GABRA4 (gamma-aminobutyric acid type A receptor subunit alpha4) - Rat Genome Database

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Gene: GABRA4 (gamma-aminobutyric acid type A receptor subunit alpha4) Homo sapiens
Analyze
Symbol: GABRA4
Name: gamma-aminobutyric acid type A receptor subunit alpha4
RGD ID: 734147
HGNC Page HGNC:4078
Description: Predicted to enable GABA-gated chloride ion channel activity. Predicted to contribute to GABA-A receptor activity; benzodiazepine receptor activity; and chloride channel activity. Involved in chloride transmembrane transport and gamma-aminobutyric acid signaling pathway. Part of GABA-A receptor complex. Implicated in autistic disorder. Biomarker of autistic disorder.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: GABA(A) receptor subunit alpha-4; GABA(A) receptor, alpha 4; GABAAR subunit alpha-4; gamma-aminobutyric acid (GABA) A receptor, alpha 4; gamma-aminobutyric acid A receptor alpha 4; gamma-aminobutyric acid receptor subunit alpha-4; gamma-aminobutyric acid type A receptor alpha4 subunit
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38446,918,900 - 46,993,581 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl446,918,900 - 46,993,581 (-)EnsemblGRCh38hg38GRCh38
GRCh37446,920,917 - 46,995,598 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36446,615,674 - 46,690,337 (-)NCBINCBI36Build 36hg18NCBI36
Build 34446,761,846 - 46,836,508NCBI
Celera447,369,879 - 47,444,600 (-)NCBICelera
Cytogenetic Map4p12NCBI
HuRef446,239,865 - 46,315,415 (-)NCBIHuRef
CHM1_1446,920,103 - 46,995,631 (-)NCBICHM1_1
T2T-CHM13v2.0446,886,225 - 46,960,936 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
GABRA4Humanautistic disorder  IEP 6480253 RGD 
GABRA4Humanautistic disorder  IAGP 6480254DNA:SNPs: :rs17599165 more ...RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GABRA4HumanAtaxia  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16091474
GABRA4Humanautistic disorder  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16080114 and PMID:16770606

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Object Symbol
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Original Reference(s)
GABRA4Human(+)-pilocarpine increases expressionISOGabra4 (Mus musculus)6480464Pilocarpine results in increased expression of GABRA4 proteinCTDPMID:15456836
GABRA4Human(+)-pilocarpine increases expressionISOGabra4 (Rattus norvegicus)6480464Pilocarpine results in increased expression of GABRA4 mRNACTDPMID:16091474
GABRA4Human(+)-pilocarpine multiple interactionsISOGabra4 (Rattus norvegicus)6480464Pilocarpine promotes the reaction [EGR3 protein binds to GABRA4 promoter]CTDPMID:16091474
GABRA4Human17beta-estradiol affects expressionEXP 6480464Estradiol affects the expression of GABRA4 mRNACTDPMID:16000229
GABRA4Human17beta-estradiol multiple interactionsISOGabra4 (Rattus norvegicus)6480464[bisphenol A co-treated with Estradiol] results in increased expression of GABRA4 mRNACTDPMID:26496021
GABRA4Human17beta-estradiol 3-benzoate multiple interactionsISOGabra4 (Rattus norvegicus)6480464[Progesterone co-treated with estradiol 3-benzoate] results in decreased expression of GABRA4 mRNACTDPMID:19394921
GABRA4Human3alpha-hydroxy-5beta-pregnan-20-one increases expressionISOGabra4 (Rattus norvegicus)6480464Pregnanolone deficiency results in increased expression of GABRA4 mRNA and Pregnanolone deficiency results in increased expression of GABRA4 proteinCTDPMID:9651210
