SLCO2B1 (solute carrier organic anion transporter family member 2B1) - Rat Genome Database

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Gene: SLCO2B1 (solute carrier organic anion transporter family member 2B1) Homo sapiens
Analyze
Symbol: SLCO2B1
Name: solute carrier organic anion transporter family member 2B1
RGD ID: 736486
HGNC Page HGNC:10962
Description: Enables prostaglandin transmembrane transporter activity and sodium-independent organic anion transmembrane transporter activity. Involved in organic anion transport and transmembrane transport. Located in apical plasma membrane and basal plasma membrane. Biomarker of liver cancer and pancreatic cancer.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DKFZp686E0517; KIAA0880; OATP-B; OATP-RP2; OATP2B1; OATPB; OATPRP2; organic anion transporter B; organic anion transporter polypeptide-related protein 2; organic anion transporting polypeptide 2B1; SLC21A9; solute carrier family 21 (organic anion transporter), member 9; solute carrier family 21 member 9; solute carrier organic anion transporter family, member 2B1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381175,151,107 - 75,206,549 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1175,100,563 - 75,206,549 (+)EnsemblGRCh38hg38GRCh38
GRCh371174,862,152 - 74,917,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361174,539,811 - 74,594,947 (+)NCBINCBI36Build 36hg18NCBI36
Build 341174,539,810 - 74,594,945NCBI
Celera1172,168,595 - 72,224,004 (+)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1171,159,611 - 71,215,067 (+)NCBIHuRef
CHM1_11174,745,634 - 74,801,048 (+)NCBICHM1_1
T2T-CHM13v2.01175,080,709 - 75,136,155 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Qualifier
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Reference
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Original Reference(s)
SLCO2B1Humanliver cancer disease_progressionIEP 152995425mRNA:decreased expression:liver (human)RGD 
SLCO2B1Humanpancreatic cancer  IEP 152995425mRNA:decreased expression:pancreas (human)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
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Original Reference(s)
SLCO2B1Human3-methylglutaconic aciduria type 7b  IAGPRGD:1564506128554872ClinVar Annotator: match by term: 3-methylglutaconic aciduria, type VIIBClinVarPMID:28492532
SLCO2B1Humanintellectual disability  IAGPRGD:427234668554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 

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Original Reference(s)
SLCO2B1Human(+)-schisandrin B multiple interactionsISORGD:6213916480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of SLCO2B1 mRNA]CTDPMID:31150632
SLCO2B1Human(1->4)-beta-D-glucan multiple interactionsISORGD:7364876480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of SLCO2B1 mRNACTDPMID:36331819
SLCO2B1Human1,2-dimethylhydrazine multiple interactionsISORGD:7364876480464[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SLCO2B1 mRNACTDPMID:22206623
SLCO2B1Human1,2-dimethylhydrazine multiple interactionsISORGD:6213916480464[APC protein affects the susceptibility to 1,2-Dimethylhydrazine] which results in decreased expression of SLCO2B1 mRNACTDPMID:27840820
SLCO2B1Human1,2-dimethylhydrazine decreases expressionISORGD:73648764804641,2-Dimethylhydrazine results in decreased expression of SLCO2B1 mRNACTDPMID:22206623
SLCO2B1Human17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of SLCO2B1 mRNACTDPMID:20106945
SLCO2B1Human17beta-estradiol decreases expressionISORGD:7364876480464Estradiol results in decreased expression of SLCO2B1 mRNACTDPMID:39298647
SLCO2B1Human2,2',4,4',5,6'-Hexabromodiphenyl ether increases importEXP 6480464SLCO2B1 results in increased import of 2,2',4,4',5,6'-hexabromodiphenyl etherCTDPMID:20176623
SLCO2B1Human2,2',4,4',5,6'-Hexabromodiphenyl ether multiple interactionsEXP 64804642,2',4,4',5,6'-hexabromodiphenyl ether inhibits the reaction [SLCO2B1 results in increased import of estrone sulfate]CTDPMID:20176623
SLCO2B1Human2,2',4,4'-Tetrabromodiphenyl ether multiple interactionsEXP 64804642,2',4,4'-tetrabromodiphenyl ether inhibits the reaction [SLCO2B1 results in increased import of estrone sulfate]CTDPMID:20176623
SLCO2B1Human2,2',4,4'-Tetrabromodiphenyl ether increases uptakeISORGD:7364876480464SLCO2B1 protein results in increased uptake of 2,2',4,4'-tetrabromodiphenyl etherCTDPMID:21884716
