TRIM50 (tripartite motif containing 50) - Rat Genome Database

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Gene: TRIM50 (tripartite motif containing 50) Homo sapiens
Analyze
Symbol: TRIM50
Name: tripartite motif containing 50
RGD ID: 735660
HGNC Page HGNC:19017
Description: Enables identical protein binding activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within regulation of establishment of protein localization. Located in cytosol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin ligase; E3 ubiquitin-protein ligase TRIM50; FLJ32804; MGC138357; MGC138359; RING-type E3 ubiquitin transferase TRIM50; TRIM50A; tripartite motif protein 50; tripartite motif-containing 50; tripartite motif-containing 50A; tripartite motif-containing protein 50
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38773,312,536 - 73,328,082 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl773,312,536 - 73,328,082 (-)EnsemblGRCh38hg38GRCh38
GRCh37772,726,532 - 72,742,085 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36772,364,471 - 72,380,021 (-)NCBINCBI36Build 36hg18NCBI36
Build 34772,171,185 - 72,186,736NCBI
Celera768,204,827 - 68,220,367 (-)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef768,608,274 - 68,623,822 (-)NCBIHuRef
CHM1_1772,872,558 - 72,888,104 (-)NCBICHM1_1
T2T-CHM13v2.0774,512,695 - 74,528,253 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2772,059,604 - 72,075,157 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
aggresome  (ISO)
cytoplasm  (IBA,IEA)
cytosol  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12853948   PMID:14702039   PMID:16344560   PMID:18029348   PMID:18398435   PMID:21143188   PMID:21873635   PMID:22610502   PMID:22792322   PMID:22829933   PMID:24308962  
PMID:26196062   PMID:29604308   PMID:29789583   PMID:31176697   PMID:32296183   PMID:33187986   PMID:34568024   PMID:36178239   PMID:36217029   PMID:36543142   PMID:37409971  


Genomics

Comparative Map Data
TRIM50
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38773,312,536 - 73,328,082 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl773,312,536 - 73,328,082 (-)EnsemblGRCh38hg38GRCh38
GRCh37772,726,532 - 72,742,085 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36772,364,471 - 72,380,021 (-)NCBINCBI36Build 36hg18NCBI36
Build 34772,171,185 - 72,186,736NCBI
Celera768,204,827 - 68,220,367 (-)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef768,608,274 - 68,623,822 (-)NCBIHuRef
CHM1_1772,872,558 - 72,888,104 (-)NCBICHM1_1
T2T-CHM13v2.0774,512,695 - 74,528,253 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2772,059,604 - 72,075,157 (-)NCBI
Trim50
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,380,738 - 135,396,744 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5135,382,149 - 135,396,859 (+)EnsemblGRCm39 Ensembl
GRCm385135,351,884 - 135,367,890 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,353,295 - 135,368,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv375135,829,166 - 135,843,524 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365135,637,923 - 135,652,281 (+)NCBIMGSCv36mm8
Celera5132,364,998 - 132,379,356 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.15NCBI
Trim50
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81226,937,349 - 26,954,286 (-)NCBIGRCr8
mRatBN7.21221,300,784 - 21,317,668 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,300,785 - 21,317,668 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1222,442,919 - 22,457,930 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01223,055,251 - 23,070,262 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01222,121,731 - 22,136,734 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,348,426 - 24,365,467 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,348,321 - 24,365,324 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,345,729 - 26,362,703 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,455,550 - 22,470,523 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11222,446,133 - 22,461,108 (-)NCBI
Celera1223,063,653 - 23,078,622 (-)NCBICelera
Cytogenetic Map12q12NCBI
TRIM50
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2691,573,297 - 91,592,291 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17139,837,930 - 139,856,829 (+)NCBINHGRI_mPanPan1
PanPan1.1780,465,084 - 80,478,744 (-)NCBIpanpan1.1PanPan1.1panPan2
TRIM50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.166,868,484 - 6,882,964 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl66,868,117 - 6,882,576 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha68,565,796 - 8,580,130 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.066,689,017 - 6,703,372 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl66,694,541 - 6,703,375 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.166,659,192 - 6,673,528 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.066,621,890 - 6,636,263 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.066,785,231 - 6,799,578 (+)NCBIUU_Cfam_GSD_1.0
Trim50
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,403,362 - 131,412,113 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365432,624,450 - 2,638,190 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365432,624,441 - 2,638,190 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM50
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,647,690 - 10,656,417 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1310,647,690 - 10,655,345 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2310,351,592 - 10,359,671 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM50
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,718,668 - 9,734,045 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl289,718,669 - 9,733,672 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660706,728,682 - 6,744,650 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim50
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474014,399,068 - 14,409,933 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474014,399,773 - 14,410,477 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRIM50
58 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7q11.22-21.11(chr7:71225344-81735657)x1 copy number loss See cases [RCV000050709] Chr7:71225344..81735657 [GRCh38]
Chr7:70690330..81364973 [GRCh37]
Chr7:70328266..81202909 [NCBI36]
Chr7:7q11.22-21.11
pathogenic
GRCh38/hg38 7q11.23(chr7:72930548-74869255)x1 copy number loss See cases [RCV000050996] Chr7:72930548..74869255 [GRCh38]
Chr7:72401086..74285345 [GRCh37]