GABRA4Human3alpha-hydroxy-5beta-pregnan-20-one multiple interactionsEXP 6480464Pregnanolone results in increased activity of [GABRA4 protein binds to GABRB3 binds to GABRD protein]CTDPMID:29038840
GABRA4Human6-propyl-2-thiouracil decreases expressionISOGabra4 (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of GABRA4 mRNACTDPMID:24780913
GABRA4Human8-Br-cAMP increases expressionEXP 64804648-Bromo Cyclic Adenosine Monophosphate results in increased expression of GABRA4 mRNACTDPMID:22079614
GABRA4Humanamitriptyline increases expressionISOGabra4 (Rattus norvegicus)6480464Amitriptyline results in increased expression of GABRA4 mRNACTDPMID:21820738
GABRA4Humanammonium chloride affects expressionISOGabra4 (Rattus norvegicus)6480464Ammonium Chloride affects the expression of GABRA4 mRNACTDPMID:16483693
GABRA4Humanandrogen antagonist multiple interactionsISOGabra4 (Rattus norvegicus)6480464[bisphenol A co-treated with enzacamene co-treated with octylmethoxycinnamate co-treated with butylparaben co-treated with Androgen Antagonists co-treated with Acetaminophen] results in decreased expression of GABRA4 mRNACTDPMID:25607892
GABRA4Humanarsenite(3-) increases methylationEXP 6480464arsenite results in increased methylation of GABRA4 promoterCTDPMID:23974009
GABRA4Humanatrazine increases expressionEXP 6480464Atrazine results in increased expression of GABRA4 mRNACTDPMID:22378314
GABRA4Humanbenzamide multiple interactionsISOGabra4 (Mus musculus)6480464benzamide analog promotes the reaction [gamma-Aminobutyric Acid results in increased activity of [GABRA4 protein binds to GABRB2 protein binds to GABRD protein]]CTDPMID:18762200
GABRA4Humanbenzamide multiple interactionsEXP 6480464benzamide analog binds to and results in increased activity of [GABRA4 protein binds to GABRB3 protein binds to GABRD protein] and benzamide analog promotes the reaction [gamma-Aminobutyric Acid results in increased activity of [GABRA4 protein binds to GABRB3 protein binds to GABRD protein]]CTDPMID:18762200
GABRA4Humanbenzo[a]pyrene increases methylationEXP 6480464Benzo(a)pyrene results in increased methylation of GABRA4 5' UTRCTDPMID:27901495
GABRA4Humanbenzo[a]pyrene decreases methylationEXP 6480464Benzo(a)pyrene results in decreased methylation of GABRA4 3' UTR and Benzo(a)pyrene results in decreased methylation of GABRA4 promoterCTDPMID:27901495
GABRA4Humanbis(2-ethylhexyl) phthalate multiple interactionsISOGabra4 (Rattus norvegicus)6480464[Dibutyl Phthalate co-treated with Diethylhexyl Phthalate co-treated with vinclozolin co-treated with prochloraz co-treated with procymidone co-treated with Linuron co-treated with epoxiconazole co-treated with Dichlorodiphenyl Dichloroethylene] results in decreased expression of GABRA4 mRNACTDPMID:25607892

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Biological Process
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Original Reference(s)
GABRA4Humancentral nervous system development acts_upstream_of_or_withinIEAUniProtKB:Q9D6F4 and ensembl:ENSMUSP00000031121150520179 EnsemblGO_REF:0000107
GABRA4Humanchloride transmembrane transport involved_inIDA 150520179 PMID:35355020ComplexPortalPMID:35355020
GABRA4Humanchloride transmembrane transport involved_inIBAMGI:95623 more ...150520179 GO_CentralGO_REF:0000033
GABRA4Humanchloride transmembrane transport involved_inIEAGO:0005254150520179 GOCGO_REF:0000108
GABRA4Humanchloride transport involved_inIEAUniProtKB-KW:KW-0869150520179 UniProtGO_REF:0000043
GABRA4Humanchloride transport involved_inIEAInterPro:IPR005434150520179 InterProGO_REF:0000002
GABRA4Humangamma-aminobutyric acid signaling pathway involved_inIDA 150520179 PMID:35355020ComplexPortalPMID:35355020