SLCO2B1Human2,2',4,4'-Tetrabromodiphenyl ether increases importEXP 6480464SLCO2B1 results in increased import of 2,2',4,4'-tetrabromodiphenyl etherCTDPMID:20176623
SLCO2B1Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:7364876480464Tetrachlorodibenzodioxin results in decreased expression of SLCO2B1 mRNACTDPMID:19770486|PMID:26290441
SLCO2B1Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:6213916480464Tetrachlorodibenzodioxin results in decreased expression of SLCO2B1 mRNACTDPMID:21215274
SLCO2B1Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:6213916480464Tetrachlorodibenzodioxin affects the expression of SLCO2B1 mRNACTDPMID:34747641
SLCO2B1Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:6213916480464Tetrachlorodibenzodioxin results in increased expression of SLCO2B1 mRNACTDPMID:32109520
SLCO2B1Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of SLCO2B1 mRNACTDPMID:16837569|PMID:20106945|PMID:25803276|PMID:26159488|PMID:27450509
SLCO2B1Human2,4-dibromophenyl 2,4,5-tribromophenyl ether increases uptakeISORGD:7364876480464SLCO2B1 protein results in increased uptake of 2,2',4,4',5-brominated diphenyl etherCTDPMID:21884716
SLCO2B1Human2,4-dinitrotoluene affects expressionISORGD:62139164804642,4-dinitrotoluene affects the expression of SLCO2B1 mRNACTDPMID:21346803
SLCO2B1Human2,6-dinitrotoluene affects expressionISORGD:62139164804642,6-dinitrotoluene affects the expression of SLCO2B1 mRNACTDPMID:21346803

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Biological Process
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Original Reference(s)
SLCO2B1Humanbile acid and bile salt transport  ISORGD:6213919068941 RGDPMID:15345472|REF_RGD_ID:2316987
SLCO2B1Humanbile acid and bile salt transport involved_inIBAPANTHER:PTN002604687|RGD:621391150520179 GO_CentralGO_REF:0000033
SLCO2B1Humancell population proliferation acts_upstream_of_or_withinISORGD:7364879068941 PMID:35714613MGIPMID:35714613
SLCO2B1Humancellular response to iron ion starvation acts_upstream_of_or_withinISORGD:7364879068941 PMID:35714613MGIPMID:35714613
SLCO2B1Humanheme catabolic process involved_inTAS 150520179 ReactomeReactome:R-HSA-189483
SLCO2B1Humanheme import into cell acts_upstream_of_or_withinISORGD:7364879068941 PMID:35714613MGIPMID:35714613
SLCO2B1Humanintercellular transport acts_upstream_of_or_withinISORGD:7364879068941 PMID:34205780MGIPMID:34205780
SLCO2B1Humanintracellular iron ion homeostasis acts_upstream_of_or_withinISORGD:7364879068941 PMID:35714613MGIPMID:35714613
SLCO2B1Humanliver development  ISORGD:6213919068941 RGDPMID:15345472|REF_RGD_ID:2316987
SLCO2B1Humanmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-0406150520179 UniProtGO_REF:0000043
SLCO2B1Humanorganic anion transport involved_inIDA 150520179 PMID:12724351, PMID:22021325ARUK-UCLPMID:12724351|PMID:22021325
SLCO2B1Humanprostaglandin transport involved_inIEAGO:0015132150520179 GOCGO_REF:0000108
SLCO2B1Humansodium-independent icosanoid transport  ISORGD:6213919068941 RGDPMID:15345472|REF_RGD_ID:2316987
SLCO2B1Humansodium-independent organic anion transport involved_inTAS 150520179 ReactomeReactome:R-HSA-879518
SLCO2B1Humansodium-independent organic anion transport involved_inIBAPANTHER:PTN002261135|RGD:621389150520179 GO_CentralGO_REF:0000033
SLCO2B1Humantransmembrane transport involved_inIDA 150520179 PMID:12724351, PMID:29871943ARUK-UCLPMID:12724351|PMID:29871943
SLCO2B1Humantransmembrane transport involved_inIMP 150520179 PMID:29752999ARUK-UCLPMID:29752999
SLCO2B1Humantransmembrane transport involved_inIEAInterPro:IPR004156150520179 InterProGO_REF:0000002
SLCO2B1Humantransport across blood-brain barrier involved_inNAS 150520179 PMID:26590417, PMID:30280653ARUK-UCLPMID:26590417|PMID:30280653
SLCO2B1Humanxenobiotic metabolic process involved_inTAS 150520179 ReactomeReactome:R-HSA-9749641|Reactome:R-HSA-9754706
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Cellular Component
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Original Reference(s)
SLCO2B1Humanapical plasma membrane  ISORGD:6213919068941 RGDPMID:18619525|REF_RGD_ID:2301072
SLCO2B1Humanapical plasma membrane is_active_inIBAPANTHER:PTN002604687|RGD:621391|UniProtKB:O94956150520179 GO_CentralGO_REF:0000033
SLCO2B1Humanapical plasma membrane located_inIEAUniProtKB-SubCell:SL-0015150520179 UniProtGO_REF:0000044
