Nr2f6 (nuclear receptor subfamily 2, group F, member 6) - Rat Genome Database

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Gene: Nr2f6 (nuclear receptor subfamily 2, group F, member 6) Mus musculus
Analyze
Symbol: Nr2f6
Name: nuclear receptor subfamily 2, group F, member 6
RGD ID: 733508
MGI Page MGI
Description: Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within detection of temperature stimulus involved in sensory perception of pain; entrainment of circadian clock by photoperiod; and neuron development. Predicted to be located in nucleus. Is expressed in several structures, including alimentary system; genitourinary system; hemolymphoid system; nervous system; and sensory organ. Orthologous to human NR2F6 (nuclear receptor subfamily 2 group F member 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AV090102; avian erythroblastic leukemia viral (v-erb-a) oncogene homolog-like 2; COUP transcription factor 3; COUP-T; COUP-TF3; EA; EAR-2; EAR2; Erb; Erbal2; nuclear receptor subfamily 2 group F member 6; V-erbA-related protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,826,762 - 71,834,593 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,826,767 - 71,834,604 (-)EnsemblGRCm39 Ensembl
GRCm38871,374,118 - 71,381,967 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,374,123 - 71,381,960 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,898,018 - 73,905,851 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36874,303,114 - 74,310,373 (-)NCBIMGSCv36mm8
Celera873,898,789 - 73,906,622 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (EXP)
4-tert-Octylphenol  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
clofibrate  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dichloromethane  (EXP)
diclofenac  (ISO)
diethylstilbestrol  (ISO)
diquat  (EXP)
endosulfan  (ISO)
Enterolactone  (ISO)
epoxiconazole  (EXP)
finasteride  (ISO)
folic acid  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
gamma-hexachlorocyclohexane  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
isoflurane  (EXP)
lead diacetate  (EXP)
methapyrilene  (ISO)
methylmercury chloride  (EXP)
methylmercury(1+)  (ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
p-tert-Amylphenol  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
procymidone  (ISO)
raloxifene  (ISO)
sodium arsenite  (EXP,ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triptonide  (EXP)
trovafloxacin  (EXP)
urethane  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
mitochondrion  (ISO)
nucleus  (IEA,ISO)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Neidhardt L, etal., Mech Dev 2000 Nov;98(1-2):77-94.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7947324   PMID:8194772   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11382775   PMID:12466851   PMID:12477932   PMID:12690040   PMID:14681479   PMID:15226823  
PMID:15741322   PMID:15782199   PMID:16123981   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16679559   PMID:17609113   PMID:18287559   PMID:18554416   PMID:18701084   PMID:19208226  
PMID:19591821   PMID:20059953   PMID:20211142   PMID:20932939   PMID:21247419   PMID:21267068   PMID:21873635   PMID:22278040   PMID:22718343   PMID:22921335   PMID:23975195   PMID:24096122  
PMID:24952961   PMID:24966384   PMID:25505127   PMID:26387951   PMID:29670099   PMID:31509749   PMID:31937317   PMID:32325033   PMID:33589606   PMID:36052079   PMID:37406115   PMID:38307386  
PMID:38355793   PMID:38682559   PMID:38710764  