GABRA4Humangamma-aminobutyric acid signaling pathway involved_inIBAMGI:95623 more ...150520179 GO_CentralGO_REF:0000033
GABRA4Humangamma-aminobutyric acid signaling pathway involved_inIEAInterPro:IPR005434150520179 InterProGO_REF:0000002
GABRA4Humangamma-aminobutyric acid signaling pathway involved_inTAS 150520179 PMID:8719416PINCPMID:8719416
GABRA4Humangamma-aminobutyric acid signaling pathway involved_inISSComplexPortal:CPX-2954150520179 ComplexPortalGO_REF:0000114
GABRA4Humaninhibitory synapse assembly involved_inIBAMGI:95613 more ...150520179 GO_CentralGO_REF:0000033
GABRA4Humanmonoatomic ion transmembrane transport involved_inIEAUniProtKB-KW:KW-0407150520179 UniProtGO_REF:0000043
GABRA4Humanmonoatomic ion transmembrane transport involved_inIEAGO:0005216 and GO:0005230150520179 GOCGO_REF:0000108
GABRA4Humanmonoatomic ion transmembrane transport involved_inIEAInterPro:IPR006028 and InterPro:IPR006201150520179 InterProGO_REF:0000002
GABRA4Humanmonoatomic ion transport involved_inIEAInterPro:IPR001390 more ...150520179 InterProGO_REF:0000002
GABRA4Humanmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-0406150520179 UniProtGO_REF:0000043
GABRA4Humanregulation of postsynaptic membrane potential involved_inIEAGO:1904315150520179 GOCGO_REF:0000108
GABRA4Humansynaptic transmission, GABAergic involved_inNAS 150520179 PMID:35355020ComplexPortalPMID:35355020
GABRA4Humansynaptic transmission, GABAergic involved_inIBAPANTHER:PTN000436343 more ...150520179 GO_CentralGO_REF:0000033
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Cellular Component
1 to 17 of 17 rows

  
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Original Reference(s)
GABRA4Humanchloride channel complex part_ofIEAUniProtKB-KW:KW-0869150520179 UniProtGO_REF:0000043
GABRA4Humandendrite membrane is_active_inIBAPANTHER:PTN000436343 more ...150520179 GO_CentralGO_REF:0000033
GABRA4HumanGABA-A receptor complex part_ofISSComplexPortal:CPX-2954150520179 ComplexPortalGO_REF:0000114
GABRA4HumanGABA-A receptor complex part_ofIBAMGI:95623 more ...150520179 GO_CentralGO_REF:0000033
GABRA4HumanGABA-A receptor complex part_ofIEAUniProtKB:P28471 and ensembl:ENSRNOP00000003191150520179 EnsemblGO_REF:0000107
GABRA4HumanGABA-A receptor complex part_ofIPI 150520179 PMID:35355020ComplexPortalPMID:35355020
GABRA4HumanGABA-ergic synapse is_active_inIEAUniProtKB:P28471 and ensembl:ENSRNOP00000003191150520179 EnsemblGO_REF:0000107
GABRA4Humanmembrane located_inIEAInterPro:IPR001390 more ...150520179 InterProGO_REF:0000002
GABRA4Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
GABRA4Humanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
GABRA4Humanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
GABRA4Humanplasma membrane located_inTAS 150520179 PMID:8719416ReactomePMID:8719416 and Reactome:R-HSA-975340
GABRA4Humanpostsynapse is_active_inIBAMGI:95614 more ...150520179 GO_CentralGO_REF:0000033
GABRA4Humanpostsynaptic membrane located_inIEAUniProtKB-SubCell:SL-0219150520179 UniProtGO_REF:0000044
GABRA4Humanpostsynaptic membrane located_inIEAUniProtKB-KW:KW-0628150520179 UniProtGO_REF:0000043
GABRA4Humanpostsynaptic specialization membrane is_active_inIEAUniProtKB:P28471 and ensembl:ENSRNOP00000003191150520179 EnsemblGO_REF:0000107
GABRA4Humansynapse located_inIEAUniProtKB-KW:KW-0770150520179 UniProtGO_REF:0000043
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Molecular Function
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Object Symbol