SLCO2B1Humanapical plasma membrane located_inISSUniProtKB:Q9JHI3150520179 PMID:18619525ARUK-UCLPMID:18619525
SLCO2B1Humanapical plasma membrane located_inIDA 150520179 PMID:12724351ARUK-UCLPMID:12724351
SLCO2B1Humanbasal plasma membrane located_inIEAUniProtKB-SubCell:SL-0024150520179 UniProtGO_REF:0000044
SLCO2B1Humanbasal plasma membrane located_inIDA 150520179 PMID:11159893, PMID:11932330, PMID:12409283, PMID:12724351, PMID:35307651UniProtPMID:11159893|PMID:11932330|PMID:12409283|PMID:12724351|PMID:35307651
SLCO2B1Humanbasolateral plasma membrane located_inIEAUniProtKB-SubCell:SL-0026150520179 UniProtGO_REF:0000044
SLCO2B1Humanbasolateral plasma membrane is_active_inIBAFB:FBgn0032123|FB:FBgn0034715|FB:FBgn0034716|MGI:1351891|MGI:1889679|PANTHER:PTN002261135|RGD:1303048|RGD:628660|RGD:69300|UniProtKB:Q9NYB5150520179 GO_CentralGO_REF:0000033
SLCO2B1Humanmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
SLCO2B1Humanmembrane located_inIEAInterPro:IPR004156150520179 InterProGO_REF:0000002
SLCO2B1Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
SLCO2B1Humanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
SLCO2B1Humanplasma membrane is_active_inISORGD:7364879068941 PMID:35714613MGIPMID:35714613
SLCO2B1Humanplasma membrane located_inIDA 150520179 PMID:21278488, PMID:29752999, PMID:29871943ARUK-UCLPMID:21278488|PMID:29752999|PMID:29871943
SLCO2B1Humanplasma membrane located_inTAS 150520179 ReactomeReactome:R-HSA-879562|Reactome:R-HSA-9661723|Reactome:R-HSA-9749607|Reactome:R-HSA-9757010
SLCO2B1Humanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
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Molecular Function
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Original Reference(s)
SLCO2B1Humanbile acid transmembrane transporter activity  ISORGD:6213919068941 RGDPMID:15345472|REF_RGD_ID:2316987
SLCO2B1Humanbile acid transmembrane transporter activity enablesIBAPANTHER:PTN002604687|RGD:621391150520179 GO_CentralGO_REF:0000033
SLCO2B1Humanorganic anion transmembrane transporter activity enablesIMP 150520179 PMID:29871943UniProtPMID:29871943
SLCO2B1Humanorganic anion transmembrane transporter activity enablesIDA 150520179 PMID:10873595, PMID:11159893, PMID:11932330, PMID:12409283, PMID:12724351, PMID:14610227, PMID:16908597, PMID:18501590, PMID:19129463, PMID:22021325, PMID:22201122, PMID:26383540, PMID:27576593, more ...UniProtPMID:10873595|PMID:11159893|PMID:11932330|PMID:12409283|PMID:12724351|PMID:14610227|PMID:16908597|PMID:18501590|PMID:19129463|PMID:22021325|PMID:22201122|PMID:26383540|PMID:27576593|PMID:34628357
SLCO2B1Humanprostaglandin transmembrane transporter activity enablesIDA 150520179 PMID:10873595UniProtPMID:10873595
SLCO2B1Humansodium-independent organic anion transmembrane transporter activity enablesTAS 150520179 ReactomeReactome:R-HSA-879562|Reactome:R-HSA-9661723|Reactome:R-HSA-9749607|Reactome:R-HSA-9757010
SLCO2B1Humansodium-independent organic anion transmembrane transporter activity enablesIBAPANTHER:PTN002261135|RGD:621391|UniProtKB:O94956150520179 GO_CentralGO_REF:0000033
SLCO2B1Humansodium-independent organic anion transmembrane transporter activity enablesIDA 150520179 PMID:18501590UniProtPMID:18501590
SLCO2B1Humansodium-independent organic anion transmembrane transporter activity  ISORGD:6213919068941 RGDPMID:15345472|REF_RGD_ID:2316987
SLCO2B1Humantransmembrane transporter activity enablesIDA 150520179 PMID:25132355UniProtPMID:25132355
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RGD Manual Annotations


  
Object Symbol
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Reference
Notes
Source
Original Reference(s)
SLCO2B1Humanstatin pharmacokinetics pathway   TAS 2316977 RGD 
Object Symbol
Species
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Evidence
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Reference
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Original Reference(s)
SLCO2B1HumanIntellectual disability  IAGPRGD:427234668554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Expression of OATP family members in hormone-related cancers: potential markers of progression. Pressler H, etal., PLoS One. 2011;6(5):e20372. doi: 10.1371/journal.pone.0020372. Epub 2011 May 19.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Pharmacogenetics and pharmacogenomics of cholesterol-lowering therapy. Schmitz G, etal., Curr Opin Lipidol. 2007 Apr;18(2):164-73.
