RPL39 (ribosomal protein L39) - Rat Genome Database

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Gene: RPL39 (ribosomal protein L39) Pan paniscus
Analyze
Symbol: RPL39
Name: ribosomal protein L39
RGD ID: 11837336
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN antibacterial humoral response (inferred); antimicrobial humoral immune response mediated by antimicrobial peptide (inferred); cytoplasmic translation (inferred); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability 14 (ortholog); FOUND IN cytoplasm (ortholog); cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L39; large ribosomal subunit protein eL39
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X119,167,811 - 119,173,033 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X119,171,415 - 119,176,588 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X108,818,773 - 108,823,935 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X119,243,623 - 119,248,916 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX119,243,624 - 119,248,916 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPL39
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X119,167,811 - 119,173,033 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X119,171,415 - 119,176,588 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X108,818,773 - 108,823,935 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X119,243,623 - 119,248,916 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX119,243,624 - 119,248,916 (-)Ensemblpanpan1.1panPan2
RPL39
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X119,786,504 - 119,791,630 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX119,786,504 - 119,791,630 (-)EnsemblGRCh38hg38GRCh38
GRCh37X118,920,467 - 118,925,593 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X118,804,497 - 118,809,634 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X118,702,350 - 118,707,488NCBI
CeleraX119,375,089 - 119,380,226 (-)NCBICelera
Cytogenetic MapXq24NCBI
HuRefX108,414,000 - 108,419,138 (-)NCBIHuRef
CHM1_1X118,831,549 - 118,836,703 (-)NCBICHM1_1
T2T-CHM13v2.0X118,161,629 - 118,166,754 (-)NCBIT2T-CHM13v2.0
Rpl39
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X36,346,169 - 36,348,852 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX36,346,173 - 36,349,055 (-)EnsemblGRCm39 Ensembl
GRCm38X37,082,518 - 37,085,222 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX37,082,520 - 37,085,402 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X34,622,515 - 34,625,179 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X33,513,965 - 33,516,629 (-)NCBIMGSCv36mm8
CeleraX23,806,150 - 23,808,814 (-)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX21.5NCBI
Rpl39
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X121,192,901 - 121,195,896 (-)NCBIGRCr8
mRatBN7.2X116,327,216 - 116,330,211 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX116,327,094 - 116,330,304 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl186,326,330 - 6,326,692 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX118,430,743 - 118,433,782 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X121,999,885 - 122,002,924 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X119,545,777 - 119,548,828 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X123,705,241 - 123,707,257 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX123,705,235 - 123,708,211 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X123,841,669 - 123,843,685 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X7,825,919 - 7,827,935 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X7,830,555 - 7,833,491 (+)NCBI
CeleraX115,554,572 - 115,556,588 (-)NCBICelera
Cytogenetic MapXq35NCBI
Rpl39
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955534200,591 - 203,827 (+)NCBIChiLan1.0ChiLan1.0
LOC100687285
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,404,495 - 3,411,279 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha353,412,178 - 3,419,003 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,461,129 - 3,467,957 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1353,336,550 - 3,343,086 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,358,282 - 3,365,107 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,690,923 - 4,697,748 (-)NCBIUU_Cfam_GSD_1.0
Rpl39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X90,850,993 - 90,854,543 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647910,132,965 - 10,136,506 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL39
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX98,178,150 - 98,181,332 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X98,178,148 - 98,181,439 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X113,430,973 - 113,434,240 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL39
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606532,567,895 - 32,573,168 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl39
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248953,748,059 - 3,752,199 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014343539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000063116   ⟹   ENSPPAP00000040201
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX119,243,624 - 119,248,916 (-)Ensembl
RefSeq Acc Id: XM_014343539   ⟹   XP_014199025
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X119,167,811 - 119,173,033 (-)NCBI
NHGRI_mPanPan1X119,171,415 - 119,176,588 (-)NCBI
Mhudiblu_PPA_v0X108,818,773 - 108,823,935 (-)NCBI
PanPan1.1X119,243,623 - 119,248,916 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_014199025 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000010678.1
  ENSPPAP00000040201
  ENSPPAP00000040201.1
Reference Protein Sequences
RefSeq Acc Id: XP_014199025   ⟸   XM_014343539
- UniProtKB: A0A2R9CE33 (UniProtKB/TrEMBL),   A0A2R9A1G6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000040201   ⟸   ENSPPAT00000063116


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028546 UniProtKB/TrEMBL
  ENSPPAG00000042764 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033330.1 UniProtKB/TrEMBL
  ENSPPAT00000063116.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1620.10 UniProtKB/TrEMBL
InterPro Ribosomal_L39 UniProtKB/TrEMBL
  Ribosomal_L39_CS UniProtKB/TrEMBL
  Ribosomal_L39e_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100980586 UniProtKB/TrEMBL
  pps:106634322 UniProtKB/TrEMBL
NCBI Gene RPL39 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L39 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L39 UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN L39E UniProtKB/TrEMBL
Pfam Ribosomal_L39 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L39E UniProtKB/TrEMBL
Superfamily-SCOP SSF48662 UniProtKB/TrEMBL
UniProt A0A2R9A1G6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CE33 ENTREZGENE, UniProtKB/TrEMBL