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Original Reference(s)
GABRA4Humanbenzodiazepine receptor activity enablesTAS 150520179 PMID:8719416PINCPMID:8719416
GABRA4Humanbenzodiazepine receptor activity contributes_toIBAPANTHER:PTN001055383 and Gabra6 (Rattus norvegicus)150520179 GO_CentralGO_REF:0000033
GABRA4Humanchloride channel activity enablesIEAUniProtKB-KW:KW-0869150520179 UniProtGO_REF:0000043
GABRA4Humanchloride channel activity contributes_toIBAMGI:95613 more ...150520179 GO_CentralGO_REF:0000033
GABRA4Humanextracellular ligand-gated monoatomic ion channel activity enablesIEAInterPro:IPR006202 and InterPro:IPR036734150520179 InterProGO_REF:0000002
GABRA4HumanGABA-A receptor activity enablesIEAInterPro:IPR001390 and InterPro:IPR005434150520179 InterProGO_REF:0000002
GABRA4HumanGABA-A receptor activity contributes_toIBAPANTHER:PTN001055383 and Gabra6 (Rattus norvegicus)150520179 GO_CentralGO_REF:0000033
GABRA4HumanGABA-gated chloride ion channel activity enablesIBAMGI:95617 more ...150520179 GO_CentralGO_REF:0000033
GABRA4Humanmonoatomic ion channel activity enablesIEAInterPro:IPR001390 more ...150520179 InterProGO_REF:0000002
GABRA4Humantransmembrane signaling receptor activity enablesIEAInterPro:IPR006028 and InterPro:IPR006201150520179 InterProGO_REF:0000002
GABRA4Humantransmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential enablesIEAUniProtKB:P28471 and ensembl:ENSRNOP00000003191150520179 EnsemblGO_REF:0000107
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#
Reference Title
Reference Citation
1. Investigation of autism and GABA receptor subunit genes in multiple ethnic groups. Collins AL, etal., Neurogenetics. 2006 Jul;7(3):167-74. Epub 2006 Jun 13.
2. mRNA and protein levels for GABAAalpha4, alpha5, beta1 and GABABR1 receptors are altered in brains from subjects with autism. Fatemi SH, etal., J Autism Dev Disord. 2010 Jun;40(6):743-50.
3. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:7607683   PMID:8175718   PMID:8719416   PMID:10414349   PMID:10903861   PMID:12091471   PMID:12242096   PMID:12477932   PMID:14702039   PMID:15028279   PMID:16080114   PMID:17124266  
PMID:17135278   PMID:18334916   PMID:18482426   PMID:19078961   PMID:19207358   PMID:19289452   PMID:19736351   PMID:19834535   PMID:19874574   PMID:19913121   PMID:20468064   PMID:20602615  
PMID:20628086   PMID:21244100   PMID:21422964   PMID:21832049   PMID:21873635   PMID:21988832   PMID:22273344   PMID:23561058   PMID:23937595   PMID:24431441   PMID:24722188   PMID:24778259  
PMID:26239769   PMID:29135068   PMID:29151244   PMID:29299688   PMID:29720720   PMID:29987050   PMID:31690811   PMID:32028044   PMID:35152403   PMID:35355020   PMID:38565639  



GABRA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38446,918,900 - 46,993,581 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl446,918,900 - 46,993,581 (-)EnsemblGRCh38hg38GRCh38
GRCh37446,920,917 - 46,995,598 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36446,615,674 - 46,690,337 (-)NCBINCBI36Build 36hg18NCBI36
Build 34446,761,846 - 46,836,508NCBI
Celera447,369,879 - 47,444,600 (-)NCBICelera
Cytogenetic Map4p12NCBI
HuRef446,239,865 - 46,315,415 (-)NCBIHuRef
CHM1_1446,920,103 - 46,995,631 (-)NCBICHM1_1
T2T-CHM13v2.0446,886,225 - 46,960,936 (-)NCBIT2T-CHM13v2.0
Gabra4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39571,727,077 - 71,815,651 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl571,727,092 - 71,815,651 (-)EnsemblGRCm39 Ensembl
GRCm38571,569,734 - 71,658,308 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl571,569,749 - 71,658,308 (-)EnsemblGRCm38mm10GRCm38
