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Gene: Rpl39 (ribosomal protein L39) Mus musculus

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Symbol:

Rpl39

Name:

ribosomal protein L39

RGD ID:

735613

MGI Page

MGI

Description:

A structural constituent of ribosome. Involved in cytoplasmic translation. Located in cytoplasm. Part of cytosolic large ribosomal subunit. Is expressed in 1-cell stage embryo; 2-cell stage embryo; and 4-cell stage embryo. Orthologous to human RPL39 (ribosomal protein L39).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2810465O16Rik; 60S ribosomal protein L39; large ribosomal subunit protein eL39

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPL39 (ribosomal protein L39)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Rattus norvegicus (Norway rat):	Rpl39 (ribosomal protein L39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rpl39 (ribosomal protein L39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPL39 (ribosomal protein L39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC100687285 (60S ribosomal protein L39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rpl39 (ribosomal protein L39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPL39 (ribosomal protein L39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPL39 (ribosomal protein L39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rpl39 (ribosomal protein L39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RPL39L (ribosomal protein L39 like)	HGNC	OMA
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Rpl39 (ribosomal protein L39)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RPL39 (ribosomal protein L39)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Rpl39-ps14 (ribosomal protein L39, pseudogene 14)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Rpl39-ps12 (ribosomal protein L39, pseudogene 12)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Rpl39-ps10 (ribosomal protein L39, pseudogene 10)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Rpl39-ps11 (ribosomal protein L39, pseudogene 11)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Rpl31-ps12 (ribosomal protein L31, pseudogene 12)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Rpl39-ps13 (ribosomal protein L39, pseudogene 13)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rpl39 (ribosomal protein L39)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Caenorhabditis elegans (roundworm):	rpl-39	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RPL39	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RpL39	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rpl39	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)

Related Pseudogenes:

Gm15148 Gm19366 Gm19399 Gm32211 Rpl39-ps

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	36,346,169 - 36,348,852 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	36,346,173 - 36,349,055 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	37,082,518 - 37,085,222 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	37,082,520 - 37,085,402 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	34,622,515 - 34,625,179 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	33,513,965 - 33,516,629 (-)	NCBI		MGSCv36	mm8
Celera	X	23,806,150 - 23,808,814 (-)	NCBI		Celera
Cytogenetic Map	X	A3.3	NCBI
cM Map	X	21.5	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

autosomal hemophilia A (ISO)

factor VIII deficiency (ISO)

syndromic X-linked intellectual disability 14 (ISO)

syndromic X-linked intellectual disability Cabezas type (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (EXP)

1,2-dimethylhydrazine (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3',4,4',5-Pentachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-bromohexadecanoic acid (ISO)

3-chloropropane-1,2-diol (ISO)

4-hydroxyphenyl retinamide (EXP)

acrylamide (ISO)

ammonium chloride (ISO)

Aroclor 1254 (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (EXP,ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (EXP)

chlordecone (EXP)

chloropicrin (ISO)

chromium(6+) (EXP)

cisplatin (ISO)

clobetasol (EXP)

copper(II) sulfate (EXP,ISO)

cylindrospermopsin (EXP)

dibutyl phthalate (ISO)

dicrotophos (ISO)

elemental selenium (ISO)

epoxiconazole (EXP)

ethanol (EXP)

fenvalerate (ISO)

flavonoids (ISO)

folic acid (EXP)

fulvestrant (ISO)

genistein (ISO)

hydralazine (ISO)

hydrogen peroxide (ISO)

methidathion (EXP)

methylparaben (ISO)

mifepristone (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorodecanoic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (EXP)

phenanthrene (ISO)

resveratrol (EXP)

selenium atom (ISO)

simvastatin (EXP)

sodium arsenite (EXP)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (ISO)

thiram (ISO)

titanium dioxide (EXP)

trichloroethene (ISO)

triphenyl phosphate (ISO)

tungsten (EXP)

valproic acid (ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antibacterial humoral response (ISO)

antimicrobial humoral immune response mediated by antimicrobial peptide (ISO)

cytoplasmic translation (IMP,ISO,NAS)

defense response to Gram-positive bacterium (ISO)

innate immune response in mucosa (ISO)

Cellular Component

cytoplasm (IDA)

cytosol (TAS)

cytosolic large ribosomal subunit (IBA,IDA,IPI,ISO)

cytosolic ribosome (ISO)

extracellular space (ISO)

Molecular Function

protein binding (IPI)

structural constituent of ribosome (IDA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

translation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Structures of the human and Drosophila 80S ribosome.	Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
4.	MGDs mouse GO annotations	MGD data from the GO Consortium
5.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:12477932	PMID:14610273	PMID:15489334	PMID:16141072	PMID:16141073	PMID:18799693	PMID:21529712	PMID:21677750
PMID:21873635	PMID:22404850	PMID:24457600	PMID:25901680	PMID:31000741	PMID:32325033	PMID:34428590	PMID:35099001	PMID:36517592