Genomics

Comparative Map Data
Nr2f6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,826,762 - 71,834,593 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,826,767 - 71,834,604 (-)EnsemblGRCm39 Ensembl
GRCm38871,374,118 - 71,381,967 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,374,123 - 71,381,960 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,898,018 - 73,905,851 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36874,303,114 - 74,310,373 (-)NCBIMGSCv36mm8
Celera873,898,789 - 73,906,622 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
NR2F6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,231,883 - 17,245,919 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,231,883 - 17,245,919 (-)EnsemblGRCh38hg38GRCh38
GRCh371917,342,692 - 17,356,728 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,203,694 - 17,217,151 (-)NCBINCBI36Build 36hg18NCBI36
Build 341917,203,693 - 17,217,151NCBI
Celera1917,244,237 - 17,257,694 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1916,910,022 - 16,923,473 (-)NCBIHuRef
CHM1_11917,342,241 - 17,355,623 (-)NCBICHM1_1
T2T-CHM13v2.01917,366,766 - 17,380,792 (-)NCBIT2T-CHM13v2.0
Nr2f6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,080,003 - 18,087,449 (-)NCBIGRCr8
mRatBN7.21618,046,012 - 18,053,914 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,046,013 - 18,053,459 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,097,639 - 18,105,087 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,230,198 - 19,237,646 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,150,560 - 18,158,008 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,769,968 - 19,777,414 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,769,968 - 19,777,414 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,630,090 - 19,637,536 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,535,181 - 18,542,627 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,535,178 - 18,542,625 (-)NCBI
Celera1618,253,585 - 18,280,658 (-)NCBICelera
Cytogenetic Map16p14NCBI
Nr2f6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955524961,232 - 965,012 (+)NCBIChiLan1.0ChiLan1.0
NR2F6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,102,546 - 22,117,341 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,108,130 - 21,123,155 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,719,444 - 16,733,006 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11917,694,149 - 17,707,124 (-)NCBIpanpan1.1PanPan1.1panPan2
NR2F6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,490,113 - 45,500,606 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,464,356 - 45,500,608 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,403,706 - 45,413,888 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,976,553 - 45,986,740 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,976,771 - 45,986,742 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12045,213,189 - 45,223,360 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,623,201 - 45,633,231 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,898,871 - 45,909,053 (+)NCBIUU_Cfam_GSD_1.0
Nr2f6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,047,581 - 204,057,144 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,597,651 - 3,605,836 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,596,720 - 3,606,283 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR2F6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,426,618 - 60,438,177 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,426,116 - 60,438,178 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,095,382 - 60,107,896 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NR2F6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,728,489 - 15,753,019 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl615,725,021 - 15,753,171 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660743,688,689 - 3,704,484 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nr2f6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908672,916 - 680,443 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908673,615 - 680,443 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nr2f6
393 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1686
Count of miRNA genes:589
Interacting mature miRNAs:712
Transcripts:ENSMUST00000002466, ENSMUST00000124732, ENSMUST00000127443, ENSMUST00000132630, ENSMUST00000137058, ENSMUST00000137734, ENSMUST00000155463, ENSMUST00000156270
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84809006482090180Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84819016882190288Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85050595884505958Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86872247983326976Mouse
11039503Ccc4_mcolitis susceptibility in the Collaborative Cross 4 (mouse)86517423778002730Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7158942790929226Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85233484386334843Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84474791478748059Mouse