PMID:8889548   PMID:10048485   PMID:10873595   PMID:11159893   PMID:11932330   PMID:12130747   PMID:12409283   PMID:12477932   PMID:12724351   PMID:14579113   PMID:14610227   PMID:14702039  
PMID:15226675   PMID:15489334   PMID:16754786   PMID:16908597   PMID:17906856   PMID:18501590   PMID:18619525   PMID:19129463   PMID:19237515   PMID:19343046   PMID:19383542   PMID:19620935  
PMID:19940267   PMID:20159975   PMID:20173083   PMID:20560925   PMID:20635135   PMID:20679960   PMID:20974993   PMID:21266523   PMID:21278488   PMID:21606417   PMID:21780830   PMID:21832049  
PMID:21849517   PMID:21873635   PMID:22021325   PMID:22201122   PMID:22822035   PMID:23132664   PMID:23151832   PMID:23190519   PMID:23531488   PMID:23896625   PMID:23970434   PMID:24762081  
PMID:24903351   PMID:25132355   PMID:25857231   PMID:26091578   PMID:26383540   PMID:26409184   PMID:26526067   PMID:26590417   PMID:26668348   PMID:26692285   PMID:27576593   PMID:28013215  
PMID:28318878   PMID:28493059   PMID:28532671   PMID:28627804   PMID:28815335   PMID:28975866   PMID:29248449   PMID:29422623   PMID:29735582   PMID:29752999   PMID:29871943   PMID:30280653  
PMID:30573512   PMID:30587554   PMID:30639242   PMID:31849283   PMID:32114507   PMID:32461666   PMID:32587096   PMID:32602343   PMID:32902299   PMID:33032910   PMID:33723795   PMID:34628357  
PMID:34762930   PMID:35307651   PMID:35575683   PMID:35714613   PMID:36253893   PMID:37856781   PMID:38334954   PMID:38423481   PMID:38432624  



SLCO2B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381175,151,107 - 75,206,549 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1175,100,563 - 75,206,549 (+)EnsemblGRCh38hg38GRCh38
GRCh371174,862,152 - 74,917,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361174,539,811 - 74,594,947 (+)NCBINCBI36Build 36hg18NCBI36
Build 341174,539,810 - 74,594,945NCBI
Celera1172,168,595 - 72,224,004 (+)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1171,159,611 - 71,215,067 (+)NCBIHuRef
CHM1_11174,745,634 - 74,801,048 (+)NCBICHM1_1
T2T-CHM13v2.01175,080,709 - 75,136,155 (+)NCBIT2T-CHM13v2.0
Slco2b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39799,307,011 - 99,360,547 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl799,307,011 - 99,360,547 (-)EnsemblGRCm39 Ensembl
GRCm38799,657,804 - 99,711,340 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl799,657,804 - 99,711,340 (-)EnsemblGRCm38mm10GRCm38
MGSCv377106,806,314 - 106,859,850 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36799,531,887 - 99,585,423 (-)NCBIMGSCv36mm8
Celera799,983,704 - 100,037,345 (-)NCBICelera
Cytogenetic Map7E1NCBI
cM Map754.11NCBI
Slco2b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81163,371,410 - 163,419,412 (-)NCBIGRCr8
mRatBN7.21153,959,288 - 154,007,294 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1153,959,293 - 154,007,353 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1161,954,894 - 161,991,348 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01169,135,025 - 169,171,477 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,008,573 - 162,045,023 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01164,623,313 - 164,671,612 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,623,599 - 164,671,577 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01170,827,265 - 170,875,262 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41156,992,492 - 157,028,887 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11157,070,898 - 157,107,293 (-)NCBI
Celera1152,044,550 - 152,080,928 (-)NCBICelera
Cytogenetic Map1q32NCBI
Slco2b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541416,614,155 - 16,664,485 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541416,615,012 - 16,664,784 (-)NCBIChiLan1.0ChiLan1.0
SLCO2B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2976,081,750 - 76,137,178 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11177,124,430 - 77,179,711 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01170,211,124 - 70,266,513 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11173,515,433 - 73,570,410 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1173,515,433 - 73,570,410 (+)Ensemblpanpan1.1panPan2
SLCO2B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12123,347,593 - 23,393,480 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2123,346,070 - 23,473,831 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2123,112,620 - 23,158,473 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02123,549,950 - 23,595,798 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2123,549,950 - 23,595,787 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12123,348,431 - 23,394,289 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02123,544,699 - 23,590,501 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02123,462,533 - 23,508,286 (-)NCBIUU_Cfam_GSD_1.0