Chr7:72039022..73923281 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.21-21.11(chr7:64560824-79186156)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052318]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052318]|See cases [RCV000052318] Chr7:64560824..79186156 [GRCh38]
Chr7:64021202..78815472 [GRCh37]
Chr7:63658637..78653408 [NCBI36]
Chr7:7q11.21-21.11
pathogenic
GRCh38/hg38 7q11.22-11.23(chr7:68668307-73710276)x1 copy number loss See cases [RCV000052321] Chr7:68668307..73710276 [GRCh38]
Chr7:68133294..72806397 [GRCh37]
Chr7:67771230..72762542 [NCBI36]
Chr7:7q11.22-11.23
pathogenic
GRCh38/hg38 7q11.22-11.23(chr7:72649515-75361855)x3 copy number gain See cases [RCV000051965] Chr7:72649515..75361855 [GRCh38]
Chr7:72196405..74991125 [GRCh37]
Chr7:71752436..74829061 [NCBI36]
Chr7:7q11.22-11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:72768821-74869255)x3 copy number gain See cases [RCV000051966] Chr7:72768821..74869255 [GRCh38]
Chr7:72233835..74285345 [GRCh37]
Chr7:71871771..73923281 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73280574-74725240)x3 copy number gain See cases [RCV000051967] Chr7:73280574..74725240 [GRCh38]
Chr7:72665462..74139573 [GRCh37]
Chr7:72303398..73777509 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73280574-74725240)x3 copy number gain See cases [RCV000051986] Chr7:73280574..74725240 [GRCh38]
Chr7:72679397..74139573 [GRCh37]
Chr7:72317333..73777509 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73280574-74839100)x3 copy number gain See cases [RCV000051989] Chr7:73280574..74839100 [GRCh38]
Chr7:72683244..74267189 [GRCh37]
Chr7:72321180..73905125 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73312575-74723034)x3 copy number gain See cases [RCV000051990] Chr7:73312575..74723034 [GRCh38]
Chr7:72726571..74137354 [GRCh37]
Chr7:72364507..73775290 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3
pathogenic
GRCh38/hg38 7q11.23(chr7:73096542-74727989)x1 copy number loss See cases [RCV000053133] Chr7:73096542..74727989 [GRCh38]
Chr7:72507129..74142327 [GRCh37]
Chr7:72145065..73780263 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73280574-74723034)x1 copy number loss See cases [RCV000053143] Chr7:73280574..74723034 [GRCh38]
Chr7:72681397..74137354 [GRCh37]
Chr7:72319333..73775290 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73286412-74723034)x1 copy number loss See cases [RCV000053144] Chr7:73286412..74723034 [GRCh38]
Chr7:72700414..74137354 [GRCh37]
Chr7:72338350..73775290 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73286412-74725240)x3 copy number gain See cases [RCV000053146] Chr7:73286412..74725240 [GRCh38]
Chr7:72700414..74139573 [GRCh37]
Chr7:72338350..73777509 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73286412-74725240)x1 copy number loss See cases [RCV000053147] Chr7:73286412..74725240 [GRCh38]
Chr7:72700414..74139573 [GRCh37]
Chr7:72338350..73777509 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73286412-74707848)x1 copy number loss See cases [RCV000053150] Chr7:73286412..74707848 [GRCh38]
Chr7:72700414..74122179 [GRCh37]
Chr7:72338350..73760115 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.22-11.23(chr7:69382353-77823832)x1 copy number loss See cases [RCV000054111] Chr7:69382353..77823832 [GRCh38]
Chr7:68847339..77453149 [GRCh37]
Chr7:68485275..77291085 [NCBI36]
Chr7:7q11.22-11.23
pathogenic
NM_178125.3(TRIM50):c.688G>A (p.Glu230Lys) single nucleotide variant Malignant melanoma [RCV000067932] Chr7:73318860 [GRCh38]
Chr7:72732859 [GRCh37]
Chr7:72370795 [NCBI36]
Chr7:7q11.23
not provided
NM_178125.3(TRIM50):c.858C>T (p.Phe286=) single nucleotide variant Malignant melanoma [RCV000061673] Chr7:73316581 [GRCh38]
Chr7:72730580 [GRCh37]
Chr7:72368516 [NCBI36]
Chr7:7q11.23
not provided
GRCh38/hg38 7q11.23(chr7:73304255-74718954)x1 copy number loss See cases [RCV000134329] Chr7:73304255..74718954 [GRCh38]
Chr7:72718252..74133273 [GRCh37]
Chr7:72356188..73771209 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73324677-73352304)x3 copy number gain See cases [RCV000134603] Chr7:73324677..73352304 [GRCh38]
Chr7:72738675..72766313 [GRCh37]
Chr7:72376611..72404249 [NCBI36]
Chr7:7q11.23
benign
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3
pathogenic
GRCh38/hg38 7q11.22-11.23(chr7:71461127-73614730)x1 copy number loss See cases [RCV000135816] Chr7:71461127..73614730 [GRCh38]
Chr7:70926112..72806397 [GRCh37]
Chr7:70564048..72666996 [NCBI36]
Chr7:7q11.22-11.23
pathogenic|likely pathogenic
GRCh38/hg38 7q11.23(chr7:73040501-75255046)x3 copy number gain See cases [RCV000135712] Chr7:73040501..75255046 [GRCh38]
Chr7:74285295..76351578 [GRCh37]
Chr7:73923231..76189514 [NCBI36]
Chr7:7q11.23
uncertain significance
GRCh38/hg38 7q11.23(chr7:72938064-74779028)x3 copy number gain See cases [RCV000136287] Chr7:72938064..74779028 [GRCh38]
Chr7:72408602..74193374 [GRCh37]
Chr7:72046538..73831310 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73280574-74924007)x1 copy number loss See cases [RCV000136391] Chr7:73280574..74924007 [GRCh38]
Chr7:72636006..74339014 [GRCh37]
Chr7:72273942..73976950 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73312582-74725057)x1 copy number loss See cases [RCV000136793] Chr7:73312582..74725057 [GRCh38]
Chr7:72726578..74139390 [GRCh37]
Chr7:72364514..73777326 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73192369-74779057)x3 copy number gain See cases [RCV000138102] Chr7:73192369..74779057 [GRCh38]
Chr7:72606409..74193403 [GRCh37]
Chr7:72244345..73831339 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73192369-74779057)x1 copy number loss See cases [RCV000138103] Chr7:73192369..74779057 [GRCh38]
Chr7:72606409..74193403 [GRCh37]
Chr7:72244345..73831339 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73286412-73556222)x1 copy number loss See cases [RCV000137730] Chr7:73286412..73556222 [GRCh38]
Chr7:72338350..72608488 [NCBI36]
Chr7:7q11.23
uncertain significance
GRCh38/hg38 7q11.23(chr7:73040501-75255046)x3 copy number gain See cases [RCV000137731] Chr7:73040501..75255046 [GRCh38]
Chr7:72635638..74904285 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73286412-74727989)x1 copy number loss See cases [RCV000138355] Chr7:73286412..74727989 [GRCh38]
Chr7:72700414..74142327 [GRCh37]
Chr7:72338350..73780263 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73280574-74727989)x3 copy number gain See cases [RCV000138356] Chr7:73280574..74727989 [GRCh38]
Chr7:72685734..74142327 [GRCh37]
Chr7:72323670..73780263 [NCBI36]
Chr7:7q11.23
pathogenic|conflicting data from submitters
