Rps25 (ribosomal protein S25) - Rat Genome Database

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Gene: Rps25 (ribosomal protein S25) Mus musculus
Analyze
Symbol: Rps25
Name: ribosomal protein S25
RGD ID: 736674
MGI Page MGI
Description: A structural constituent of ribosome. Predicted to be involved in rRNA processing and ribosomal small subunit assembly. Part of cytosolic small ribosomal subunit. Is active in synapse. Is expressed in central nervous system and retina. Orthologous to human RPS25 (ribosomal protein S25).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 2810009D21Rik; 40S ribosomal protein S25; small ribosomal subunit protein eS25
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm16490   Gm46037   Rps25-ps1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,319,011 - 44,321,703 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,318,436 - 44,321,724 (+)EnsemblGRCm39 Ensembl
GRCm38944,407,714 - 44,410,406 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,407,139 - 44,410,427 (+)EnsemblGRCm38mm10GRCm38
MGSCv37944,215,797 - 44,218,489 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,158,709 - 44,161,401 (+)NCBIMGSCv36mm8
Celera941,655,304 - 41,658,010 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,6-dinitrotoluene  (ISO)
2-naphthylamine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
calcium silicate  (EXP)
CGP 52608  (ISO)
chromium(6+)  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (EXP)
deguelin  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fenpyroximate  (ISO)
fipronil  (ISO)
folic acid  (EXP)
genistein  (ISO)
glafenine  (ISO)
glyphosate  (EXP)
ivermectin  (ISO)
ketoconazole  (ISO)
methimazole  (ISO)
nicotine  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
picoxystrobin  (ISO)
pyrimidifen  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
sulfadimethoxine  (ISO)
tebufenpyrad  (ISO)
tetrachloromethane  (ISO)
tolcapone  (ISO)
triadimefon  (ISO)
trichloroethene  (ISO)
tungsten  (EXP)
valproic acid  (EXP)
vancomycin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7490078   PMID:7671812   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15289901   PMID:15489334  
PMID:16141072   PMID:16141073   PMID:16452087   PMID:16602821   PMID:18495661   PMID:18799693   PMID:21267068   PMID:21529712   PMID:21677750   PMID:21873635   PMID:22794259   PMID:24457600  
PMID:25901680   PMID:26167872   PMID:27113764   PMID:28378742   PMID:30409884   PMID:30550785   PMID:30713523   PMID:31162944   PMID:32325033   PMID:32434143   PMID:34175335   PMID:36108743  
PMID:36517592  


Genomics

Comparative Map Data
Rps25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,319,011 - 44,321,703 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,318,436 - 44,321,724 (+)EnsemblGRCm39 Ensembl
GRCm38944,407,714 - 44,410,406 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,407,139 - 44,410,427 (+)EnsemblGRCm38mm10GRCm38
MGSCv37944,215,797 - 44,218,489 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,158,709 - 44,161,401 (+)NCBIMGSCv36mm8
Celera941,655,304 - 41,658,010 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
RPS25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811119,015,717 - 119,018,343 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11119,015,712 - 119,018,691 (-)EnsemblGRCh38hg38GRCh38
GRCh3711118,886,427 - 118,889,053 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,391,632 - 118,394,267 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411118,391,634 - 118,394,267NCBI
Celera11116,043,558 - 116,046,193 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,826,081 - 114,828,716 (-)NCBIHuRef
CHM1_111118,772,705 - 118,775,340 (-)NCBICHM1_1
T2T-CHM13v2.011119,036,078 - 119,038,704 (-)NCBIT2T-CHM13v2.0
Rps25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,630,333 - 53,632,810 (+)NCBIGRCr8
mRatBN7.2844,733,623 - 44,735,999 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl844,733,029 - 44,737,271 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4126,404,374 - 126,404,839 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04122,179,129 - 122,179,594 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,803,373 - 120,803,838 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,727,346 - 48,729,722 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,727,618 - 48,729,580 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,346,317 - 47,348,693 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,374,303 - 47,376,679 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,383,068 - 47,385,445 (+)NCBI
Celera844,319,737 - 44,322,113 (+)NCBICelera
Cytogenetic Map8q22NCBI
Rps25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,126,775 - 20,128,748 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,126,769 - 20,129,071 (-)NCBIChiLan1.0ChiLan1.0
RPS25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,720,474 - 119,723,177 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,824,032 - 120,826,939 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,853,891 - 113,856,636 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,784,075 - 117,787,039 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,784,075 - 117,787,104 (-)Ensemblpanpan1.1panPan2
RPS25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,833,804 - 14,836,376 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl514,833,918 - 14,836,749 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,886,723 - 14,889,292 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0514,777,076 - 14,779,647 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl514,777,187 - 14,780,020 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1514,915,323 - 14,917,891 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0514,819,071 - 14,821,642 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0514,859,467 - 14,862,033 (+)NCBIUU_Cfam_GSD_1.0
Rps25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,053,320 - 101,055,787 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365423,974,804 - 3,976,816 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365423,974,796 - 3,977,155 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,235,737 - 46,242,432 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,237,911 - 46,242,174 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,270,933 - 51,277,352 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,386,840 - 110,389,492 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604315,644,147 - 15,647,518 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478414,407,088 - 14,410,302 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rps25
52 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:71
Interacting mature miRNAs:76
Transcripts:ENSMUST00000080300
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93673624349420511Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93694340650111140Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94041959451808670Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
11532693Sluc39_msusceptibility to lung cancer 39 (mouse)94064537448351476Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
12738415Lfibq8_mliver fibrosis QTL 8 (mouse)94140216245343743Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
13432191Actrse4_mactivity response to saline/ethanol 4 (mouse)94370321448603195Mouse

