Sectm1b (secreted and transmembrane 1B) - Rat Genome Database

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Gene: Sectm1b (secreted and transmembrane 1B) Rattus norvegicus
Analyze
Symbol: Sectm1b
Name: secreted and transmembrane 1B
RGD ID: 735132
Description: Predicted to enable receptor ligand activity. Predicted to be involved in positive regulation of T cell cytokine production and positive regulation of canonical NF-kappaB signal transduction. Predicted to be active in plasma membrane. Orthologous to human SECTM1 (secreted and transmembrane 1); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC72571; secreted and transmembrane 1; secreted and transmembrane protein 1; secreted and transmembrane protein 1b; Sectm1; Unknown (protein for MGC:72571)
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,822,397 - 106,832,105 (-)NCBIGRCr8
mRatBN7.210106,324,070 - 106,333,779 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,325,203 - 106,333,769 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,428,896 - 111,437,460 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,891,945 - 110,900,518 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,245,655 - 106,254,220 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,251,363 - 110,260,577 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,251,363 - 110,259,985 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,838,188 - 109,846,794 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,271,328 - 110,279,893 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,285,832 - 110,294,392 (-)NCBI
Celera10104,863,965 - 104,872,530 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP,ISO)
1-nitropyrene  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cefaloridine  (EXP)
ceric oxide  (ISO)
chloroacetaldehyde  (ISO)
chromium(6+)  (ISO)
clodronic acid  (ISO)
Cuprizon  (EXP)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
dimethylarsinic acid  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
genistein  (ISO)
glycine betaine  (EXP)
inulin  (ISO)
iron dichloride  (ISO)
kojic acid  (ISO)
lucanthone  (ISO)
methylarsonic acid  (ISO)
methylisothiazolinone  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IBA,ISO)
plasma membrane  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Identification and characterization of K12 (SECTM1), a novel human gene that encodes a Golgi-associated protein with transmembrane and secreted isoforms. Slentz-Kesler KA, etal., Genomics 1998 Feb 1;47(3):327-40.
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:12761501   PMID:19056867   PMID:23376485   PMID:23533145  