Slco2b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494762,398,940 - 62,447,624 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364983,998,474 - 4,047,239 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364983,998,537 - 4,047,436 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLCO2B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl99,427,121 - 9,474,230 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.199,433,978 - 9,474,248 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2910,692,649 - 10,725,453 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLCO2B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,375,924 - 66,430,804 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,376,299 - 66,433,055 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604359,380,783 - 59,435,113 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slco2b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248171,881,327 - 1,931,186 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248171,879,710 - 1,943,430 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in SLCO2B1
63 total Variants

1 to 10 of 77 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 11q13.4-14.1(chr11:71923251-79662025)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052684]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052684]|See cases [RCV000052684] Chr11:71923251..79662025 [GRCh38]
Chr11:71634297..79373069 [GRCh37]
Chr11:71311945..79050717 [NCBI36]
Chr11:11q13.4-14.1
pathogenic
GRCh38/hg38 11q13.4-13.5(chr11:71928796-77064521)x1 copy number loss See cases [RCV000052708] Chr11:71928796..77064521 [GRCh38]
Chr11:71639842..76751808 [GRCh37]
Chr11:71317490..76453216 [NCBI36]
Chr11:11q13.4-13.5
pathogenic
GRCh38/hg38 11q13.4-14.1(chr11:71969881-78232895)x1 copy number loss See cases [RCV000052709] Chr11:71969881..78232895 [GRCh38]
Chr11:71680927..77943941 [GRCh37]
Chr11:71358575..77621589 [NCBI36]
Chr11:11q13.4-14.1
pathogenic
NM_007256.4(SLCO2B1):c.1780G>T (p.Asp594Tyr) single nucleotide variant Malignant melanoma [RCV000069690] Chr11:75202917 [GRCh38]
Chr11:74913962 [GRCh37]
Chr11:74591610 [NCBI36]
Chr11:11q13.4
not provided
NM_007256.4(SLCO2B1):c.1867G>A (p.Asp623Asn) single nucleotide variant Malignant melanoma [RCV000069691] Chr11:75203345 [GRCh38]
Chr11:74914390 [GRCh37]
Chr11:74592038 [NCBI36]
Chr11:11q13.4
not provided
NM_007256.5(SLCO2B1):c.428G>A (p.Arg143His) single nucleotide variant not specified [RCV004282503] Chr11:75165929 [GRCh38]
Chr11:74876974 [GRCh37]
Chr11:11q13.4
uncertain significance
GRCh37/hg19 11q13.4(chr11:74580424-75099464)x3 copy number gain See cases [RCV000448058] Chr11:74580424..75099464 [GRCh37]
Chr11:11q13.4
uncertain significance
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
NM_007256.5(SLCO2B1):c.224C>T (p.Thr75Ile) single nucleotide variant not specified [RCV004329739] Chr11:75164039 [GRCh38]
Chr11:74875084 [GRCh37]
Chr11:11q13.4
uncertain significance
1 to 10 of 77 rows

Predicted Target Of
Summary Value
Count of predictions:7197
Count of miRNA genes:1173
Interacting mature miRNAs:1496
Transcripts:ENST00000289575, ENST00000341411, ENST00000428359, ENST00000454962, ENST00000525650, ENST00000525845, ENST00000526660, ENST00000526839, ENST00000527180, ENST00000528108, ENST00000530012, ENST00000530015, ENST00000530556, ENST00000531457, ENST00000531713, ENST00000531756, ENST00000532236, ENST00000534004, ENST00000534186
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357380BW64_HBody weight QTL 64 (human)2.2Body weightpercent fat after exercise training116097893786978937Human

D11S3488  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371174,878,704 - 74,878,914UniSTSGRCh37
Build 361174,556,352 - 74,556,562RGDNCBI36
Celera1172,185,258 - 72,185,468RGD
Cytogenetic Map11q13UniSTS
HuRef1171,176,286 - 71,176,496UniSTS
SHGC-142426  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371174,861,156 - 74,861,440UniSTSGRCh37
Build 361174,538,804 - 74,539,088RGDNCBI36
Celera1172,167,711 - 72,167,995RGD
Cytogenetic Map11q13UniSTS
HuRef1171,158,735 - 71,159,019UniSTS
TNG Radiation Hybrid Map1133613.0UniSTS
SLC21A9_406.2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371174,916,445 - 74,917,344UniSTSGRCh37
Build 361174,594,093 - 74,594,992RGDNCBI36
Celera1172,223,004 - 72,223,903RGD
HuRef1171,214,067 - 71,214,966UniSTS
STS-T26641  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371174,916,926 - 74,917,163UniSTSGRCh37
GRCh371174,916,796 - 74,916,925UniSTSGRCh37
Build 361174,594,444 - 74,594,573RGDNCBI36
Celera1172,223,485 - 72,223,722UniSTS
Celera1172,223,355 - 72,223,484RGD
Cytogenetic Map11q13UniSTS
HuRef1171,214,548 - 71,214,785UniSTS
HuRef1171,214,418 - 71,214,547UniSTS
GeneMap99-GB4 RH Map11272.56UniSTS
NCBI RH Map11630.2UniSTS
