GABRA4 (gamma-aminobutyric acid type A receptor subunit alpha4) - Rat Genome Database

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Gene: GABRA4 (gamma-aminobutyric acid type A receptor subunit alpha4) Chlorocebus sabaeus
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Symbol: GABRA4
Name: gamma-aminobutyric acid type A receptor subunit alpha4
RGD ID: 18401239
Description: ENCODES a protein that exhibits transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (ortholog); INVOLVED IN central nervous system development (inferred); chloride transmembrane transport (inferred); chloride transport (inferred); ASSOCIATED WITH Ataxia (ortholog); autistic disorder (ortholog); FOUND IN GABA-ergic synapse (ortholog); postsynaptic specialization membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-aminobutyric acid receptor subunit alpha-4; gamma-aminobutyric acid type A receptor alpha4 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1273,253,789 - 3,323,102 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl273,254,735 - 3,321,128 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604749,315,895 - 49,393,069 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GABRA4Green Monkeyautistic disorder  ISORGD:7341479068941 RGDPMID:20066485|REF_RGD_ID:6480253
GABRA4Green Monkeyautistic disorder  ISORGD:7341479068941DNA:SNPs: :rs17599165, rs1912960,rs17599416,rs7660336, rs2280073,rs16859788 (human) RGDPMID:16770606|REF_RGD_ID:6480254
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GABRA4Green MonkeyAtaxia  ISORGD:7341479068941CTD Direct Evidence: marker/mechanismCTDPMID:16091474
GABRA4Green Monkeyautistic disorder  ISORGD:7341479068941CTD Direct Evidence: marker/mechanismCTDPMID:16080114|PMID:16770606


Biological Process
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GABRA4Green Monkeycentral nervous system development acts_upstream_of_or_withinIEAUniProtKB:Q9D6F4|ensembl:ENSMUSP00000031121150520179 EnsemblGO_REF:0000107
GABRA4Green Monkeychloride transmembrane transport involved_inIEAUniProtKB:P48169|ensembl:ENSP00000264318150520179 EnsemblGO_REF:0000107
GABRA4Green Monkeychloride transport involved_inIEAInterPro:IPR005434150520179 InterProGO_REF:0000002
GABRA4Green Monkeychloride transport involved_inIEAUniProtKB-KW:KW-0869150520179 UniProtGO_REF:0000043
GABRA4Green Monkeygamma-aminobutyric acid signaling pathway involved_inIEAUniProtKB:P48169|ensembl:ENSP00000264318150520179 EnsemblGO_REF:0000107
GABRA4Green Monkeygamma-aminobutyric acid signaling pathway involved_inIEAInterPro:IPR005434150520179 InterProGO_REF:0000002
GABRA4Green Monkeymonoatomic ion transmembrane transport involved_inIEAUniProtKB-KW:KW-0407150520179 UniProtGO_REF:0000043
GABRA4Green Monkeymonoatomic ion transmembrane transport involved_inIEAInterPro:IPR006028|InterPro:IPR006201150520179 InterProGO_REF:0000002
GABRA4Green Monkeymonoatomic ion transport involved_inIEAUniProtKB-KW:KW-0406150520179 UniProtGO_REF:0000043
GABRA4Green Monkeymonoatomic ion transport involved_inIEAInterPro:IPR001390|InterPro:IPR006029|InterPro:IPR006202|InterPro:IPR036719|InterPro:IPR036734150520179 InterProGO_REF:0000002
1 to 10 of 10 rows

Cellular Component
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GABRA4Green Monkeychloride channel complex part_ofIEAUniProtKB-KW:KW-0869150520179 UniProtGO_REF:0000043
GABRA4Green MonkeyGABA-A receptor complex part_ofIEAUniProtKB:P48169|ensembl:ENSP00000264318150520179 EnsemblGO_REF:0000107
GABRA4Green MonkeyGABA-ergic synapse is_active_inISORGD:6216709068941PMID:16467523SynGOPMID:16467523|REF_RGD_ID:13702414
GABRA4Green Monkeymembrane located_inIEAInterPro:IPR001390|InterPro:IPR005434|InterPro:IPR006028|InterPro:IPR006029|InterPro:IPR006201|InterPro:IPR006202|InterPro:IPR036719|InterPro:IPR036734150520179 InterProGO_REF:0000002
GABRA4Green Monkeymembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
GABRA4Green Monkeyplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
GABRA4Green Monkeypostsynaptic membrane located_inIEAUniProtKB-KW:KW-0628150520179 UniProtGO_REF:0000043
GABRA4Green Monkeypostsynaptic membrane located_inIEAUniProtKB-SubCell:SL-0219150520179 UniProtGO_REF:0000044
GABRA4Green Monkeypostsynaptic specialization membrane is_active_inISORGD:6216709068941PMID:16467523SynGOPMID:16467523|REF_RGD_ID:13702414
GABRA4Green Monkeysynapse located_inIEAUniProtKB-KW:KW-0770150520179 UniProtGO_REF:0000043
1 to 10 of 10 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GABRA4Green Monkeychloride channel activity enablesIEAUniProtKB-KW:KW-0869150520179 UniProtGO_REF:0000043
GABRA4Green Monkeyextracellular ligand-gated monoatomic ion channel activity enablesIEAInterPro:IPR006202|InterPro:IPR036734150520179 InterProGO_REF:0000002
GABRA4Green MonkeyGABA-A receptor activity enablesIEAInterPro:IPR001390|InterPro:IPR005434150520179 InterProGO_REF:0000002
GABRA4Green Monkeymonoatomic ion channel activity enablesIEAInterPro:IPR001390|InterPro:IPR006028|InterPro:IPR006201150520179 InterProGO_REF:0000002
GABRA4Green Monkeytransmembrane signaling receptor activity enablesIEAInterPro:IPR006028|InterPro:IPR006201150520179 InterProGO_REF:0000002
GABRA4Green Monkeytransmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential enablesISORGD:6216709068941PMID:16467523SynGOPMID:16467523|REF_RGD_ID:13702414