Genomics

Comparative Map Data
Sectm1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,822,397 - 106,832,105 (-)NCBIGRCr8
mRatBN7.210106,324,070 - 106,333,779 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,325,203 - 106,333,769 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,428,896 - 111,437,460 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,891,945 - 110,900,518 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,245,655 - 106,254,220 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,251,363 - 110,260,577 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,251,363 - 110,259,985 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,838,188 - 109,846,794 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,271,328 - 110,279,893 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,285,832 - 110,294,392 (-)NCBI
Celera10104,863,965 - 104,872,530 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
SECTM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,321,024 - 82,333,959 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,321,024 - 82,334,074 (-)EnsemblGRCh38hg38GRCh38
GRCh371780,278,900 - 80,291,642 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,872,189 - 77,885,210 (-)NCBINCBI36Build 36hg18NCBI36
Build 341777,872,188 - 77,884,930NCBI
Celera1776,872,243 - 76,885,307 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,677,680 - 75,690,711 (-)NCBIHuRef
CHM1_11780,365,091 - 80,378,088 (-)NCBICHM1_1
T2T-CHM13v2.01783,189,791 - 83,202,897 (-)NCBIT2T-CHM13v2.0
Sectm1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,958,221 - 120,988,023 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,958,233 - 120,972,046 (-)EnsemblGRCm39 Ensembl
GRCm3811121,067,395 - 121,097,153 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11121,067,407 - 121,081,220 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,928,717 - 120,942,453 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,883,493 - 120,897,196 (-)NCBIMGSCv36mm8
Celera11132,805,135 - 132,818,871 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.89NCBI
SECTM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,860,241 - 98,873,050 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,761,576 - 103,774,401 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,730,203 - 76,742,921 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,540,821 - 82,553,688 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,540,829 - 82,553,688 (-)Ensemblpanpan1.1panPan2
SECTM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,953 - 44,434 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9632,844 - 646,318 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09624,146 - 637,691 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9624,257 - 637,660 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19618,703 - 632,173 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09779,312 - 792,669 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09854,496 - 867,758 (+)NCBIUU_Cfam_GSD_1.0
Sectm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602616,856 - 629,543 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365945,782,469 - 5,794,967 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SECTM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.112730,459 - 739,899 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SECTM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,240,021 - 74,261,333 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607745,879,579 - 45,892,721 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sectm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480111,116,435 - 11,128,497 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:61
Interacting mature miRNAs:66
Transcripts:ENSRNOT00000054932
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093723381107556066Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1089039175107713808Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1061843496106843496Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1097202388107556066Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087807758107713808Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1091127270107556066Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091727883107713808Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1097202388107556066Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 8 36 36 91 90 59 25 59 6 200 81 16 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000054932   ⟹   ENSRNOP00000051815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10106,325,203 - 106,333,769 (-)Ensembl
Rnor_6.0 Ensembl10110,251,363 - 110,259,985 (-)Ensembl
RefSeq Acc Id: NM_199082   ⟹   NP_954513
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,822,397 - 106,832,104 (-)NCBI
mRatBN7.210106,324,070 - 106,333,779 (-)NCBI
Rnor_6.010110,251,363 - 110,259,928 (-)NCBI
Rnor_5.010109,838,188 - 109,846,794 (-)NCBI
RGSC_v3.410110,271,328 - 110,279,893 (-)RGD
Celera10104,863,965 - 104,872,530 (-)RGD
Sequence:
RefSeq Acc Id: XM_006247882   ⟹   XP_006247944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,823,529 - 106,825,867 (-)NCBI
mRatBN7.210106,325,202 - 106,327,375 (-)NCBI
Rnor_6.010110,251,363 - 110,253,528 (-)NCBI
Rnor_5.010109,838,188 - 109,846,794 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063268790   ⟹   XP_063124860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,823,529 - 106,832,105 (-)NCBI
Protein Sequences
Protein RefSeqs NP_954513 (Get FASTA)   NCBI Sequence Viewer  
  XP_006247944 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124860 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH61794 (Get FASTA)   NCBI Sequence Viewer  
  EDM06926 (Get FASTA)   NCBI Sequence Viewer  
  EDM06927 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000051815.2
RefSeq Acc Id: NP_954513   ⟸   NM_199082
- Peptide Label: precursor
- UniProtKB: E9PTB4 (UniProtKB/TrEMBL),   A6HLM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247944   ⟸   XM_006247882
- Peptide Label: isoform X1
- UniProtKB: E9PTB4 (UniProtKB/TrEMBL),   A6HLM2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000051815   ⟸   ENSRNOT00000054932
RefSeq Acc Id: XP_063124860   ⟸   XM_063268790
- Peptide Label: isoform X1
- UniProtKB: A6HLM2 (UniProtKB/TrEMBL),   E9PTB4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PTB4-F1-model_v2 AlphaFold E9PTB4 1-218 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697986
Promoter ID:EPDNEW_R8510
Type:multiple initiation site
Name:Sectm1b_1
Description:secreted and transmembrane 1B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.010110,259,938 - 110,259,998EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735132 AgrOrtholog
BioCyc Gene G2FUF-22373 BioCyc
Ensembl Genes ENSRNOG00000036673 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000054932.5 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5597864 IMAGE-MGC_LOAD
InterPro Ig-like_fold UniProtKB/TrEMBL
  SECTM1 UniProtKB/TrEMBL
KEGG Report rno:287884 UniProtKB/TrEMBL
MGC_CLONE MGC:72571 IMAGE-MGC_LOAD
NCBI Gene 287884 ENTREZGENE
PANTHER PTHR15123 UniProtKB/TrEMBL
  SECRETED AND TRANSMEMBRANE PROTEIN 1 UniProtKB/TrEMBL
PhenoGen Sectm1b PhenoGen
RatGTEx ENSRNOG00000036673 RatGTEx
UniProt A6HLM2 ENTREZGENE, UniProtKB/TrEMBL
  E9PTB4 ENTREZGENE, UniProtKB/TrEMBL
  Q6P781_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-09-25 Sectm1b  secreted and transmembrane 1B  Sectm1  secreted and transmembrane 1  Symbol and name updated to reflect mouse gene nomenclature 1299863 APPROVED
2004-09-10 Sectm1  secreted and transmembrane 1  MGC72571  Unknown (protein for MGC:72571)  Symbol and Name updated 1299863 APPROVED