D11S1073  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371174,915,577 - 74,915,734UniSTSGRCh37
Build 361174,593,225 - 74,593,382RGDNCBI36
Celera1172,222,136 - 72,222,293RGD
Cytogenetic Map11q13UniSTS
HuRef1171,213,199 - 71,213,356UniSTS
RH45548  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371174,895,783 - 74,895,994UniSTSGRCh37
Build 361174,573,431 - 74,573,642RGDNCBI36
Celera1172,202,340 - 72,202,551RGD
Cytogenetic Map11q13UniSTS
HuRef1171,193,368 - 71,193,579UniSTS
GeneMap99-GB4 RH Map11274.08UniSTS
NCBI RH Map11631.8UniSTS
D8S2278  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map12q21.33UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map3p25.3-p24.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map2q11.2-q12.1UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map10q11UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map12q21.31UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map7q34-q35UniSTS
Cytogenetic MapXp22.1UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map4q34.1UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map6q25UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map6p22UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map2p23.1UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map12p12.3UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map15q22.1UniSTS
Cytogenetic Map1p34-p33UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map14q22UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map13q11UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map14q12-q13UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map4q31UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map15q15-q21.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map4q22.1-q23UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map18q22.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic MapXq26.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map13q33.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map3p12.1UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map12q14.3-q15UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map3q28UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map3p21.32UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map3p26.1UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.13UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map9q33.1UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map21q21.1UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map2q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map17q24UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1p13-p12UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map10q21.1UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map14q31UniSTS
D1S3693  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map3p22UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map10p15.3-p15.2UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map1q32.3-q41UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map17q12UniSTS
D1S1425  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map2p23-p22UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic Map2p11.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map2p12-p11.2UniSTS
Cytogenetic Map3q11.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map1q32.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map18p11.3-p11.2UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map2p24UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map12q24.32UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map15q11-q12UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map4q31.21UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map10p15-p14UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map15q24-q25UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11q23.1-q23.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map16q24.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic MapXq21.1UniSTS
STS-T26641  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11q13UniSTS
GeneMap99-GB4 RH Map11274.08UniSTS
NCBI RH Map11631.8UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2408 2788 2231 4818 1713 2233 5 619 1766 462 2169 7087 6280 19 3675 833 1685 1501 166


1 to 30 of 41 rows
RefSeq Transcripts NG_027921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001145211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001145212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017017157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054367581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054367582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054367583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB020687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB026256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF205073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK127289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK127363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL117465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK299190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ969225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 41 rows