Markers in Region
RH136090  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38944,406,937 - 44,407,289UniSTSGRCm38
MGSCv37944,215,020 - 44,215,372UniSTSGRCm37
Celera941,654,527 - 41,654,879UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map9A5.2UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000080300   ⟹   ENSMUSP00000079180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,318,436 - 44,321,724 (+)Ensembl
GRCm38.p6 Ensembl944,407,139 - 44,410,427 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,318,957 - 44,320,072 (+)Ensembl
GRCm38.p6 Ensembl944,407,660 - 44,408,775 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215610
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,319,010 - 44,321,491 (+)Ensembl
GRCm38.p6 Ensembl944,407,713 - 44,410,194 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216076   ⟹   ENSMUSP00000148977
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,318,992 - 44,321,489 (+)Ensembl
GRCm38.p6 Ensembl944,407,695 - 44,410,192 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216867   ⟹   ENSMUSP00000149401
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,318,994 - 44,321,486 (+)Ensembl
GRCm38.p6 Ensembl944,407,697 - 44,410,189 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217231
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,318,995 - 44,319,678 (+)Ensembl
GRCm38.p6 Ensembl944,407,698 - 44,408,381 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217620
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,319,308 - 44,320,652 (+)Ensembl
GRCm38.p6 Ensembl944,408,011 - 44,409,355 (+)Ensembl
RefSeq Acc Id: NM_024266   ⟹   NP_077228
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39944,319,011 - 44,321,703 (+)NCBI
GRCm38944,407,714 - 44,410,406 (+)ENTREZGENE
MGSCv37944,215,797 - 44,218,489 (+)RGD
Celera941,655,304 - 41,658,010 (+)RGD
cM Map9 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_077228   ⟸   NM_024266
- UniProtKB: P62852 (UniProtKB/Swiss-Prot),   Q58EA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000149401   ⟸   ENSMUST00000216867
RefSeq Acc Id: ENSMUSP00000079180   ⟸   ENSMUST00000080300
RefSeq Acc Id: ENSMUSP00000148977   ⟸   ENSMUST00000216076

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62852-F1-model_v2 AlphaFold P62852 1-125 view protein structure

Promoters
RGD ID:6845107
Promoter ID:MM_KWN:57118
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_021789,   NM_024266,   UC009PDL.1,   UC009PDM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36944,214,991 - 44,215,832 (+)MPROMDB
RGD ID:8669388
Promoter ID:EPDNEW_M12725
Type:initiation region
Name:Rps25_1
Description:Mus musculus ribosomal protein S25 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38944,407,705 - 44,407,765EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922867 AgrOrtholog
Ensembl Genes ENSMUSG00000009927 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000080300 ENTREZGENE
  ENSMUST00000080300.9 UniProtKB/Swiss-Prot
  ENSMUST00000216076.2 UniProtKB/TrEMBL
  ENSMUST00000216867.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ribosomal_S25 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:75617 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1922867 ENTREZGENE
NCBI Gene 75617 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S25 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12850 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S25 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps25 PhenoGen
UniProt A0A1L1SQA8_MOUSE UniProtKB/TrEMBL
  P62852 ENTREZGENE
  Q58EA6 ENTREZGENE, UniProtKB/TrEMBL
  RS25_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P25111 UniProtKB/Swiss-Prot