Markers in Region
AI326022  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,379,169 - 71,379,314UniSTSGRCm38
MGSCv37873,903,068 - 73,903,213UniSTSGRCm37
Celera873,903,839 - 73,903,984UniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8763.41UniSTS
AV090102  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,374,198 - 71,374,306UniSTSGRCm38
MGSCv37873,898,097 - 73,898,205UniSTSGRCm37
Celera873,898,868 - 73,898,976UniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8766.95UniSTS
X76654  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,374,149 - 71,374,305UniSTSGRCm38
MGSCv37873,898,048 - 73,898,204UniSTSGRCm37
Celera873,898,819 - 73,898,975UniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8764.06UniSTS
Whitehead_YAC8 UniSTS
Nr2f6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37873,898,067 - 73,898,588UniSTSGRCm37
Celera873,898,838 - 73,899,359UniSTS
Cytogenetic Map8B3.3UniSTS
cM Map833.5UniSTS
Nr2f6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,374,168 - 71,374,689UniSTSGRCm38
MGSCv37873,898,067 - 73,898,588UniSTSGRCm37
Celera873,898,838 - 73,899,359UniSTS
Cytogenetic Map8B3.3UniSTS
cM Map833.5UniSTS
Nr2f6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8B3.3UniSTS
X76654  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,374,198 - 71,374,297UniSTSGRCm38
MGSCv37873,898,097 - 73,898,196UniSTSGRCm37
Celera873,898,868 - 73,898,967UniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8764.06UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001417423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_184449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ182623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L25674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X76654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X76655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000002466   ⟹   ENSMUSP00000002466
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,826,771 - 71,834,604 (-)Ensembl
GRCm38.p6 Ensembl871,374,127 - 71,381,960 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124732   ⟹   ENSMUSP00000116498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,828,396 - 71,833,734 (-)Ensembl
GRCm38.p6 Ensembl871,375,752 - 71,381,090 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127443
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,828,396 - 71,833,553 (-)Ensembl
GRCm38.p6 Ensembl871,375,752 - 71,380,909 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,826,767 - 71,834,550 (-)Ensembl
GRCm38.p6 Ensembl871,374,123 - 71,381,906 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137058   ⟹   ENSMUSP00000121648
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,828,463 - 71,833,821 (-)Ensembl
GRCm38.p6 Ensembl871,375,819 - 71,381,177 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137734
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,827,272 - 71,828,434 (-)Ensembl
GRCm38.p6 Ensembl871,374,628 - 71,375,790 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,827,297 - 71,828,434 (-)Ensembl
GRCm38.p6 Ensembl871,374,653 - 71,375,790 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,827,762 - 71,828,434 (-)Ensembl
GRCm38.p6 Ensembl871,375,118 - 71,375,790 (-)Ensembl
RefSeq Acc Id: NM_001417423   ⟹   NP_001404352
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,826,770 - 71,834,593 (-)NCBI
RefSeq Acc Id: NM_010150   ⟹   NP_034280
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,826,770 - 71,834,593 (-)NCBI
GRCm38871,374,119 - 71,381,952 (-)NCBI
MGSCv37873,898,018 - 73,905,851 (-)RGD
Celera873,898,789 - 73,906,622 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_184449
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,826,770 - 71,834,593 (-)NCBI
RefSeq Acc Id: XM_011242264   ⟹   XP_011240566
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,826,762 - 71,833,477 (-)NCBI
GRCm38871,374,118 - 71,380,833 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242265   ⟹   XP_011240567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,826,762 - 71,831,012 (-)NCBI
GRCm38871,374,118 - 71,378,368 (-)NCBI
Sequence:
RefSeq Acc Id: NP_034280   ⟸   NM_010150
- Peptide Label: isoform 1
- UniProtKB: Q61504 (UniProtKB/Swiss-Prot),   Q922G8 (UniProtKB/Swiss-Prot),   P43136 (UniProtKB/Swiss-Prot),   Q3UIT0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011240566   ⟸   XM_011242264
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011240567   ⟸   XM_011242265
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSMUSP00000116498   ⟸   ENSMUST00000124732
Ensembl Acc Id: ENSMUSP00000002466   ⟸   ENSMUST00000002466
Ensembl Acc Id: ENSMUSP00000121648   ⟸   ENSMUST00000137058
RefSeq Acc Id: NP_001404352   ⟸   NM_001417423
- Peptide Label: isoform 2
Protein Domains
NR LBD   Nuclear receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P43136-F1-model_v2 AlphaFold P43136 1-390 view protein structure

Promoters
RGD ID:8667385
Promoter ID:EPDNEW_M11724
Type:initiation region
Name:Nr2f6_1
Description:Mus musculus nuclear receptor subfamily 2, group F, member 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,381,946 - 71,382,006EPDNEW
RGD ID:6843557
Promoter ID:MM_KWN:54773
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000054957,   OTTMUST00000054958,   UC009MCW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,899,521 - 73,900,687 (-)MPROMDB
RGD ID:6843559
Promoter ID:MM_KWN:54774
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:OTTMUST00000054954,   OTTMUST00000054955,   OTTMUST00000054959,   OTTMUST00000054960,   OTTMUST00000054961
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,904,881 - 73,906,762 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1352453 AgrOrtholog
Ensembl Genes ENSMUSG00000002393 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000002466 ENTREZGENE
  ENSMUST00000002466.9 UniProtKB/Swiss-Prot
  ENSMUST00000124732.2 UniProtKB/TrEMBL
  ENSMUST00000137058.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hormone_rcpt_NR2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13864 UniProtKB/Swiss-Prot
MGD MGI:1352453 ENTREZGENE
NCBI Gene 13864 ENTREZGENE
PANTHER NUCLEAR HORMONE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hormone_recep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nr2f6 PhenoGen
PRINTS COUPTNFACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F6Q454_MOUSE UniProtKB/TrEMBL
  F7DC78_MOUSE UniProtKB/TrEMBL
  NR2F6_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UIT0 ENTREZGENE, UniProtKB/TrEMBL
  Q61504 ENTREZGENE
  Q922G8 ENTREZGENE
UniProt Secondary Q61504 UniProtKB/Swiss-Prot
  Q922G8 UniProtKB/Swiss-Prot