Ensembl Acc Id: ENST00000289575   ⟹   ENSP00000289575
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,151,107 - 75,206,549 (+)Ensembl
Ensembl Acc Id: ENST00000341411
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,203,381 - 75,206,254 (+)Ensembl
Ensembl Acc Id: ENST00000428359   ⟹   ENSP00000388912
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,159,788 - 75,204,717 (+)Ensembl
Ensembl Acc Id: ENST00000454962   ⟹   ENSP00000389653
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,151,213 - 75,206,102 (+)Ensembl
Ensembl Acc Id: ENST00000525650   ⟹   ENSP00000436324
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,151,115 - 75,204,736 (+)Ensembl
Ensembl Acc Id: ENST00000525845   ⟹   ENSP00000431324
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,159,780 - 75,164,012 (+)Ensembl
Ensembl Acc Id: ENST00000526660
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,100,563 - 75,188,233 (+)Ensembl
Ensembl Acc Id: ENST00000526839   ⟹   ENSP00000434742
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,165,874 - 75,170,004 (+)Ensembl
Ensembl Acc Id: ENST00000527180   ⟹   ENSP00000436513
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,157,071 - 75,169,241 (+)Ensembl
Ensembl Acc Id: ENST00000528108
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,196,275 - 75,200,400 (+)Ensembl
Ensembl Acc Id: ENST00000530012
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,196,254 - 75,203,408 (+)Ensembl
Ensembl Acc Id: ENST00000530015
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,199,554 - 75,206,400 (+)Ensembl
Ensembl Acc Id: ENST00000530556   ⟹   ENSP00000435384
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,151,788 - 75,164,012 (+)Ensembl
Ensembl Acc Id: ENST00000531457
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,151,079 - 75,162,923 (+)Ensembl
Ensembl Acc Id: ENST00000531713   ⟹   ENSP00000432889
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,100,591 - 75,165,830 (+)Ensembl
Ensembl Acc Id: ENST00000531756
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,151,070 - 75,203,310 (+)Ensembl
Ensembl Acc Id: ENST00000532236   ⟹   ENSP00000434112
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,151,061 - 75,204,991 (+)Ensembl
Ensembl Acc Id: ENST00000534004   ⟹   ENSP00000431192
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,152,325 - 75,164,012 (+)Ensembl
Ensembl Acc Id: ENST00000534186   ⟹   ENSP00000433872
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1175,159,784 - 75,165,948 (+)Ensembl
RefSeq Acc Id: NM_001145211   ⟹   NP_001138683
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381175,159,832 - 75,206,549 (+)NCBI
GRCh371174,862,032 - 74,917,445 (+)ENTREZGENE
HuRef1171,159,611 - 71,215,067 (+)ENTREZGENE
CHM1_11174,754,446 - 74,801,048 (+)NCBI
T2T-CHM13v2.01175,089,434 - 75,136,155 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001145212   ⟹   NP_001138684
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381175,151,107 - 75,206,549 (+)NCBI
GRCh371174,862,032 - 74,917,445 (+)ENTREZGENE
HuRef1171,159,611 - 71,215,067 (+)ENTREZGENE
CHM1_11174,745,634 - 74,801,048 (+)NCBI
T2T-CHM13v2.01175,080,709 - 75,136,155 (+)NCBI
Sequence:
RefSeq Acc Id: NM_007256   ⟹   NP_009187
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381175,151,107 - 75,206,549 (+)NCBI
GRCh371174,862,032 - 74,917,445 (+)ENTREZGENE
Build 361174,539,811 - 74,594,947 (+)NCBI Archive
HuRef1171,159,611 - 71,215,067 (+)ENTREZGENE
CHM1_11174,745,634 - 74,801,048 (+)NCBI
T2T-CHM13v2.01175,080,709 - 75,136,155 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017017157   ⟹   XP_016872646
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381175,156,045 - 75,206,549 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047426333   ⟹   XP_047282289
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381175,159,832 - 75,206,549 (+)NCBI
RefSeq Acc Id: XM_047426334   ⟹   XP_047282290
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381175,159,832 - 75,206,549 (+)NCBI
RefSeq Acc Id: XM_054367581   ⟹   XP_054223556
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01175,089,439 - 75,136,155 (+)NCBI
RefSeq Acc Id: XM_054367582   ⟹   XP_054223557
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01175,089,374 - 75,136,155 (+)NCBI
RefSeq Acc Id: XM_054367583   ⟹   XP_054223558
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01175,082,095 - 75,136,155 (+)NCBI
1 to 30 of 40 rows
Protein RefSeqs NP_001138683 (Get FASTA)   NCBI Sequence Viewer  