GRCh38/hg38 7q11.23(chr7:73271690-74727989)x1 copy number loss See cases [RCV000138357] Chr7:73271690..74727989 [GRCh38]
Chr7:72685734..74142327 [GRCh37]
Chr7:72323670..73780263 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73192369-74869255)x1 copy number loss See cases [RCV000139190] Chr7:73192369..74869255 [GRCh38]
Chr7:72606409..74285345 [GRCh37]
Chr7:72244345..73923281 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73280574-74779057)x3 copy number gain See cases [RCV000139121] Chr7:73280574..74779057 [GRCh38]
Chr7:72663962..74193403 [GRCh37]
Chr7:72301898..73831339 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73286412-74869255)x1 copy number loss See cases [RCV000139797] Chr7:73286412..74869255 [GRCh38]
Chr7:72700414..74285345 [GRCh37]
Chr7:72338350..73923281 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73286412-74779057)x1 copy number loss See cases [RCV000140662] Chr7:73286412..74779057 [GRCh38]
Chr7:72700414..74193403 [GRCh37]
Chr7:72338350..73831339 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73192369-74883978)x3 copy number gain See cases [RCV000140718] Chr7:73192369..74883978 [GRCh38]
Chr7:72606409..74300084 [GRCh37]
Chr7:72244345..73938020 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73175475-74740268)x3 copy number gain See cases [RCV000141703] Chr7:73175475..74740268 [GRCh38]
Chr7:72589515..74154603 [GRCh37]
Chr7:72227451..73792539 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73286125-74732517)x3 copy number gain See cases [RCV000142341] Chr7:73286125..74732517 [GRCh38]
Chr7:72700127..74146858 [GRCh37]
Chr7:72338063..73784794 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73280574-74789341)x1 copy number loss See cases [RCV000142414] Chr7:73280574..74789341 [GRCh38]
Chr7:72637824..74203685 [GRCh37]
Chr7:72275760..73841621 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.21-11.23(chr7:62977085-75415352)x3 copy number gain See cases [RCV000142242] Chr7:62977085..75415352 [GRCh38]
Chr7:62437463..75044630 [GRCh37]
Chr7:62074898..74882566 [NCBI36]
Chr7:7q11.21-11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73286508-74727852)x1 copy number loss See cases [RCV000142230] Chr7:73286508..74727852 [GRCh38]
Chr7:72700510..74142190 [GRCh37]
Chr7:72338446..73780126 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73280574-74727918)x1 copy number loss See cases [RCV000142156] Chr7:73280574..74727918 [GRCh38]
Chr7:72650120..74142256 [GRCh37]
Chr7:72288056..73780192 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73286522-74727156)x1 copy number loss See cases [RCV000142159] Chr7:73286522..74727156 [GRCh38]
Chr7:72700524..74141494 [GRCh37]
Chr7:72338460..73779430 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73286412-74758583)x1 copy number loss See cases [RCV000142891] Chr7:73286412..74758583 [GRCh38]
Chr7:72700414..74172913 [GRCh37]
Chr7:72338350..73810849 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.21-11.23(chr7:62736364-75432710)x1 copy number loss See cases [RCV000142528] Chr7:62736364..75432710 [GRCh38]
Chr7:62196742..75061986 [GRCh37]
Chr7:61834177..74899922 [NCBI36]
Chr7:7q11.21-11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73280574-74728722)x3 copy number gain See cases [RCV000143390] Chr7:73280574..74728722 [GRCh38]
Chr7:72677301..74143060 [GRCh37]
Chr7:72315237..73780996 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.22-11.23(chr7:71478043-73444574)x1 copy number loss See cases [RCV000143344] Chr7:71478043..73444574 [GRCh38]
Chr7:70943028..72806397 [GRCh37]
Chr7:70580964..72496840 [NCBI36]
Chr7:7q11.22-11.23
uncertain significance
GRCh38/hg38 7q11.23(chr7:73304280-74727852)x1 copy number loss See cases [RCV000143632] Chr7:73304280..74727852 [GRCh38]
Chr7:72718277..74142190 [GRCh37]
Chr7:72356213..73780126 [NCBI36]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.22-21.11(chr7:72179092-79164071) copy number gain See cases [RCV000143454] Chr7:72179092..79164071 [GRCh38]
Chr7:71644077..78793387 [GRCh37]
Chr7:71282013..78631323 [NCBI36]
Chr7:7q11.22-21.11
likely pathogenic
GRCh37/hg19 7q11.23(chr7:72718252-74133332)x1 copy number loss See cases [RCV000239835] Chr7:72718252..74133332 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72708237-74339044)x1 copy number loss See cases [RCV000239823] Chr7:72708237..74339044 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72722981-74217390)x1 copy number loss See cases [RCV000258813] Chr7:72722981..74217390 [GRCh37]
Chr7:7q11.23
pathogenic|likely pathogenic
GRCh37/hg19 7q11.23(chr7:72722981-74141840)x1 copy number loss See cases [RCV000207450] Chr7:72722981..74141840 [GRCh37]
Chr7:7q11.23
pathogenic
Single allele duplication Autism spectrum disorder [RCV000225382] Chr7:72718278..74140708 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.22-11.23(chr7:71968212-74133332)x3 copy number gain See cases [RCV000240527] Chr7:71968212..74133332 [GRCh37]
Chr7:7q11.22-11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72721449-73959106) copy number loss Williams syndrome [RCV000767559] Chr7:72721449..73959106 [GRCh37]
Chr7:7q11.23
pathogenic
TMEM106B-BRAF fusion deletion Pleomorphic xanthoastrocytoma [RCV000454357] Chr7:12258147..140494267 [GRCh37]
Chr7:7p21.3-q34
pathogenic
GRCh37/hg19 7q11.23(chr7:72713253-74142256)x1 copy number loss See cases [RCV000449356] Chr7:72713253..74142256 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718277-74141673)x1 copy number loss See cases [RCV000449372] Chr7:72718277..74141673 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72700127-74143240)x3 copy number gain See cases [RCV000446793] Chr7:72700127..74143240 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72713253-74143030)x1 copy number loss See cases [RCV000447530] Chr7:72713253..74143030 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718277-74142190)x1 copy number loss See cases [RCV000447273] Chr7:72718277..74142190 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72708237-74133273)x1 copy number loss See cases [RCV000446832] Chr7:72708237..74133273 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72686958-74142190)x3 copy number gain See cases [RCV000446236] Chr7:72686958..74142190 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1 copy number loss See cases [RCV000446044] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7q11.23(chr7:72718252-72730551)x3 copy number gain See cases [RCV000446731] Chr7:72718252..72730551 [GRCh37]
Chr7:7q11.23
benign