Genomics

Comparative Map Data

Rpl39
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	36,346,169 - 36,348,852 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	36,346,173 - 36,349,055 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	37,082,518 - 37,085,222 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	37,082,520 - 37,085,402 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	34,622,515 - 34,625,179 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	33,513,965 - 33,516,629 (-)	NCBI		MGSCv36	mm8
Celera	X	23,806,150 - 23,808,814 (-)	NCBI		Celera
Cytogenetic Map	X	A3.3	NCBI
cM Map	X	21.5	NCBI

RPL39
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	119,786,504 - 119,791,630 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	119,786,504 - 119,791,630 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	118,920,467 - 118,925,593 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	118,804,497 - 118,809,634 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	118,702,350 - 118,707,488	NCBI
Celera	X	119,375,089 - 119,380,226 (-)	NCBI		Celera
Cytogenetic Map	X	q24	NCBI
HuRef	X	108,414,000 - 108,419,138 (-)	NCBI		HuRef
CHM1_1	X	118,831,549 - 118,836,703 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	118,161,629 - 118,166,754 (-)	NCBI		T2T-CHM13v2.0

Rpl39
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	121,192,901 - 121,195,896 (-)	NCBI		GRCr8
mRatBN7.2	X	116,327,216 - 116,330,211 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	116,327,094 - 116,330,304 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	20	17,253,931 - 17,254,086 (+)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	15	20,118,923 - 20,119,078 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	X	31,984,332 - 31,984,487 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	7	29,834,988 - 29,835,143 (+)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	18	6,326,330 - 6,326,692 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	118,430,743 - 118,433,782 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	121,999,885 - 122,002,924 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	119,545,777 - 119,548,828 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	123,705,241 - 123,707,257 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	123,705,235 - 123,708,211 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	123,841,669 - 123,843,685 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	7,825,919 - 7,827,935 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	7,830,555 - 7,833,491 (+)	NCBI
Celera	X	115,554,572 - 115,556,588 (-)	NCBI		Celera
Cytogenetic Map	X	q35	NCBI

Rpl39
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955534	200,591 - 203,827 (+)	NCBI	ChiLan1.0	ChiLan1.0

RPL39
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	119,167,811 - 119,173,033 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	119,171,415 - 119,176,588 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	108,818,773 - 108,823,935 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	119,243,623 - 119,248,916 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	119,243,624 - 119,248,916 (-)	Ensembl	panpan1.1		panPan2

LOC100687285
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	3,404,495 - 3,411,279 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	3,412,178 - 3,419,003 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	3,461,129 - 3,467,957 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	35	3,336,550 - 3,343,086 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	3,358,282 - 3,365,107 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	4,690,923 - 4,697,748 (-)	NCBI		UU_Cfam_GSD_1.0

Rpl39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	90,850,993 - 90,854,543 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936479	10,132,965 - 10,136,506 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPL39
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	98,178,155 - 98,181,598 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	98,178,148 - 98,181,439 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	113,430,973 - 113,434,240 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPL39
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666065	32,567,895 - 32,573,168 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rpl39
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624895	3,748,059 - 3,752,199 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rpl39
48 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	327
Count of miRNA genes:	283
Interacting mature miRNAs:	305
Transcripts:	ENSMUST00000115231, ENSMUST00000131149, ENSMUST00000138799
Prediction methods:	Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13208553	Wght11_m	weight 11 (mouse)					X	11866239	59045360	Mouse
12738418	Lfibq12_m	liver fibrosis QTL 12 (mouse)					X	25728174	43635700	Mouse
27226750	Femd9_m	femur midshaft diameter 9, 10 week (mouse)					X	33337463	55845360	Mouse
27226780	Femd12_m	femur midshaft diameter 12, 16 week (mouse)					X	34663653	56845360	Mouse
13208557	Lgth13_m	body length 13 (mouse)					X	11866239	59045360	Mouse
1558721	Bw1_m	body weight QTL 1 (mouse)			Not determined		X	20606783	47179225	Mouse
1301551	Spha1_m	sperm head anomaly 1 (mouse)			Not determined		X	10266225	39921652	Mouse
1357433	Dbts2_m	diabetes 2 (mouse)			Not determined		X	7226295	150107038	Mouse
13208567	Bmiq12_m	body mass index QTL 12 (mouse)					X	35263653	77043606	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_026055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK002591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK005511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK007821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK008853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK013381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK028139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK088761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK150955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL451076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC039092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC094645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC139247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC139249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY150278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY705714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000115231 ⟹ ENSMUSP00000110886