MGSCv37571,960,973 - 72,049,547 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36571,848,869 - 71,937,443 (-)NCBIMGSCv36mm8
Celera568,834,068 - 68,922,930 (-)NCBICelera
Cytogenetic Map5C3.2NCBI
cM Map538.08NCBI
Gabra4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81436,944,747 - 37,021,652 (+)NCBIGRCr8
mRatBN7.21436,590,782 - 36,667,724 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1436,590,782 - 36,665,844 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1436,935,370 - 37,010,517 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01438,240,130 - 38,315,273 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01436,728,476 - 36,803,610 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01439,154,072 - 39,230,994 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1439,154,529 - 39,231,695 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01438,966,016 - 39,040,606 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41439,047,461 - 39,122,531 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11439,049,851 - 39,124,917 (+)NCBI
Celera1435,813,603 - 35,888,671 (+)NCBICelera
Cytogenetic Map14p11NCBI
Gabra4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554431,564,202 - 1,632,580 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554431,564,794 - 1,631,975 (+)NCBIChiLan1.0ChiLan1.0
GABRA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2380,876,574 - 80,952,059 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1481,138,247 - 81,213,682 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0475,163,796 - 75,240,049 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1485,894,401 - 85,970,077 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl485,894,401 - 85,960,783 (+)Ensemblpanpan1.1panPan2
GABRA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11342,889,100 - 42,958,604 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1342,897,655 - 42,959,206 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1342,690,028 - 42,908,686 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01343,345,979 - 43,564,367 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1343,500,264 - 43,565,899 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11343,023,386 - 43,242,431 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01343,085,285 - 43,303,834 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01343,439,087 - 43,657,538 (-)NCBIUU_Cfam_GSD_1.0
Gabra4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528533,123,748 - 33,190,987 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648213,109,803 - 13,174,492 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648213,109,803 - 13,174,492 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABRA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl836,874,331 - 36,942,773 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1836,875,649 - 36,943,016 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2838,744,693 - 38,811,740 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GABRA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1273,253,789 - 3,323,102 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl273,254,735 - 3,321,128 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604749,315,895 - 49,393,069 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabra4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476120,071,316 - 20,132,098 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476120,071,343 - 20,132,523 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in GABRA4