GRCh37/hg19 7q11.23(chr7:72718277-74141603)x1 copy number loss See cases [RCV000447620] Chr7:72718277..74141603 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718277-74146948)x1 copy number loss See cases [RCV000446172] Chr7:72718277..74146948 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718277-74142215)x1 copy number loss See cases [RCV000447454] Chr7:72718277..74142215 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72692112-74141746)x3 copy number gain See cases [RCV000445755] Chr7:72692112..74141746 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72700524-74142190)x1 copy number loss See cases [RCV000447774] Chr7:72700524..74142190 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718277-74141784)x1 copy number loss See cases [RCV000448046] Chr7:72718277..74141784 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718123-74141746)x1 copy number loss See cases [RCV000448666] Chr7:72718123..74141746 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72472922-74259176)x3 copy number gain See cases [RCV000448344] Chr7:72472922..74259176 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72677301-74143240)x3 copy number gain See cases [RCV000512048] Chr7:72677301..74143240 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72700524-74142256)x3 copy number gain See cases [RCV000512105] Chr7:72700524..74142256 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72643631-74142190)x1 copy number loss See cases [RCV000512130] Chr7:72643631..74142190 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72691242-74142190)x1 copy number loss See cases [RCV000510243] Chr7:72691242..74142190 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718277-74287433)x1 copy number loss See cases [RCV000510195] Chr7:72718277..74287433 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718277-74259899)x1 copy number loss See cases [RCV000510198] Chr7:72718277..74259899 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707) copy number gain See cases [RCV000510686] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7q11.23(chr7:72701018-74141493)x1 copy number loss See cases [RCV000510144] Chr7:72701018..74141493 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3 copy number gain See cases [RCV000511549] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7q11.23(chr7:72718277-73898515)x1 copy number loss See cases [RCV000511510] Chr7:72718277..73898515 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718277-74146858)x1 copy number loss See cases [RCV000511528] Chr7:72718277..74146858 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72692112-74154497)x3 copy number gain See cases [RCV000511487] Chr7:72692112..74154497 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718277-74141494)x1 copy number loss See cases [RCV000511955] Chr7:72718277..74141494 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72677173-74143140)x3 copy number gain See cases [RCV000510884] Chr7:72677173..74143140 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718277-74141603)x1 copy number loss See cases [RCV000511254] Chr7:72718277..74141603 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72589515-74165401)x3 copy number gain See cases [RCV000510938] Chr7:72589515..74165401 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72456604-76007380)x1 copy number loss See cases [RCV000510782] Chr7:72456604..76007380 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72722981-73198616)x1 copy number loss See cases [RCV000515566] Chr7:72722981..73198616 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.1177C>T (p.Arg393Trp) single nucleotide variant not specified [RCV004282594] Chr7:73313208 [GRCh38]
Chr7:72727204 [GRCh37]
Chr7:7q11.23
uncertain significance
GRCh37/hg19 7q11.23(chr7:72718277-74141746)x1 copy number loss See cases [RCV000512220] Chr7:72718277..74141746 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72536980-74629034)x1 copy number loss See cases [RCV000512310] Chr7:72536980..74629034 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72577021-74197846)x3 copy number gain See cases [RCV000512328] Chr7:72577021..74197846 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72659674-74143240)x3 copy number gain See cases [RCV000512332] Chr7:72659674..74143240 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72686958-73113924)x3 copy number gain not provided [RCV000682843] Chr7:72686958..73113924 [GRCh37]
Chr7:7q11.23
uncertain significance
GRCh37/hg19 7q11.23(chr7:72608514-74386749)x1 copy number loss not provided [RCV000682892] Chr7:72608514..74386749 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72612042-74574641)x1 copy number loss not provided [RCV000682895] Chr7:72612042..74574641 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72701018-74143240)x3 copy number gain not provided [RCV000682886] Chr7:72701018..74143240 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72700524-74069858)x3 copy number gain not provided [RCV000682883] Chr7:72700524..74069858 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718123-74141784)x1 copy number loss not provided [RCV000682885] Chr7:72718123..74141784 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72576872-74175429)x3 copy number gain not provided [RCV000682888] Chr7:72576872..74175429 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72577021-74859638)x3 copy number gain not provided [RCV000682898] Chr7:72577021..74859638 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72589515-74386749)x1 copy number loss not provided [RCV000682894] Chr7:72589515..74386749 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72577021-74147166)x3 copy number gain not provided [RCV000682887] Chr7:72577021..74147166 [GRCh37]
Chr7:7q11.23
pathogenic
NC_000007.13:g.(20954043_21001537)_(114528369_114556605)inv inversion Childhood apraxia of speech [RCV000234948] Chr7:21001537..114528369 [GRCh37]
Chr7:7p15.3-q31.1
pathogenic
GRCh37/hg19 7q11.23(chr7:72719386-74218536)x1 copy number loss not provided [RCV000746793] Chr7:72719386..74218536 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72650265-74138603)x1 copy number loss not provided [RCV000746791] Chr7:72650265..74138603 [GRCh37]
Chr7:7q11.23
pathogenic
Single allele duplication Schizophrenia [RCV000754333] Chr7:73312644..74726596 [GRCh38]
Chr7:7q11.23
pathogenic