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	36,346,173 - 36,349,055 (-)	Ensembl
GRCm38.p6 Ensembl	X	37,082,520 - 37,085,402 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000131149

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	36,348,190 - 36,348,809 (-)	Ensembl
GRCm38.p6 Ensembl	X	37,084,537 - 37,085,156 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000138799

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	36,347,296 - 36,348,819 (-)	Ensembl
GRCm38.p6 Ensembl	X	37,083,643 - 37,085,166 (-)	Ensembl

RefSeq Acc Id:

NM_026055 ⟹ NP_080331

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	36,346,169 - 36,348,852 (-)	NCBI
GRCm38	X	37,082,518 - 37,085,222 (-)	NCBI
MGSCv37	X	34,622,515 - 34,625,179 (-)	RGD
Celera	X	23,806,150 - 23,808,814 (-)	RGD
cM Map	X		ENTREZGENE

Sequence:

show sequence

TAGCGACTTCTTCTAATCGCGTTCTTCCGGTCCCGGCCTTTCTCTTCTCCATTCCTCCGCCATC
GTGCGCGCTATTCTTGATTCGGCTTCTCGCCATGTCTTCTCACAAGACTTTCCGAATCAAGCGA
TTCCTGGCCAAGAAACAAAAGCAAAATCGCCCTATTCCTCAGTGGATCCGGATGAAAACTGGTA
ACAAAATCAGGTACAACTCTAAGAGAAGACACTGGAGGAGAACGAAGCTGGGTCTGTAAGGATT
CACACAATGGCAAGACTGAGGATTTATACTGAATTGTCATCAATCAGTCCTACCAGATGGATTT
CAACATTTAAACCTGGAGACTCTTCGTGTCTTGAATTAGGATGTTTGTCCAGTAATAAAATATA
GAACCTTTCAAAATGCTTTTCTGGTTTATAAAGTACTGAATTGCCCTTAT

hide sequence

Protein Sequences


Protein RefSeqs	NP_080331	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH39092	(Get FASTA)	NCBI Sequence Viewer
	AAH94645	(Get FASTA)	NCBI Sequence Viewer
	AAI39248	(Get FASTA)	NCBI Sequence Viewer
	AAI39250	(Get FASTA)	NCBI Sequence Viewer
	BAB22212	(Get FASTA)	NCBI Sequence Viewer
	BAB24090	(Get FASTA)	NCBI Sequence Viewer
	BAB25284	(Get FASTA)	NCBI Sequence Viewer
	BAB25930	(Get FASTA)	NCBI Sequence Viewer
	BAB28820	(Get FASTA)	NCBI Sequence Viewer
	BAC25767	(Get FASTA)	NCBI Sequence Viewer
	BAC40552	(Get FASTA)	NCBI Sequence Viewer
	BAE27421	(Get FASTA)	NCBI Sequence Viewer
	BAE29987	(Get FASTA)	NCBI Sequence Viewer
	BAE40609	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000110886
	ENSMUSP00000110886.4
GenBank Protein	P62892	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_080331 ⟸ NM_026055
- UniProtKB:	P62892 (UniProtKB/Swiss-Prot), Q505A8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL hide sequence

Ensembl Acc Id:

ENSMUSP00000110886 ⟸ ENSMUST00000115231

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P62892-F1-model_v2	AlphaFold	P62892	1-51	view protein structure

Promoters

RGD ID:

6846330

Promoter ID:

MM_KWN:60017

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

OTTMUST00000041420, OTTMUST00000044933, OTTMUST00000044934

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	X	34,625,101 - 34,625,662 (-)	MPROMDB

RGD ID:

13680286

Promoter ID:

EPDNEW_M24292

Type:

initiation region

Name:

Rpl39_1

Description:

Mus musculus ribosomal protein L39 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	X	37,085,185 - 37,085,245	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1914498	AgrOrtholog
Ensembl Genes	ENSMUSG00000079641	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000115231	ENTREZGENE
	ENSMUST00000115231.4	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.1620.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Ribosomal_L39	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L39_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_L39e_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:67248	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1914498	ENTREZGENE
NCBI Gene	67248	ENTREZGENE
PANTHER	60S RIBOSOMAL PROTEIN L39	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RIBOSOMAL PROTEIN L39E	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Ribosomal_L39	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rpl39	PhenoGen
PROSITE	RIBOSOMAL_L39E	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF48662	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	P62892	ENTREZGENE
	Q505A8	ENTREZGENE, UniProtKB/TrEMBL
	RL39_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	P02404	UniProtKB/Swiss-Prot
	P39025	UniProtKB/Swiss-Prot
	Q9BYF2	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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