46 total Variants

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Name
Type
Condition(s)
Position(s)
Clinical significance
NM_000809.3(GABRA4):c.*3958A>G single nucleotide variant Lung cancer [RCV000094851] Chr4:46924267 [GRCh38]
Chr4:46926284 [GRCh37]
Chr4:4p12
uncertain significance
GRCh38/hg38 4p13-q13.1(chr4:44356201-62245882)x3 copy number gain See cases [RCV000050683] Chr4:44356201..62245882 [GRCh38]
Chr4:44358218..63111600 [GRCh37]
Chr4:44052975..62794195 [NCBI36]
Chr4:4p13-q13.1
pathogenic
GRCh37/hg19 4p14-11(chr4:38532827-49064044)x3 copy number gain See cases [RCV000240190] Chr4:38532827..49064044 [GRCh37]
Chr4:4p14-11
pathogenic
GRCh37/hg19 4p16.3-11(chr4:68345-49089361)x3 copy number gain not specified [RCV003986479] Chr4:68345..49089361 [GRCh37]
Chr4:4p16.3-11
pathogenic
GRCh37/hg19 4p16.3-11(chr4:68345-49089361)x3 copy number gain See cases [RCV002292704] Chr4:68345..49089361 [GRCh37]
Chr4:4p16.3-11
pathogenic
GRCh38/hg38 4p13-11(chr4:44577678-49081273)x3 copy number gain See cases [RCV000051770] Chr4:44577678..49081273 [GRCh38]
Chr4:44579695..49083290 [GRCh37]
Chr4:44274452..48778047 [NCBI36]
Chr4:4p13-11
pathogenic
GRCh38/hg38 4p14-11(chr4:40496476-49579850)x3 copy number gain See cases [RCV000134946] Chr4:40496476..49579850 [GRCh38]
Chr4:40498493..49581867 [GRCh37]
Chr4:40193250..49276624 [NCBI36]
Chr4:4p14-11
pathogenic
GRCh38/hg38 4p16.3-12(chr4:36424-47491595)x3 copy number gain See cases [RCV000137261] Chr4:36424..47491595 [GRCh38]
Chr4:36424..47493612 [GRCh37]
Chr4:26424..47188369 [NCBI36]
Chr4:4p16.3-12
pathogenic
GRCh37/hg19 4p16.3-11(chr4:12440-49064044)x3 copy number gain See cases [RCV000240562] Chr4:12440..49064044 [GRCh37]
Chr4:4p16.3-11
pathogenic
GRCh37/hg19 4p16.3-11(chr4:68345-49093788)x3 copy number gain See cases [RCV000446451] Chr4:68345..49093788 [GRCh37]
Chr4:4p16.3-11
pathogenic
1 to 10 of 68 rows

Predicted Target Of
Summary Value
Count of predictions:5691
Count of miRNA genes:1363
Interacting mature miRNAs:1784
Transcripts:ENST00000264318, ENST00000502874, ENST00000508560, ENST00000509316, ENST00000511523
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597109445GWAS1205519_Hmathematical ability QTL GWAS1205519 (human)5e-08mathematical ability44694775346947754Human
597170363GWAS1266437_Heducational attainment QTL GWAS1266437 (human)2e-08educational attainment44693560346935604Human
597030896GWAS1126970_HMental deterioration QTL GWAS1126970 (human)0.0000005Mental deterioration44694167046941671Human
597061888GWAS1157962_Htonsillectomy risk measurement QTL GWAS1157962 (human)0.000001tonsillectomy risk measurement44695854346958544Human
597213615GWAS1309689_Hmathematical ability QTL GWAS1309689 (human)3e-11mathematical ability44694775346947754Human
407147240GWAS796216_Htype 2 diabetes mellitus QTL GWAS796216 (human)0.000001type 2 diabetes mellitus44696603346966034Human

D5S1969  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37553,242,847 - 53,243,107UniSTSGRCh37
GRCh37446,980,273 - 46,981,838UniSTSGRCh37
Build 36553,278,604 - 53,278,864RGDNCBI36
Celera447,429,267 - 47,430,834UniSTS
Celera550,196,476 - 50,196,724RGD
Cytogenetic Map4p12UniSTS
Cytogenetic Map5p15.2UniSTS
HuRef446,299,237 - 46,300,804UniSTS
HuRef550,215,230 - 50,215,478UniSTS
Marshfield Genetic Map560.92RGD
Marshfield Genetic Map560.92UniSTS
Genethon Genetic Map561.1UniSTS
deCODE Assembly Map568.9UniSTS
SHGC-67811  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37446,928,367 - 46,928,518UniSTSGRCh37