Single allele duplication Autism [RCV000754334] Chr7:73323103..74726596 [GRCh38]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3 copy number gain not provided [RCV000746278] Chr7:10704..159122532 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3 copy number gain not provided [RCV000746280] Chr7:44935..159126310 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7q11.23(chr7:72653306-74134911)x1 copy number loss not provided [RCV000746792] Chr7:72653306..74134911 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72722981-74200092)x1 copy number loss not provided [RCV000746794] Chr7:72722981..74200092 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72305671-74196360)x1 copy number loss not provided [RCV000746789] Chr7:72305671..74196360 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72650106-74138603)x1 copy number loss not provided [RCV000746790] Chr7:72650106..74138603 [GRCh37]
Chr7:7q11.23
pathogenic
Single allele duplication Intestinal malrotation [RCV000754986] Chr7:72634873..74142327 [GRCh37]
Chr7:7q11.23
likely pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3 copy number gain not provided [RCV000848126] Chr7:10365..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7q11.23(chr7:72700996-74142190) copy number loss Williams syndrome [RCV000767639] Chr7:72700996..74142190 [GRCh37]
Chr7:7q11.23
pathogenic
NM_178125.3(TRIM50):c.1444G>A (p.Glu482Lys) single nucleotide variant not specified [RCV004332767] Chr7:73312941 [GRCh38]
Chr7:72726937 [GRCh37]
Chr7:7q11.23
uncertain significance
Single allele deletion not provided [RCV000768460] Chr7:72682338..74141250 [GRCh37]
Chr7:7q11.23
likely pathogenic
Single allele deletion Neurodevelopmental disorder [RCV000787465] Chr7:72699382..74142329 [GRCh37]
Chr7:7q11.23
pathogenic
Single allele deletion Neurodevelopmental disorder [RCV000787466] Chr7:72726590..74142329 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72621722-76007380)x1 copy number loss not provided [RCV001005967] Chr7:72621722..76007380 [GRCh37]
Chr7:7q11.23
pathogenic
Single allele duplication Neurodevelopmental disorder [RCV000787457] Chr7:72364526..73780265 [GRCh37]
Chr7:7q11.23
likely pathogenic
GRCh37/hg19 7q11.23(chr7:72700510-72874856)x3 copy number gain not provided [RCV000847348] Chr7:72700510..72874856 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.268G>A (p.Val90Met) single nucleotide variant not specified [RCV004304275] Chr7:73324520 [GRCh38]
Chr7:72738518 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.766G>A (p.Ala256Thr) single nucleotide variant not specified [RCV004304321] Chr7:73316673 [GRCh38]
Chr7:72730672 [GRCh37]
Chr7:7q11.23
uncertain significance
GRCh37/hg19 7q11.23(chr7:72717395-74173168) copy number loss Williams syndrome [RCV003236746] Chr7:72717395..74173168 [GRCh37]
Chr7:7q11.23
pathogenic
NM_178125.3(TRIM50):c.92G>T (p.Cys31Phe) single nucleotide variant not specified [RCV004298498] Chr7:73324696 [GRCh38]
Chr7:72738694 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.363G>A (p.Pro121=) single nucleotide variant not provided [RCV000909370] Chr7:73324425 [GRCh38]
Chr7:72738423 [GRCh37]
Chr7:7q11.23
benign
GRCh37/hg19 7q11.23(chr7:72654782-74142190)x1 copy number loss not provided [RCV002472631] Chr7:72654782..74142190 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72643632-74143060)x1 copy number loss not provided [RCV002472618] Chr7:72643632..74143060 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718278-72822709)x3 copy number gain not provided [RCV002473807] Chr7:72718278..72822709 [GRCh37]
Chr7:7q11.23
uncertain significance
GRCh37/hg19 7q11.23(chr7:72722981-74141840)x3 copy number gain See cases [RCV001194543] Chr7:72722981..74141840 [GRCh37]
Chr7:7q11.23
pathogenic
Single allele deletion Williams syndrome [RCV001172267] Chr7:72657228..74160300 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.22-11.23(chr7:68977230-73939510)x1 copy number loss not provided [RCV001260005] Chr7:68977230..73939510 [GRCh37]
Chr7:7q11.22-11.23
pathogenic
Single allele complex Ring chromosome 7 [RCV002280646] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7q11.23(chr7:72718277-74142190)x1 copy number loss See cases [RCV002285079] Chr7:72718277..74142190 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718123-74141784) copy number loss Williams syndrome [RCV002280679] Chr7:72718123..74141784 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72700996-74142256) copy number loss Williams syndrome [RCV002280681] Chr7:72700996..74142256 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72659674-74164894)x3 copy number gain not provided [RCV001258797] Chr7:72659674..74164894 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72403117-76709600)x1 copy number loss not provided [RCV001258798] Chr7:72403117..76709600 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.22-11.23(chr7:71847968-73391310) copy number loss Williams syndrome [RCV001352633] Chr7:71847968..73391310 [GRCh37]
Chr7:7q11.22-11.23
likely pathogenic
GRCh37/hg19 7q11.23(chr7:72717369-74142224)x1 copy number loss not provided [RCV001270666] Chr7:72717369..74142224 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718123-74142190) copy number loss Williams syndrome [RCV002280674] Chr7:72718123..74142190 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72589195-74225562) copy number loss Williams syndrome [RCV002280675] Chr7:72589195..74225562 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72717345-74133310)x3 copy number gain Distal 7q11.23 microdeletion syndrome [RCV001801209] Chr7:72717345..74133310 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72589515-74629034) copy number loss Williams syndrome [RCV002280676] Chr7:72589515..74629034 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72701084-74142190) copy number loss Williams syndrome [RCV002280683] Chr7:72701084..74142190 [GRCh37]
Chr7:7q11.23
pathogenic
NM_178125.3(TRIM50):c.1352A>C (p.Tyr451Ser) single nucleotide variant not specified [RCV004301713] Chr7:73313033 [GRCh38]
Chr7:72727029 [GRCh37]
Chr7:7q11.23
uncertain significance
NC_000007.14:g.73304277_74727414del deletion Williams syndrome [RCV003318489] Chr7:73304277..74727414 [GRCh38]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72645013-74142190) copy number loss Williams syndrome [RCV002280678] Chr7:72645013..74142190 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72700942-74142190) copy number loss Williams syndrome [RCV002280682] Chr7:72700942..74142190 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:56604613-96692931)x1 copy number loss See cases [RCV002287832] Chr7:56604613..96692931 [GRCh37]
Chr7:7p22.3-q36.3
uncertain significance
