl1075,721,319 - 75,726,950 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218814
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,493,121 - 75,503,666 (-)Ensembl
GRCm38.p6 Ensembl1075,657,287 - 75,667,832 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218878   ⟹   ENSMUSP00000151485
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,557,287 - 75,568,245 (-)Ensembl
GRCm38.p6 Ensembl1075,721,453 - 75,732,411 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218951
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,585,900 - 75,587,652 (-)Ensembl
GRCm38.p6 Ensembl1075,750,066 - 75,751,818 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219682
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,551,528 - 75,561,068 (-)Ensembl
GRCm38.p6 Ensembl1075,715,694 - 75,725,234 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219806   ⟹   ENSMUSP00000151879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,530,629 - 75,551,478 (-)Ensembl
GRCm38.p6 Ensembl1075,694,795 - 75,715,644 (-)Ensembl
RefSeq Acc Id: ENSMUST00000220009
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,557,182 - 75,568,454 (-)Ensembl
GRCm38.p6 Ensembl1075,721,348 - 75,732,620 (-)Ensembl
RefSeq Acc Id: NM_172549   ⟹   NP_766137
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391075,481,944 - 75,600,191 (-)NCBI
GRCm381075,646,110 - 75,764,357 (-)NCBI
MGSCv371075,108,855 - 75,227,102 (-)RGD
Celera1076,690,803 - 76,809,131 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513019   ⟹   XP_006513082
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391075,481,945 - 75,600,186 (-)NCBI
GRCm381075,646,111 - 75,764,354 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513020   ⟹   XP_006513083
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391075,481,945 - 75,600,189 (-)NCBI
GRCm381075,646,111 - 75,764,354 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513021   ⟹   XP_006513084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391075,481,945 - 75,581,231 (-)NCBI
GRCm381075,646,111 - 75,747,924 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513022   ⟹   XP_006513085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391075,481,945 - 75,562,853 (-)NCBI
GRCm381075,646,111 - 75,733,776 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001779404
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391075,481,945 - 75,600,189 (-)NCBI
GRCm381075,646,111 - 75,764,355 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001779405
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391075,494,496 - 75,600,194 (-)NCBI
GRCm381075,658,662 - 75,764,357 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001779406
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391075,557,287 - 75,600,194 (-)NCBI
GRCm381075,721,453 - 75,764,357 (-)NCBI
Sequence:
RefSeq Acc Id: XR_380334
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391075,535,866 - 75,600,194 (-)NCBI
GRCm381075,700,073 - 75,764,357 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_766137   ⟸   NM_172549
- UniProtKB: G3X8Q1 (UniProtKB/TrEMBL),   B9EKC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513083   ⟸   XM_006513020
- Peptide Label: isoform X2
- UniProtKB: B9EKC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513082   ⟸   XM_006513019
- Peptide Label: isoform X1
- UniProtKB: G3X8Q1 (UniProtKB/TrEMBL),   B9EKC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513084   ⟸   XM_006513021
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006513085   ⟸   XM_006513022
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSMUSP00000151436   ⟸   ENSMUST00000218790
RefSeq Acc Id: ENSMUSP00000151485   ⟸   ENSMUST00000218878
RefSeq Acc Id: ENSMUSP00000151933   ⟸   ENSMUST00000218469
RefSeq Acc Id: ENSMUSP00000152043   ⟸   ENSMUST00000217810
RefSeq Acc Id: ENSMUSP00000001712   ⟸   ENSMUST00000001712
RefSeq Acc Id: ENSMUSP00000151879   ⟸   ENSMUST00000219806
Protein Domains
Calcineurin-binding protein cabin-1 MEF2-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3X8Q1-F1-model_v2 AlphaFold G3X8Q1 1-2187 view protein structure

Promoters
RGD ID:6819075
Promoter ID:MM_KWN:4563
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4,   Spleen
Transcripts:UC007FQU.1,   UC007FQV.1,   UC007FQY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361075,130,296 - 75,131,057 (-)MPROMDB
RGD ID:6819074
Promoter ID:MM_KWN:4565
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:UC007FQZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361075,196,366 - 75,196,866 (-)MPROMDB
RGD ID:6819072
Promoter ID:MM_KWN:4566
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000092412,   NM_172549
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361075,226,861 - 75,227,362 (-)MPROMDB
RGD ID:8672326
Promoter ID:EPDNEW_M14193
Type:multiple initiation site
Name:Cabin1_2
Description:Mus musculus calcineurin binding protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14194  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381075,667,588 - 75,667,648EPDNEW
RGD ID:8672328
Promoter ID:EPDNEW_M14194
Type:initiation region
Name:Cabin1_1
Description:Mus musculus calcineurin binding protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14193  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381075,764,302 - 75,764,362EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1298375 AgrOrtholog
Ensembl Genes ENSMUSG00000020196 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000001712 ENTREZGENE
  ENSMUST00000001712.8 UniProtKB/TrEMBL
  ENSMUST00000217810.2 UniProtKB/TrEMBL
  ENSMUST00000218469.2 UniProtKB/TrEMBL
  ENSMUST00000218790.2 UniProtKB/TrEMBL
  ENSMUST00000218878.2 UniProtKB/TrEMBL
  ENSMUST00000219806.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro Hir3/CABIN1 UniProtKB/TrEMBL
  MEF2_binding UniProtKB/TrEMBL
  TPR-like_helical UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
KEGG Report mmu:104248 UniProtKB/TrEMBL
MGD MGI:1298375 ENTREZGENE
NCBI Gene 104248 ENTREZGENE
PANTHER CALCINEURIN-BINDING PROTEIN CABIN-1 UniProtKB/TrEMBL
  PTHR15502 UniProtKB/TrEMBL
Pfam MEF2_binding UniProtKB/TrEMBL
PhenoGen Cabin1 PhenoGen
PROSITE TPR UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A1W2P6X4_MOUSE UniProtKB/TrEMBL
  A0A1W2P755_MOUSE UniProtKB/TrEMBL
  A0A1W2P819_MOUSE UniProtKB/TrEMBL
  A0A1W2P8A1_MOUSE UniProtKB/TrEMBL
  A0A1W2P8C4_MOUSE UniProtKB/TrEMBL
  B9EKC5 ENTREZGENE, UniProtKB/TrEMBL
  G3X8Q1 ENTREZGENE, UniProtKB/TrEMBL
  Q3TC43_MOUSE UniProtKB/TrEMBL
  Q3TDW4_MOUSE UniProtKB/TrEMBL
  Q3TGB0_MOUSE UniProtKB/TrEMBL
  Q6PFH4_MOUSE UniProtKB/TrEMBL
  Q6PH97_MOUSE UniProtKB/TrEMBL
  Q80X22_MOUSE UniProtKB/TrEMBL
  Q8CGG3_MOUSE UniProtKB/TrEMBL