Build 36446,623,124 - 46,623,275RGDNCBI36
Celera447,377,329 - 47,377,480RGD
Cytogenetic Map4p12UniSTS
HuRef446,247,309 - 46,247,460UniSTS
G62895  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37446,940,380 - 46,940,677UniSTSGRCh37
Build 36446,635,137 - 46,635,434RGDNCBI36
Celera447,389,372 - 47,389,669RGD
Cytogenetic Map4p12UniSTS
HuRef446,259,324 - 46,259,621UniSTS
GDB:633093  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37446,995,094 - 46,995,317UniSTSGRCh37
Build 36446,689,851 - 46,690,074RGDNCBI36
Celera447,444,114 - 47,444,337RGD
Cytogenetic Map4p12UniSTS
HuRef446,314,085 - 46,314,308UniSTS
RH106543  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37446,961,749 - 46,961,940UniSTSGRCh37
Build 36446,656,506 - 46,656,697RGDNCBI36
Celera447,410,741 - 47,410,932RGD
Cytogenetic Map4p12UniSTS
HuRef446,280,716 - 46,280,907UniSTS
D4S3242  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37446,927,670 - 46,927,928UniSTSGRCh37
Build 36446,622,427 - 46,622,685RGDNCBI36
Celera447,376,632 - 47,376,890RGD
Cytogenetic Map4p12UniSTS
HuRef446,246,618 - 46,246,870UniSTS
D5Buc33  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37446,979,490 - 46,981,093UniSTSGRCh37
Celera447,428,484 - 47,430,089UniSTS
HuRef446,298,454 - 46,300,059UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
873 2031 2490 2179 4573 1084 1225 4 245 894 138 1979 5005 4633 7 3602 411 1167 945 112 1


1 to 20 of 20 rows
RefSeq Transcripts NG_011809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_000809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001204266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001204267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC107383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF238869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI599812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD013892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD013893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ534840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ535037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U20166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U30461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 20 of 20 rows

Ensembl Acc Id: ENST00000264318   ⟹   ENSP00000264318
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl446,918,900 - 46,993,581 (-)Ensembl
Ensembl Acc Id: ENST00000502874   ⟹   ENSP00000424386
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl446,971,083 - 46,993,540 (-)Ensembl
Ensembl Acc Id: ENST00000508560   ⟹   ENSP00000425445
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl446,928,127 - 46,993,505 (-)Ensembl
Ensembl Acc Id: ENST00000509316
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl446,992,670 - 46,993,548 (-)Ensembl
Ensembl Acc Id: ENST00000511523   ⟹   ENSP00000422152
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl446,928,127 - 46,993,505 (-)Ensembl
RefSeq Acc Id: NM_000809   ⟹   NP_000800
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38446,918,900 - 46,993,581 (-)NCBI
GRCh37446,920,917 - 46,996,424 (-)ENTREZGENE
Build 36446,615,674 - 46,690,337 (-)NCBI Archive
HuRef446,239,865 - 46,315,415 (-)ENTREZGENE
CHM1_1446,920,103 - 46,995,631 (-)NCBI
T2T-CHM13v2.0446,886,225 - 46,960,936 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001204266   ⟹   NP_001191195
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38446,918,900 - 46,993,581 (-)NCBI
GRCh37446,920,917 - 46,996,424 (-)ENTREZGENE
HuRef446,239,865 - 46,315,415 (-)ENTREZGENE