GRCh37/hg19 7q11.23(chr7:72686958-74155067) copy number gain 7q11.23 microduplication syndrome [RCV002280765] Chr7:72686958..74155067 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72700127-74142190) copy number loss Williams syndrome [RCV002280684] Chr7:72700127..74142190 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718278-74142256)x1 copy number loss not provided [RCV002472548] Chr7:72718278..74142256 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718278-74143060)x1 copy number loss not provided [RCV002474679] Chr7:72718278..74143060 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718278-74143240)x1 copy number loss not provided [RCV002473955] Chr7:72718278..74143240 [GRCh37]
Chr7:7q11.23
pathogenic
NM_178125.3(TRIM50):c.947T>G (p.Val316Gly) single nucleotide variant not specified [RCV004201890] Chr7:73313438 [GRCh38]
Chr7:72727434 [GRCh37]
Chr7:7q11.23
uncertain significance
Single allele deletion Williams syndrome [RCV003234736] Chr7:73214501..74773500 [GRCh38]
Chr7:7q11.23
pathogenic
NM_178125.3(TRIM50):c.1125G>C (p.Lys375Asn) single nucleotide variant not specified [RCV004146710] Chr7:73313260 [GRCh38]
Chr7:72727256 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.488G>A (p.Arg163Gln) single nucleotide variant not specified [RCV004159742] Chr7:73320154 [GRCh38]
Chr7:72734153 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.605G>A (p.Arg202His) single nucleotide variant not specified [RCV004136831] Chr7:73318943 [GRCh38]
Chr7:72732942 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.1171G>A (p.Glu391Lys) single nucleotide variant not specified [RCV004147358] Chr7:73313214 [GRCh38]
Chr7:72727210 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.368C>T (p.Thr123Met) single nucleotide variant not specified [RCV004206210] Chr7:73324420 [GRCh38]
Chr7:72738418 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.128T>C (p.Leu43Pro) single nucleotide variant not specified [RCV004139455] Chr7:73324660 [GRCh38]
Chr7:72738658 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.1423G>C (p.Gly475Arg) single nucleotide variant not specified [RCV004148473] Chr7:73312962 [GRCh38]
Chr7:72726958 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.460A>G (p.Ile154Val) single nucleotide variant not specified [RCV004179705] Chr7:73320182 [GRCh38]
Chr7:72734181 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.525C>G (p.Ile175Met) single nucleotide variant not specified [RCV004119259] Chr7:73319023 [GRCh38]
Chr7:72733022 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.470T>C (p.Leu157Pro) single nucleotide variant not specified [RCV004213324] Chr7:73320172 [GRCh38]
Chr7:72734171 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.1405G>A (p.Val469Met) single nucleotide variant not specified [RCV004117152] Chr7:73312980 [GRCh38]
Chr7:72726976 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.527G>A (p.Arg176His) single nucleotide variant not specified [RCV004213827] Chr7:73319021 [GRCh38]
Chr7:72733020 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.1150G>T (p.Val384Leu) single nucleotide variant not specified [RCV004219088] Chr7:73313235 [GRCh38]
Chr7:72727231 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.1084C>T (p.Arg362Cys) single nucleotide variant not specified [RCV004172865] Chr7:73313301 [GRCh38]
Chr7:72727297 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.368C>A (p.Thr123Lys) single nucleotide variant not specified [RCV004223022] Chr7:73324420 [GRCh38]
Chr7:72738418 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.1024C>T (p.Arg342Cys) single nucleotide variant not specified [RCV004156702] Chr7:73313361 [GRCh38]
Chr7:72727357 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.389G>A (p.Ser130Asn) single nucleotide variant not specified [RCV004175451] Chr7:73324399 [GRCh38]
Chr7:72738397 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.784G>A (p.Ala262Thr) single nucleotide variant not specified [RCV004099425] Chr7:73316655 [GRCh38]
Chr7:72730654 [GRCh37]
Chr7:7q11.23
likely benign
NM_178125.3(TRIM50):c.481C>T (p.Arg161Trp) single nucleotide variant not specified [RCV004231643] Chr7:73320161 [GRCh38]
Chr7:72734160 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.272A>G (p.His91Arg) single nucleotide variant not specified [RCV004147247] Chr7:73324516 [GRCh38]
Chr7:72738514 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.592G>C (p.Gly198Arg) single nucleotide variant not specified [RCV004193132] Chr7:73318956 [GRCh38]
Chr7:72732955 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.169C>T (p.Arg57Trp) single nucleotide variant not specified [RCV004194112] Chr7:73324619 [GRCh38]
Chr7:72738617 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.50C>T (p.Pro17Leu) single nucleotide variant not specified [RCV004172047] Chr7:73324738 [GRCh38]
Chr7:72738736 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.56G>A (p.Cys19Tyr) single nucleotide variant not specified [RCV004114464] Chr7:73324732 [GRCh38]
Chr7:72738730 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.1237C>T (p.Arg413Cys) single nucleotide variant not specified [RCV004093872] Chr7:73313148 [GRCh38]
Chr7:72727144 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.107G>T (p.Cys36Phe) single nucleotide variant not specified [RCV004275787] Chr7:73324681 [GRCh38]
Chr7:72738679 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.1238G>A (p.Arg413His) single nucleotide variant not specified [RCV004267476] Chr7:73313147 [GRCh38]
Chr7:72727143 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.226G>A (p.Glu76Lys) single nucleotide variant not specified [RCV004249205] Chr7:73324562 [GRCh38]
Chr7:72738560 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.440A>G (p.Gln147Arg) single nucleotide variant not specified [RCV004249996] Chr7:73320202 [GRCh38]
Chr7:72734201 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.859C>T (p.Arg287Trp) single nucleotide variant not specified [RCV004266901] Chr7:73316580 [GRCh38]
Chr7:72730579 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.154C>T (p.Arg52Cys) single nucleotide variant not specified [RCV004251707] Chr7:73324634 [GRCh38]
Chr7:72738632 [GRCh37]
Chr7:7q11.23
uncertain significance
GRCh38/hg38 7q11.23(chr7:73229597-74727852) copy number loss Williams syndrome [RCV003223593] Chr7:73229597..74727852 [GRCh38]
Chr7:7q11.23
pathogenic
NM_178125.3(TRIM50):c.889A>G (p.Lys297Glu) single nucleotide variant not specified [RCV004266285] Chr7:73313496 [GRCh38]
Chr7:72727492 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.394A>G (p.Met132Val) single nucleotide variant not specified [RCV004267656] Chr7:73324394 [GRCh38]