PMID:22301074   PMID:30032202  



GABRA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1273,253,789 - 3,323,102 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl273,254,735 - 3,321,128 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604749,315,895 - 49,393,069 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GABRA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38446,918,900 - 46,993,581 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl446,918,900 - 46,993,581 (-)EnsemblGRCh38hg38GRCh38
GRCh37446,920,917 - 46,995,598 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36446,615,674 - 46,690,337 (-)NCBINCBI36Build 36hg18NCBI36
Build 34446,761,846 - 46,836,508NCBI
Celera447,369,879 - 47,444,600 (-)NCBICelera
Cytogenetic Map4p12NCBI
HuRef446,239,865 - 46,315,415 (-)NCBIHuRef
CHM1_1446,920,103 - 46,995,631 (-)NCBICHM1_1
T2T-CHM13v2.0446,886,225 - 46,960,936 (-)NCBIT2T-CHM13v2.0
Gabra4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39571,727,077 - 71,815,651 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl571,727,092 - 71,815,651 (-)EnsemblGRCm39 Ensembl
GRCm38571,569,734 - 71,658,308 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl571,569,749 - 71,658,308 (-)EnsemblGRCm38mm10GRCm38
MGSCv37571,960,973 - 72,049,547 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36571,848,869 - 71,937,443 (-)NCBIMGSCv36mm8
Celera568,834,068 - 68,922,930 (-)NCBICelera
Cytogenetic Map5C3.2NCBI
cM Map538.08NCBI
Gabra4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81436,944,747 - 37,021,652 (+)NCBIGRCr8
mRatBN7.21436,590,782 - 36,667,724 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1436,590,782 - 36,665,844 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1436,935,370 - 37,010,517 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01438,240,130 - 38,315,273 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01436,728,476 - 36,803,610 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01439,154,072 - 39,230,994 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1439,154,529 - 39,231,695 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01438,966,016 - 39,040,606 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41439,047,461 - 39,122,531 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11439,049,851 - 39,124,917 (+)NCBI
Celera1435,813,603 - 35,888,671 (+)NCBICelera
Cytogenetic Map14p11NCBI
Gabra4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554431,564,202 - 1,632,580 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554431,564,794 - 1,631,975 (+)NCBIChiLan1.0ChiLan1.0
GABRA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2380,876,574 - 80,952,059 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1481,138,247 - 81,213,682 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0475,163,796 - 75,240,049 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1485,894,401 - 85,970,077 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl485,894,401 - 85,960,783 (+)Ensemblpanpan1.1panPan2
GABRA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11342,889,100 - 42,958,604 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1342,897,655 - 42,959,206 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1342,690,028 - 42,908,686 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01343,345,979 - 43,564,367 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1343,500,264 - 43,565,899 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11343,023,386 - 43,242,431 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01343,085,285 - 43,303,834 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01343,439,087 - 43,657,538 (-)NCBIUU_Cfam_GSD_1.0
Gabra4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528533,123,748 - 33,190,987 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648213,109,803 - 13,174,492 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648213,109,803 - 13,174,492 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABRA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl836,874,331 - 36,942,773 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1836,875,649 - 36,943,016 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2838,744,693 - 38,811,740 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Gabra4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476120,071,316 - 20,132,098 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476120,071,343 - 20,132,523 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in GABRA4
1450 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
49 9 17 17 17 49 9


RefSeq Transcripts XM_008017485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JBLKOC010000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000015231   ⟹   ENSCSAP00000013176
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl273,254,735 - 3,321,128 (+)Ensembl
RefSeq Acc Id: XM_008017485   ⟹   XP_008015676
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1273,253,789 - 3,323,102 (+)NCBI
Vero_WHO_p1.0NW_02366604749,315,895 - 49,393,069 (+)NCBI
Sequence:
Protein RefSeqs XP_008015676 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013176.1
RefSeq Acc Id: XP_008015676   ⟸   XM_008017485
Ensembl Acc Id: ENSCSAP00000013176   ⟸   ENSCSAT00000015231



1 to 28 of 28 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000017136 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015231.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/TrEMBL
InterPro GABAA/Glycine_rcpt UniProtKB/TrEMBL
  GABAAa_rcpt UniProtKB/TrEMBL
  GABBAa4_rcpt UniProtKB/TrEMBL
  Gabra-1-6_TM UniProtKB/TrEMBL
  Neur_chan_lig-bd UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/TrEMBL
  Neur_channel UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/TrEMBL
KEGG Report csab:103246143 UniProtKB/TrEMBL
NCBI Gene GABRA4 ENTREZGENE
PANTHER PTHR18945 UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/TrEMBL
PRINTS GABAARALPHA UniProtKB/TrEMBL
  GABAARALPHA4 UniProtKB/TrEMBL
  GABAARECEPTR UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/TrEMBL
  SSF90112 UniProtKB/TrEMBL
UniProt A0A0D9RX37_CHLSB UniProtKB/TrEMBL
1 to 28 of 28 rows