CHM1_1446,920,103 - 46,994,729 (-)NCBI
T2T-CHM13v2.0446,886,225 - 46,960,936 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001204267   ⟹   NP_001191196
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38446,918,900 - 46,993,581 (-)NCBI
GRCh37446,920,917 - 46,996,424 (-)ENTREZGENE
HuRef446,239,865 - 46,315,415 (-)ENTREZGENE
CHM1_1446,920,103 - 46,994,729 (-)NCBI
T2T-CHM13v2.0446,886,225 - 46,960,936 (-)NCBI
Sequence:
RefSeq Acc Id: NP_000800   ⟸   NM_000809
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8IYR7 (UniProtKB/Swiss-Prot),   P48169 (UniProtKB/Swiss-Prot),   X5D7F5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001191196   ⟸   NM_001204267
- Peptide Label: isoform 3
- UniProtKB: P48169 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001191195   ⟸   NM_001204266
- Peptide Label: isoform 2
- UniProtKB: P48169 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000424386   ⟸   ENST00000502874
Ensembl Acc Id: ENSP00000425445   ⟸   ENST00000508560
Name Modeler Protein Id AA Range Protein Structure
AF-P48169-F1-model_v2 AlphaFold P48169 1-554 view protein structure

RGD ID:6802335
Promoter ID:HG_KWN:48161
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000216893
Position:
Human AssemblyChrPosition (strand)Source
Build 36446,690,401 - 46,690,967 (-)MPROMDB
RGD ID:6867342
Promoter ID:EPDNEW_H6836
Type:initiation region
Name:GABRA4_1
Description:gamma-aminobutyric acid type A receptor alpha4 subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38446,993,532 - 46,993,592EPDNEW


1 to 40 of 41 rows
Database
Acc Id
Source(s)
COSMIC GABRA4 COSMIC
Ensembl Genes ENSG00000109158 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000264318 ENTREZGENE
  ENST00000264318.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.58.390 UniProtKB/Swiss-Prot
  2.70.170.10 UniProtKB/Swiss-Prot
GTEx ENSG00000109158 GTEx
HGNC ID HGNC:4078 ENTREZGENE
Human Proteome Map GABRA4 Human Proteome Map
InterPro GABAA/Glycine_rcpt UniProtKB/Swiss-Prot
  GABAAa_rcpt UniProtKB/Swiss-Prot
  GABBAa4_rcpt UniProtKB/Swiss-Prot
  Gabra-1-6_TM UniProtKB/Swiss-Prot
  Neur_chan_lig-bd UniProtKB/Swiss-Prot
  Neur_chan_lig-bd_sf UniProtKB/Swiss-Prot
  Neur_channel UniProtKB/Swiss-Prot
  Neuro-gated_channel_TM_sf UniProtKB/Swiss-Prot
  Neuro_actylchol_rec UniProtKB/Swiss-Prot
  Neurotrans-gated_channel_TM UniProtKB/Swiss-Prot
  Neurotransmitter_ion_chnl_CS UniProtKB/Swiss-Prot
KEGG Report hsa:2557 UniProtKB/Swiss-Prot
NCBI Gene 2557 ENTREZGENE
OMIM 137141 OMIM
PANTHER PTHR18945 UniProtKB/Swiss-Prot
Pfam Neur_chan_LBD UniProtKB/Swiss-Prot
  Neur_chan_memb UniProtKB/Swiss-Prot
PharmGKB PA28492 PharmGKB
PRINTS GABAARALPHA UniProtKB/Swiss-Prot
  GABAARALPHA4 UniProtKB/Swiss-Prot
  GABAARECEPTR UniProtKB/Swiss-Prot
  NRIONCHANNEL UniProtKB/Swiss-Prot
PROSITE NEUROTR_ION_CHANNEL UniProtKB/Swiss-Prot
Superfamily-SCOP SSF63712 UniProtKB/Swiss-Prot
  SSF90112 UniProtKB/Swiss-Prot
UniProt D6R924_HUMAN UniProtKB/TrEMBL
  D6RB66_HUMAN UniProtKB/TrEMBL
  GBRA4_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q8IYR7 ENTREZGENE
  X5D7F5 ENTREZGENE, UniProtKB/TrEMBL
  X5DP75_HUMAN UniProtKB/TrEMBL
1 to 40 of 41 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-03 GABRA4  gamma-aminobutyric acid type A receptor subunit alpha4  GABRA4  gamma-aminobutyric acid type A receptor alpha4 subunit  Symbol and/or name change 5135510 APPROVED
2016-02-10 GABRA4  gamma-aminobutyric acid type A receptor alpha4 subunit    gamma-aminobutyric acid (GABA) A receptor, alpha 4  Symbol and/or name change 5135510 APPROVED