Chr7:72738392 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.268G>C (p.Val90Leu) single nucleotide variant not specified [RCV004249483] Chr7:73324520 [GRCh38]
Chr7:72738518 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.477C>A (p.Asn159Lys) single nucleotide variant not specified [RCV004684741] Chr7:73320165 [GRCh38]
Chr7:72734164 [GRCh37]
Chr7:7q11.23
uncertain significance
GRCh37/hg19 7q11.23(chr7:72664461-74162586) copy number gain 7q11.23 microduplication syndrome [RCV003319591] Chr7:72664461..74162586 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718277-74142256) copy number gain 7q11.23 microduplication syndrome [RCV003320440] Chr7:72718277..74142256 [GRCh37]
Chr7:7q11.23
pathogenic
NM_178125.3(TRIM50):c.1204C>G (p.Arg402Gly) single nucleotide variant not specified [RCV004342680] Chr7:73313181 [GRCh38]
Chr7:72727177 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.194C>T (p.Ser65Phe) single nucleotide variant not specified [RCV004346945] Chr7:73324594 [GRCh38]
Chr7:72738592 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.955G>C (p.Gly319Arg) single nucleotide variant not specified [RCV004340690] Chr7:73313430 [GRCh38]
Chr7:72727426 [GRCh37]
Chr7:7q11.23
uncertain significance
GRCh37/hg19 7q11.23(chr7:72547476-74263704)x3 copy number gain not provided [RCV003484684] Chr7:72547476..74263704 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72718278-72818671)x1 copy number loss not provided [RCV003482964] Chr7:72718278..72818671 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.1224C>T (p.Ala408=) single nucleotide variant not provided [RCV003433859] Chr7:73313161 [GRCh38]
Chr7:72727157 [GRCh37]
Chr7:7q11.23
likely benign
NM_178125.3(TRIM50):c.1419C>A (p.Pro473=) single nucleotide variant not provided [RCV003433858] Chr7:73312966 [GRCh38]
Chr7:72726962 [GRCh37]
Chr7:7q11.23
likely benign
GRCh37/hg19 7q11.23(chr7:72732819-76003862)x3 copy number gain not specified [RCV003986700] Chr7:72732819..76003862 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh37/hg19 7q11.21-11.23(chr7:66776724-74629034)x3 copy number gain not specified [RCV003986715] Chr7:66776724..74629034 [GRCh37]
Chr7:7q11.21-11.23
pathogenic
GRCh37/hg19 7q11.23(chr7:72701099-74186150)x3 copy number gain not provided [RCV004442782] Chr7:72701099..74186150 [GRCh37]
Chr7:7q11.23
pathogenic
GRCh38/hg38 7q11.23(chr7:73247356-74727974)x3 copy number gain 7q11.23 microduplication syndrome [RCV004556973] Chr7:73247356..74727974 [GRCh38]
Chr7:7q11.23
pathogenic
NM_178125.3(TRIM50):c.1042C>T (p.Arg348Cys) single nucleotide variant not specified [RCV004475960] Chr7:73313343 [GRCh38]
Chr7:72727339 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.623T>C (p.Leu208Pro) single nucleotide variant not specified [RCV004475966] Chr7:73318925 [GRCh38]
Chr7:72732924 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.1136C>T (p.Ser379Phe) single nucleotide variant not specified [RCV004475961] Chr7:73313249 [GRCh38]
Chr7:72727245 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.1378G>C (p.Glu460Gln) single nucleotide variant not specified [RCV004475962] Chr7:73313007 [GRCh38]
Chr7:72727003 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.256C>G (p.Pro86Ala) single nucleotide variant not specified [RCV004475963] Chr7:73324532 [GRCh38]
Chr7:72738530 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.25G>A (p.Glu9Lys) single nucleotide variant not specified [RCV004475964] Chr7:73324763 [GRCh38]
Chr7:72738761 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.338T>A (p.Leu113Gln) single nucleotide variant not specified [RCV004475965] Chr7:73324450 [GRCh38]
Chr7:72738448 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.770G>A (p.Arg257Gln) single nucleotide variant not specified [RCV004475968] Chr7:73316669 [GRCh38]
Chr7:72730668 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.890A>G (p.Lys297Arg) single nucleotide variant not specified [RCV004475969] Chr7:73313495 [GRCh38]
Chr7:72727491 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.991C>T (p.Arg331Cys) single nucleotide variant not specified [RCV004687672] Chr7:73313394 [GRCh38]
Chr7:72727390 [GRCh37]
Chr7:7q11.23
uncertain significance
NC_000007.14:g.(?_73303398)_(74735532_?)del deletion Williams syndrome [RCV004586468] Chr7:73303398..74735532 [GRCh38]
Chr7:7q11.23
likely pathogenic
NM_178125.3(TRIM50):c.1162G>A (p.Gly388Ser) single nucleotide variant not specified [RCV004687671] Chr7:73313223 [GRCh38]
Chr7:72727219 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.1085G>A (p.Arg362His) single nucleotide variant not specified [RCV004687668] Chr7:73313300 [GRCh38]
Chr7:72727296 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.656G>A (p.Arg219Gln) single nucleotide variant not specified [RCV004687669] Chr7:73318892 [GRCh38]
Chr7:72732891 [GRCh37]
Chr7:7q11.23
likely benign
NM_178125.3(TRIM50):c.205G>A (p.Val69Ile) single nucleotide variant not specified [RCV004684739] Chr7:73324583 [GRCh38]
Chr7:72738581 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.13G>A (p.Val5Met) single nucleotide variant not specified [RCV004684740] Chr7:73324775 [GRCh38]
Chr7:72738773 [GRCh37]
Chr7:7q11.23
uncertain significance
NM_178125.3(TRIM50):c.578G>A (p.Cys193Tyr) single nucleotide variant not specified [RCV004684742] Chr7:73318970 [GRCh38]
Chr7:72732969 [GRCh37]
Chr7:7q11.23
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1170
Count of miRNA genes:644
Interacting mature miRNAs:734
Transcripts:ENST00000333149, ENST00000453152, ENST00000488217, ENST00000493498
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1183 2253 2595 1964 4362 1606 1982 2 545 1045 394 2034 5807 5187 17 3315 715 1541 1357 155

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001281450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001281451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011515787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011515788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011515789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054357228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054357229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054357230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054357231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC073841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC211485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC211540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI208986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY081948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY081949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC112152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC112154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC143787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA045168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA632418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY014417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000333149   ⟹   ENSP00000327994