  NP_001138684 (Get FASTA)   NCBI Sequence Viewer  
  NP_009187 (Get FASTA)   NCBI Sequence Viewer  
  XP_016872646 (Get FASTA)   NCBI Sequence Viewer  
  XP_047282289 (Get FASTA)   NCBI Sequence Viewer  
  XP_047282290 (Get FASTA)   NCBI Sequence Viewer  
  XP_054223556 (Get FASTA)   NCBI Sequence Viewer  
  XP_054223557 (Get FASTA)   NCBI Sequence Viewer  
  XP_054223558 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG42205 (Get FASTA)   NCBI Sequence Viewer  
  AAH41095 (Get FASTA)   NCBI Sequence Viewer  
  BAA74903 (Get FASTA)   NCBI Sequence Viewer  
  BAA78638 (Get FASTA)   NCBI Sequence Viewer  
  BAF82923 (Get FASTA)   NCBI Sequence Viewer  
  BAG57720 (Get FASTA)   NCBI Sequence Viewer  
  BAG58835 (Get FASTA)   NCBI Sequence Viewer  
  BAG61922 (Get FASTA)   NCBI Sequence Viewer  
  BAG63777 (Get FASTA)   NCBI Sequence Viewer  
  BAG65535 (Get FASTA)   NCBI Sequence Viewer  
  CAB55940 (Get FASTA)   NCBI Sequence Viewer  
  CAH56206 (Get FASTA)   NCBI Sequence Viewer  
  CAI38409 (Get FASTA)   NCBI Sequence Viewer  
  CAR64268 (Get FASTA)   NCBI Sequence Viewer  
  CAR64269 (Get FASTA)   NCBI Sequence Viewer  
  CAR64270 (Get FASTA)   NCBI Sequence Viewer  
  CAR64271 (Get FASTA)   NCBI Sequence Viewer  
  CAR64272 (Get FASTA)   NCBI Sequence Viewer  
  CAR64273 (Get FASTA)   NCBI Sequence Viewer  
  CAX52184 (Get FASTA)   NCBI Sequence Viewer  
  EAW74956 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 40 rows
1 to 5 of 21 rows
1 to 5 of 21 rows
RefSeq Acc Id: NP_009187   ⟸   NM_007256
- Peptide Label: isoform 1
- UniProtKB: Q9UFU1 (UniProtKB/Swiss-Prot),   Q9H2Z0 (UniProtKB/Swiss-Prot),   E9PPU8 (UniProtKB/Swiss-Prot),   E7ERN5 (UniProtKB/Swiss-Prot),   B4DTB0 (UniProtKB/Swiss-Prot),   B4DGA9 (UniProtKB/Swiss-Prot),   A8K2G9 (UniProtKB/Swiss-Prot),   O94956 (UniProtKB/Swiss-Prot),   A0A024R5I4 (UniProtKB/TrEMBL),   E9PRW4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001138684   ⟸   NM_001145212
- Peptide Label: isoform 3
- UniProtKB: A0A0A0MTF1 (UniProtKB/TrEMBL),   E9PRW4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001138683   ⟸   NM_001145211
- Peptide Label: isoform 2
- UniProtKB: E9PRW4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016872646   ⟸   XM_017017157
- Peptide Label: isoform X1
- UniProtKB: E9PRW4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000435384   ⟸   ENST00000530556
Kazal-like

Name Modeler Protein Id AA Range Protein Structure
AF-O94956-F1-model_v2 AlphaFold O94956 1-709 view protein structure

RGD ID:7221559
Promoter ID:EPDNEW_H16525
Type:initiation region
Name:SLCO2B1_1
Description:solute carrier organic anion transporter family member 2B1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H16524  EPDNEW_H16526  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381175,151,107 - 75,151,167EPDNEW
RGD ID:7221561
Promoter ID:EPDNEW_H16526
Type:initiation region
Name:SLCO2B1_3
Description:solute carrier organic anion transporter family member 2B1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H16524  EPDNEW_H16525  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381175,159,832 - 75,159,892EPDNEW


1 to 40 of 52 rows
Database
Acc Id
Source(s)
COSMIC SLCO2B1 COSMIC
Ensembl Genes ENSG00000137491 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000289575 ENTREZGENE
  ENST00000289575.10 UniProtKB/Swiss-Prot
  ENST00000428359 ENTREZGENE
  ENST00000428359.6 UniProtKB/Swiss-Prot
  ENST00000454962.6 UniProtKB/Swiss-Prot
  ENST00000525650 ENTREZGENE
  ENST00000525650.5 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot
GTEx ENSG00000137491 GTEx
HGNC ID HGNC:10962 ENTREZGENE
Human Proteome Map SLCO2B1 Human Proteome Map
InterPro Kazal_dom UniProtKB/Swiss-Prot
  MFS_trans_sf UniProtKB/Swiss-Prot
  OATP UniProtKB/Swiss-Prot
KEGG Report hsa:11309 UniProtKB/Swiss-Prot
NCBI Gene 11309 ENTREZGENE
OMIM 604988 OMIM
PANTHER PTHR11388 UniProtKB/Swiss-Prot
  SOLUTE CARRIER ORGANIC ANION TRANSPORTER FAMILY MEMBER 2B1 UniProtKB/Swiss-Prot
Pfam OATP UniProtKB/Swiss-Prot
PharmGKB PA35845 PharmGKB, RGD
PROSITE KAZAL_2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot
UniProt A0A024R5I4 ENTREZGENE
  A0A0A0MTF1 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GX35_HUMAN UniProtKB/TrEMBL
  A8K2G9 ENTREZGENE
  B4DGA9 ENTREZGENE
  B4DTB0 ENTREZGENE
  C7BWB6_HUMAN UniProtKB/TrEMBL
  C7BWB7_HUMAN UniProtKB/TrEMBL
  E7ERN5 ENTREZGENE
  E9PI53_HUMAN UniProtKB/TrEMBL
  E9PIU9_HUMAN UniProtKB/TrEMBL
  E9PN87_HUMAN UniProtKB/TrEMBL
  E9PPU8 ENTREZGENE
  E9PRW4 ENTREZGENE, UniProtKB/TrEMBL
  H0YE11_HUMAN UniProtKB/TrEMBL
1 to 40 of 52 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 SLCO2B1  solute carrier organic anion transporter family member 2B1    solute carrier organic anion transporter family, member 2B1  Symbol and/or name change 5135510 APPROVED