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl773,312,536 - 73,328,082 (-)Ensembl
Ensembl Acc Id: ENST00000453152   ⟹   ENSP00000413875
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl773,312,911 - 73,325,571 (-)Ensembl
Ensembl Acc Id: ENST00000488217
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl773,313,341 - 73,316,942 (-)Ensembl
Ensembl Acc Id: ENST00000493498
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl773,321,899 - 73,327,954 (-)Ensembl
RefSeq Acc Id: NM_001281450   ⟹   NP_001268379
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38773,312,536 - 73,328,082 (-)NCBI
GRCh37772,726,532 - 72,742,085 (-)NCBI
HuRef768,608,274 - 68,623,822 (-)NCBI
CHM1_1772,872,558 - 72,888,104 (-)NCBI
T2T-CHM13v2.0774,512,695 - 74,528,253 (-)NCBI
CRA_TCAGchr7v2772,059,604 - 72,075,157 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001281451   ⟹   NP_001268380
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38773,312,536 - 73,325,575 (-)NCBI
GRCh37772,726,532 - 72,742,085 (-)NCBI
HuRef768,608,274 - 68,623,822 (-)NCBI
CHM1_1772,872,558 - 72,885,597 (-)NCBI
T2T-CHM13v2.0774,512,695 - 74,525,747 (-)NCBI
CRA_TCAGchr7v2772,059,604 - 72,075,157 (-)NCBI
Sequence:
RefSeq Acc Id: NM_178125   ⟹   NP_835226
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38773,312,536 - 73,328,082 (-)NCBI
GRCh37772,726,532 - 72,742,085 (-)NCBI
Build 36772,364,471 - 72,380,021 (-)NCBI Archive
Celera768,204,827 - 68,220,367 (-)RGD
HuRef768,608,274 - 68,623,822 (-)NCBI
CHM1_1772,872,558 - 72,888,104 (-)NCBI
T2T-CHM13v2.0774,512,695 - 74,528,253 (-)NCBI
CRA_TCAGchr7v2772,059,604 - 72,075,157 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011515787   ⟹   XP_011514089
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38773,312,536 - 73,325,575 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011515788   ⟹   XP_011514090
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38773,312,536 - 73,328,082 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011515789   ⟹   XP_011514091
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38773,312,536 - 73,325,575 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047419880   ⟹   XP_047275836
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38773,312,536 - 73,328,082 (-)NCBI
RefSeq Acc Id: XM_054357228   ⟹   XP_054213203
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0774,512,695 - 74,525,747 (-)NCBI
RefSeq Acc Id: XM_054357229   ⟹   XP_054213204
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0774,512,695 - 74,525,747 (-)NCBI
RefSeq Acc Id: XM_054357230   ⟹   XP_054213205
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0774,512,695 - 74,528,253 (-)NCBI
RefSeq Acc Id: XM_054357231   ⟹   XP_054213206
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0774,512,695 - 74,528,253 (-)NCBI
RefSeq Acc Id: NP_835226   ⟸   NM_178125
- Peptide Label: isoform a
- UniProtKB: Q86XT4 (UniProtKB/Swiss-Prot),   Q86XT3 (UniProtKB/Swiss-Prot),   Q2M204 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001268379   ⟸   NM_001281450
- Peptide Label: isoform b
- UniProtKB: B7ZLG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001268380   ⟸   NM_001281451
- Peptide Label: isoform a
- UniProtKB: Q86XT4 (UniProtKB/Swiss-Prot),   Q86XT3 (UniProtKB/Swiss-Prot),   Q2M204 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011514090   ⟸   XM_011515788
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011514089   ⟸   XM_011515787
- Peptide Label: isoform X2
- UniProtKB: I3L0H3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011514091   ⟸   XM_011515789
- Peptide Label: isoform X1
- UniProtKB: B7ZLG2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000327994   ⟸   ENST00000333149
Ensembl Acc Id: ENSP00000413875   ⟸   ENST00000453152
RefSeq Acc Id: XP_047275836   ⟸   XM_047419880
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054213206   ⟸   XM_054357231
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054213205   ⟸   XM_054357230
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054213203   ⟸   XM_054357228
- Peptide Label: isoform X1
- UniProtKB: B7ZLG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054213204   ⟸   XM_054357229
- Peptide Label: isoform X2
Protein Domains
B box-type   B30.2/SPRY   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q86XT4-F1-model_v2 AlphaFold Q86XT4 1-487 view protein structure

Promoters
RGD ID:7210759
Promoter ID:EPDNEW_H11124
Type:initiation region
Name:TRIM50_1
Description:tripartite motif containing 50
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38773,325,574 - 73,325,634EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:19017 AgrOrtholog
COSMIC TRIM50 COSMIC
Ensembl Genes ENSG00000146755 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000333149 ENTREZGENE
  ENST00000333149.7 UniProtKB/Swiss-Prot
  ENST00000453152 ENTREZGENE
  ENST00000453152.1 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000146755 GTEx
HGNC ID HGNC:19017 ENTREZGENE
Human Proteome Map TRIM50 Human Proteome Map
InterPro B30.2/SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRIM/RBCC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf-RING_LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_B-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:135892 UniProtKB/Swiss-Prot
NCBI Gene TRIM50 ENTREZGENE
OMIM 612548 OMIM
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE TRIM50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-B_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RING_UBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA38778 PharmGKB
PRINTS BUTYPHLNCDUF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B7ZLG2 ENTREZGENE, UniProtKB/TrEMBL
  I3L0H3 ENTREZGENE
  Q2M204 ENTREZGENE
  Q86XT3 ENTREZGENE
  Q86XT4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q2M204 UniProtKB/Swiss-Prot
  Q86XT3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 TRIM50  tripartite motif containing 50  TRIM50  tripartite motif-containing 50  Symbol and/or name change 5135510 APPROVED